SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3540

Length: 1898 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene3540 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	serine carboxypeptidase-like 26 [Arabidopsis thaliana] sp\|Q9ZQQ0.1\|SCP26_ARATH RecName: Full=Serine carboxypeptidase-like 26; Flags: Precursor gb\|AAD21479.1\| putative serine carboxypeptidase II [Arabidopsis thaliana] gb\|AAM15111.1\| putative serine carboxy	-	-	0.0	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	79%
Sma3	Serine carboxypeptidase, putative	-	-	1.594e-30	-

Source	ECs	Term	Type	e value	Identity
Sma3	Hydrolases, Acting on peptide bonds (peptide hydrolases), Serine-type carboxypeptidases.	EC:3.4.16.-	-	0.0	-
Sma3	Carboxypeptidase D.	EC:3.4.16.6	-	0.0	-

Source	Gene names
Sma3	AP7_B10.1; AT4G30810; At1g11080; At1g28110; At1g43780; At1g61130; At2g05850; At2g12480; At2g24000; At2g24010; At2g33530; At2g35770; At2g35780; At3g02110; At3g07990; At3g17180; At3g52000; At3g52010; At3g52020; At3g63470; At4g15100; At4g30610; At4g30810; At

Source	GOs	Term	Type	Identity
Sma3	extracellular region	GO:0005576	Cellular Component	-
Sma3	extracellular space	GO:0005615	Cellular Component	-
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	vacuole	GO:0005773	Cellular Component	-
Sma3	plant-type cell wall	GO:0009505	Cellular Component	-
Sma3	serine-type carboxypeptidase activity	GO:0004185	Molecular Function	-
Sma3	hydroxymandelonitrile lyase activity	GO:0050419	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	brassinosteroid mediated signaling pathway	GO:0009742	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase S10, serine carboxypeptidase	IPR001563	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3	Lysosome-associated membrane glycoprotein, conserved site	IPR018134	-	-
Sma3	Peptidase S10, serine carboxypeptidase, active site	IPR018202	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G35780.1	scpl26 serine carboxypeptidase-like 26 chr2:15037733-15040104 REVERSE LENGTH=452	63%
RefSeq	Arabidopsis thaliana	NP_181121.1	serine carboxypeptidase-like 26 [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002312024.1	predicted protein [Populus trichocarpa]	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUH4

Fln msg: your sequence is longer than subject: 494 - 450

Fln protein: MILSLQSFWRSIGSRLTMSRCEVYLGLLLVLVLLLTLQSTATWEESNEIDWRNEQARDKITELPGLPSNANFAQYSGYITVDKNAGRALFYWLIEATEDPSSKPLVLWLNGGPGCSSVAYGEAEELGPFHINSDGKTLHLNPYSWNRLANILFLDSPAGVGFSYTNTSSDISKSGDKRTAEDSHTFLLNWLERFPQYKNREFYIAGESYGGHYVPQLAQVIYRHNMDLENPAINLKGYMVGNGVTDDFHDRVGIFQFMWSHGLISDNTFRMLNVFCDFSSLVHPSSLCEKALEYADVEMGQIDPYSIYTPPCLNSTGTYGKQLKKVKSWRHLFGGYDPCTEKYSKIYFNLPEVQKALHANVTGIPYEWTTCSDAVGENWGDSPRSVLSIYRELIKAGLRIWMFSGDTDAVIPVTSTRNSINALKLRTVTHWHPWYDNGQVGGWTQVYEGLTFVTIRGAGHEVPLHEPEKAFVLFKSFLEGKPMPVSTNLVDTL*

Protein Length: 495

Fln nts: AGTTACAGTTTTAGAATTTAATACCTTCTGCCCCCCTGTCAGATTATAAAACGTCGTATTCGTTGGGTGTGTGTGT_-_ATGATATTATCGTTACAATCATTTTGGAGGAGCATTGGCAGCAGACTTACAATGAGCAGGTGCGAAGTTTATCTGGGATTGCTTCTGGTTCTGGTTCTGCTTTTGACGTTGCAATCCACAGCCACATGGGAGGAGAGTAATGAGATTGATTGGAGAAATGAGCAGGCCAGGGACAAAATCACTGAACTCCCTGGTCTGCCCTCAAATGCGAACTTTGCCCAATATTCTGGCTACATAACTGTAGACAAAAACGCTGGCAGAGCCCTTTTCTACTGGCTCATTGAAGCCACAGAAGACCCATCTTCTAAGCCTCTGGTCTTGTGGTTGAATGGAGGTCCTGGGTGTTCTTCTGTGGCATATGGGGAAGCAGAAGAGCTTGGGCCTTTTCACATTAATTCTGATGGGAAAACTCTCCACCTTAACCCATATTCATGGAATAGATTGGCGAATATACTCTTCTTGGATTCCCCTGCTGGGGTTGGTTTTTCCTACACCAACACTTCTTCAGATATATCCAAGTCTGGAGATAAACGAACTGCTGAAGATTCACACACCTTCTTGCTCAACTGGTTGGAAAGATTCCCTCAATATAAAAATAGGGAGTTTTACATTGCAGGAGAGAGCTATGGAGGGCATTACGTTCCTCAGTTAGCTCAAGTCATTTACAGACACAACATGGACCTTGAAAATCCAGCCATTAATCTGAAGGGATATATGGTGGGCAATGGAGTTACAGATGATTTCCATGATCGTGTAGGAATTTTTCAATTTATGTGGTCTCATGGTCTCATATCCGACAACACTTTCCGAATGCTCAACGTTTTCTGTGATTTTTCGTCTCTTGTGCACCCATCATCTCTATGTGAAAAGGCATTAGAGTATGCCGACGTGGAAATGGGGCAAATCGATCCATACAGCATCTACACCCCTCCTTGCTTGAACAGTACTGGAACATATGGAAAACAATTAAAAAAAGTGAAGTCATGGAGGCATCTGTTTGGGGGATATGACCCTTGCACTGAAAAATATTCCAAAATTTACTTCAATCTACCTGAGGTACAAAAGGCTCTTCACGCCAATGTTACAGGAATTCCTTATGAATGGACGACTTGCAGTGATGCAGTTGGTGAAAACTGGGGAGACTCTCCTAGATCTGTGCTATCAATTTACCGAGAGCTTATAAAAGCTGGACTACGCATTTGGATGTTCAGTGGAGATACAGATGCAGTGATTCCTGTAACATCTACCAGAAATTCTATAAATGCGCTTAAGCTTCGCACGGTTACTCACTGGCATCCTTGGTATGACAATGGGCAGGTGGGAGGATGGACTCAAGTATACGAAGGGCTGACATTTGTAACAATTAGAGGAGCAGGCCATGAGGTTCCATTGCATGAACCTGAAAAGGCCTTCGTACTCTTCAAGTCATTCTTAGAAGGAAAACCGATGCCAGTCTCCACAAACCTTGTAGATACTTTATAG___TGATTGTTAAAGCCAGAGGAGATTTTAGCACCTATTTCTAAATTCATTTCATTCATATATTACGTGGGAGTTCTGAAATCAAGGTGCTTGTAGAAAAACAACAATTCAGCATTGATTATGTCATCCAAATTATGAATTGTCCATGATGTAGAGGTCCAGGATTGATTTGGTATCTTTGTTATTATTACTTTGTATGTTGAAATTGTCATAAAGCAACAGTGATATCATATATAAATATTCAATGCAAGGAGACCATGCATTTGTAAACAGCCTATGGACTACCCGGCTCATGACAATCTTGATGACTAAGTTCTTTCATTTCTGAATTTTAAAGGTGGGC

Fln Alignment:

Contig3540___STATWEESNEIDWRNEQARDKITELPGLPSNANFAQYSGYITVDKNAGRALFYWLIEATEDPSSKPLVLWLNGGPGCSSVAYGEAEELGPFHINSDGKTLHLNPYSWNRLANILFLDSPAGVGFSYTNTSSDISKSGDKRTAEDSHTFLLNWLERFPQYKNREFYIAGESYGGHYVPQLAQVIYRHNMDLENPAINLKGYMVGNGVTDDFHDRVGIFQFMWSHGLISDNTFRMLNVFCDFSSLVHPSSLCEKALEYADVEMGQIDPYSIYTPPCLNSTGTYGKQLKKVKSWRHLFGGYDPCTEKYSKIYFNLPEVQKALHANVTGIPYEWTTCSDAVGENWGDSPRSVLSIYRELIKAGLRIWMFSGDTDAVIPVTSTRNSINALKLRTVTHWHPWYDNGQVGGWTQVYEGLTFVTIRGAGHEVPLHEPEKAFVLFKSFLEGKPMPVSTNLVDTL
A9NUH4______________ATSTWEESNERDWRNEQAKDRITQLPGQPSNVNFAQYSGYITVDNNAGRALFYWLIEATENPSSKPLVLWLNGGPGCSSVAYGEAEELGPFHINADGKSLYLNPYSWNKLANILFLDSPAGVGFSYTNTSSDISQSGDRRT-------------------------------GHYVPQLAQVIYKRSKGLANPVINLKGYMVGNGVTDDFHDIVGIFEYMWSHGLISDNTYRLLNVLCDFSSLLHPSALCNMALDKADVEMGEIDPYSIYTPPCLNSTGTYRKQHRKRYPWRHLFGEYDPCTEKHSEIYFNLPEVQKALHANVTGIPYRWTTCSDAVADHWGDSPRSMLPIYQELIKAGLRIWMFSGDTDAVIPVTSTRYSINALKLPTVTQWHPWYDNGQVGGWTQVYEGLTFVTVRGAGHEVPLHEPRKAFTVFESFLEGKPMPVSPKLVDTL

SNPs (tot: 26)

Position	A %	C %	G %	T %	Probability
1467		16	83		0.999991
1496		87		12	0.999964
1694	10	90			0.90298
1725			88	11	0.923564
1757	88	11			0.923564
1779	37		62		1.0
1783	12		87		0.992554
1784	12	87			0.992554
1787		85		14	0.993533
1800	83	16			0.994512
1801	83	16			0.994512
1803	83			16	0.994512
1825	33			66	0.997452
1826		33	66		0.997452
1827	66		33		0.997452
1828		33	66		0.997452
1829	33			66	0.997452
1830		33	66		0.997452
1832		66	33		0.997452
1833	66			33	0.997452
1834		33	66		0.997452
1839		33	66		0.997452
1841	33			66	0.997452
1842	33	66			0.997452
1845		66	33		0.997452
1847	66		33		0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain