SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3525

Length: 3466 nt

UniGene Fasta

>sp_v3.0_unigene3525
TACCACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGAGGGAACGCGGAAATGTTTGAGAGGACCATGGCCAACCTCTTCAACAGCTTGTTCTGTGCACGAATCTAGCTGTAATTTCCAGGAAGGAGAAGGGAAATGTGGGGCACTGGAAGAAGTCATCATTCTGGTTCACAATTTTTATGGTGTTATATTCATAGAAGGGAGGTCTCATTTTAGTATTTGATGTATCCAGTGAAGCTCTGGATATAGAGCAATCAATTTCAAAATCTGAGAATCAAGGACTTGGAGGGTCTCTAGGATCTTCTCTTGAATTACTAGAGACCGAGAATGAACATTCATTGGGCTTGTTTATTAACAAAGATGAAGACAATTGTAGACCCCTCTTTTTTCCTCATCTGTGCTACAATTGTTATCTCCCTTTTGGACATCAAAATTTCTACCTATGTTGTTGCACAACGCCCAGAGGATATTCTTTTGAGCTGTGGGTATTCAGGGAAGGCAAAGGATGGAGATGGGAGAACCTGGGTTGGAGACATAGGATCCAGATTTGCTCCATCTTCAAAGAATACCCAGCAGGCTACTGCTGCTAATCAGGATCCTAGCCTTCCTTCTGTGACTCCATACATGACGGCAGATATTTTCACAGGGGAATCCACCTACAGTTTTCCAGTATCGGGTGGCAGGCATTGGGTGAGGCTTTATTTCTACCCATCTTCTTATAATGGTCTTGCCCCTGAAGATGCCTTCTTCACTGTTCGTGCCGGAGGCTACACCATGCTGAAGAATTTCAGTGCATCGATCACTGCTCAAGCCCTTACCCAAGCATACATCATTAAGGAGTTTTCCTTCGCTAATTCTCCAGGTCTGCTTAACATCACCTTTGTTCCAGAGAAGGGCAACAAATCTTATGCATTTGTGAATGGGATTGAGATTGTATCTATTCCTGACCTGTTCAACATGACGCAGCCAATGCTTGCTGGACTGAATGTACCATACAATATTGACTCGAGCATCACATTGGAGACCATGATTAGATTGAATGTAGGAGGACAATCTCTTTCACCAGTTGAAGATTCAGATCTCAGCAGAACTTGGTATGATGATACACCATATGTTTTTGGAGCTGCTGTTGGGATAACTATTTCTGCTGATCCCAATACCAGTATGCTGTATTCTGACAGTGTGCCACCATATATTGCACCGCCAGATGTTTACAGTACTGCACGTTCCATGGGTCCAGTGAACGACATTAACCTGAAATACAATTTGACCTGGTTGGTATCAGTGGATTCTGGTTTTAATTACTTAGTCCGCCTCCACTTTTGTGAACTTATTTACACAAAAATGAACCAGAGAGTTTTTGATATTTTCATTCATAACCAGACTGTTGAAACACAATTTGATGTGATAGCATCGACCCAAGCACAGAACACTCCAATGTTCAAGGATTATGTTGTATATGTTGAACCTCAATCCAGCAGCTCAAATTTGTGGGTTGCTATCCATCCTGATCCATCTACTAAGCCACAGTACTATGATGCGATCCTAAATGGGCTGGAGATTTTTAAGCTGAATGATAGCTCAGGAAATCTTGCAGGACCAAATCCAACACCGGCCCCTGCAATGCCTCCTGTAGCTGCAGCTACGCAGAAGCCTGGAGAGAAATCTTCTAAATCTACTAGCAAAGTTCCACTAATTGGGGGTGTAACAGGAGGTTTTCTTGCATTAGGCTTGGTTTCTGCACTTTGCTGTTTAGTGTGCCGTCGCAGGGGAACGATGACTGGAGAGGAGGGGCCTTCTGGATGGCTTCCCCTGGCCTTTTATGGAGGGAACTCCCATACCATGGGCAGTAAAGCTTCTAGGAAAAGTGGCACTGGCAGCTATGCTTCATGTGCACCGGCAGGTCTCTGTAGGCACTTTACACTTGCAGAGATCAAAGAGGCCACTAATGAATTCGATGAATCCCGGGTGATTGGTGTGGGCGGTTTTGGGAAAGTCTATCAAGGAGAGATTGATGGAGGCACCAAGGTTGCAGTGAAAAGAGGAAATCCACTTTCTGAACAGGGTATCAATGAATTTCAGACTGAGATAGAGTTGCTTTCCAAGCTTCGCCATAGACATTTGGTGTCTCTCATTGGTTACTGTGAAGATAATTGTGAGATGATTCTGGTCTATGATTACATGGCTTATGGTACACTGCGAGGCCACCTATACAAGAGTGACATGCCTCCTTTGTCCTGGAAGCAGAGACTAGAGATCTGTATTGGAGCTGCTCGCGGTCTGCATTATCTCCACACAGGGGCAAAGCACACCATCATTCACCGTGATGTAAAGACCACCAATATACTTCTGGATGAAAAGTTTGTTGCAAAAGTTTCAGATTTTGGCCTCTCCAAGACTGGCCCAACTCTGGATCACACTCATGTGAGCACTGTAGTGAAAGGCAGTTTTGGATACCTGGATCCAGAATATTTCCGTCGGCAGCAGCTCACTGAAAAGTCAGATGTTTATTCGTTTGGAGTTGTGTTATTTGAGGTGTTATGTGCACGACCTGCTCTTAATCCAACGCTTCCAAGAGAACAGGTAAGCCTTGCTGAATGGGCTCTGCACTGTCTGAAGAAGGGGACTTTGGAGCATATTATAGATCCTCATTTGAAAGGAAAAATAAACCCTGAATCCCTTCAAAAGTTTGCAGAGACAGCTGAAAAGTGTCTTGCTGATCAAGGAATTGATAGACCACCTATGGGAGATGTGCTTTGGAACTTAGAGTTCACTTTGCAACTTCAAGAAACTGCTATTGAAAATAAAATGGTCGATGACAGCATTGCAGACTTCGCTGAAGCACCACTGAAGTTTAACTGCGCAAAAGCTTCTCCAGATCATGTTACAGGCAGCCACAGCATAGGAATTAGCATTGGAGGTCAGAGTATGACAAGTGAGAGCTCAGATGATGTGACACCAAGTATGGTGTTTTCACAGCTAGTGAATCCCAAAGGGCGCTAGTTTACCAGGTGGCTTACATCCCCTGGGAGTATTAGCTATAAAAAAATACAGGTATATTTGGCTTCTTGAGGTCCTTATTGTTGGGTCAAGTCTTCAATTTCATTTGTTTGTATCACACAGTTTAATGTTATCATTTAAGTACAAAGACACTCGCAACAATAGTTTGATGGGATTCATTTGTAATGTTCTCATACAACTTTATAGTTAGTTTGAACGCTTTGGCGTCCATATTCTAAGTAGGAATATTTCTTTATCAAGGATCAAAGGTTCTCTGAAGGATTAAGTCTTCTTTGTCCTAGGAAATAGACGGCCTTGCTGACCTGAAGTTCTGTTCGTAAACTATATGCATCATTGATACGATGCAGTTTCTCATTGTATCAGCCAATTCAATGACTATTCAGTATTAATGGGGACCTGGAAAGGCTCAATAAGTTATTTATTCTTCAATAAGACATCCAT

Ace file of the UniGene sp_v3.0_unigene3525

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Kinase, putative n=2 Tax=rosids RepID=B9SRU2_RICCO	-	-	0.0	59%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	44%
Sma3	FERONIA receptor-like kinase	-	-	6.226e-18	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	9.962e-15	-

Source	Gene names
Sma3	AT4g39110; At1g30570; At2g21480; At2g39360; At3g04690; At3g46290; At3g51550; At4g39110; At5g24010; At5g28680; At5g38990; At5g39000; At5g54380; At5g59700; At5g61350; B1143G03.32; F12M12.260; F18L15.10; F19H22.210; F26O13.190; F7O18.16; FER; Fen; GSVIVT0000

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	protein autophosphorylation	GO:0046777	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Histone-like bacterial DNA-binding protein	IPR000119	-	-
Sma3	Oxidoreductase, molybdopterin-binding domain	IPR000572	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Zinc finger, RING-type	IPR001841	-	-
Sma3	Peptidase aspartic, active site	IPR001969	-	-
Sma3	Isopenicillin N synthase, conserved site	IPR002057	-	-
Sma3	Short-chain dehydrogenase/reductase SDR	IPR002198	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Peptidase S16, lon N-terminal	IPR003111	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	Tetratricopeptide-like helical	IPR011990	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Zinc finger, RING-type, conserved site	IPR017907	-	-
Sma3	Zinc finger, C3HC4 RING-type	IPR018957	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3	Peroxidase, active site	IPR019794	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G51550.1	FER Malectin/receptor-like protein kinase family protein chr3:19117877-19120564 REVERSE LENGTH=895	59%
RefSeq	Arabidopsis thaliana	NP_190723.1	receptor-like protein kinase FERONIA [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002308259.1	predicted protein [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LKY1

Fln msg: your sequence is longer than subject: 892 - 431

Fln protein: MNIHWACLLTKMKTIVDPSFFLICATIVISLLDIKISTYVVAQRPEDILLSCGYSGKAKDGDGRTWVGDIGSRFAPSSKNTQQATAANQDPSLPSVTPYMTADIFTGESTYSFPVSGGRHWVRLYFYPSSYNGLAPEDAFFTVRAGGYTMLKNFSASITAQALTQAYIIKEFSFANSPGLLNITFVPEKGNKSYAFVNGIEIVSIPDLFNMTQPMLAGLNVPYNIDSSITLETMIRLNVGGQSLSPVEDSDLSRTWYDDTPYVFGAAVGITISADPNTSMLYSDSVPPYIAPPDVYSTARSMGPVNDINLKYNLTWLVSVDSGFNYLVRLHFCELIYTKMNQRVFDIFIHNQTVETQFDVIASTQAQNTPMFKDYVVYVEPQSSSSNLWVAIHPDPSTKPQYYDAILNGLEIFKLNDSSGNLAGPNPTPAPAMPPVAAATQKPGEKSSKSTSKVPLIGGVTGGFLALGLVSALCCLVCRRRGTMTGEEGPSGWLPLAFYGGNSHTMGSKASRKSGTGSYASCAPAGLCRHFTLAEIKEATNEFDESRVIGVGGFGKVYQGEIDGGTKVAVKRGNPLSEQGINEFQTEIELLSKLRHRHLVSLIGYCEDNCEMILVYDYMAYGTLRGHLYKSDMPPLSWKQRLEICIGAARGLHYLHTGAKHTIIHRDVKTTNILLDEKFVAKVSDFGLSKTGPTLDHTHVSTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPALNPTLPREQVSLAEWALHCLKKGTLEHIIDPHLKGKINPESLQKFAETAEKCLADQGIDRPPMGDVLWNLEFTLQLQETAIENKMVDDSIADFAEAPLKFNCAKASPDHVTGSHSIGISIGGQSMTSESSDDVTPSMVFSQLVNPKGR*

Protein Length: 893

Fln nts: TACCACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGAGGGAACGCGGAAATGTTTGAGAGGACCATGGCCAACCTCTTCAACAGCTTGTTCTGTGCACGAATCTAGCTGTAATTTCCAGGAAGGAGAAGGGAAATGTGGGGCACTGGAAGAAGTCATCATTCTGGTTCACAATTTTTATGGTGTTATATTCATAGAAGGGAGGTCTCATTTTAGTATTTGATGTATCCAGTGAAGCTCTGGATATAGAGCAATCAATTTCAAAATCTGAGAATCAAGGACTTGGAGGGTCTCTAGGATCTTCTCTTGAATTACTAGAGACCGAGA_-_ATGAACATTCATTGGGCTTGTTTATTAACAAAGATGAAGACAATTGTAGACCCCTCTTTTTTCCTCATCTGTGCTACAATTGTTATCTCCCTTTTGGACATCAAAATTTCTACCTATGTTGTTGCACAACGCCCAGAGGATATTCTTTTGAGCTGTGGGTATTCAGGGAAGGCAAAGGATGGAGATGGGAGAACCTGGGTTGGAGACATAGGATCCAGATTTGCTCCATCTTCAAAGAATACCCAGCAGGCTACTGCTGCTAATCAGGATCCTAGCCTTCCTTCTGTGACTCCATACATGACGGCAGATATTTTCACAGGGGAATCCACCTACAGTTTTCCAGTATCGGGTGGCAGGCATTGGGTGAGGCTTTATTTCTACCCATCTTCTTATAATGGTCTTGCCCCTGAAGATGCCTTCTTCACTGTTCGTGCCGGAGGCTACACCATGCTGAAGAATTTCAGTGCATCGATCACTGCTCAAGCCCTTACCCAAGCATACATCATTAAGGAGTTTTCCTTCGCTAATTCTCCAGGTCTGCTTAACATCACCTTTGTTCCAGAGAAGGGCAACAAATCTTATGCATTTGTGAATGGGATTGAGATTGTATCTATTCCTGACCTGTTCAACATGACGCAGCCAATGCTTGCTGGACTGAATGTACCATACAATATTGACTCGAGCATCACATTGGAGACCATGATTAGATTGAATGTAGGAGGACAATCTCTTTCACCAGTTGAAGATTCAGATCTCAGCAGAACTTGGTATGATGATACACCATATGTTTTTGGAGCTGCTGTTGGGATAACTATTTCTGCTGATCCCAATACCAGTATGCTGTATTCTGACAGTGTGCCACCATATATTGCACCGCCAGATGTTTACAGTACTGCACGTTCCATGGGTCCAGTGAACGACATTAACCTGAAATACAATTTGACCTGGTTGGTATCAGTGGATTCTGGTTTTAATTACTTAGTCCGCCTCCACTTTTGTGAACTTATTTACACAAAAATGAACCAGAGAGTTTTTGATATTTTCATTCATAACCAGACTGTTGAAACACAATTTGATGTGATAGCATCGACCCAAGCACAGAACACTCCAATGTTCAAGGATTATGTTGTATATGTTGAACCTCAATCCAGCAGCTCAAATTTGTGGGTTGCTATCCATCCTGATCCATCTACTAAGCCACAGTACTATGATGCGATCCTAAATGGGCTGGAGATTTTTAAGCTGAATGATAGCTCAGGAAATCTTGCAGGACCAAATCCAACACCGGCCCCTGCAATGCCTCCTGTAGCTGCAGCTACGCAGAAGCCTGGAGAGAAATCTTCTAAATCTACTAGCAAAGTTCCACTAATTGGGGGTGTAACAGGAGGTTTTCTTGCATTAGGCTTGGTTTCTGCACTTTGCTGTTTAGTGTGCCGTCGCAGGGGAACGATGACTGGAGAGGAGGGGCCTTCTGGATGGCTTCCCCTGGCCTTTTATGGAGGGAACTCCCATACCATGGGCAGTAAAGCTTCTAGGAAAAGTGGCACTGGCAGCTATGCTTCATGTGCACCGGCAGGTCTCTGTAGGCACTTTACACTTGCAGAGATCAAAGAGGCCACTAATGAATTCGATGAATCCCGGGTGATTGGTGTGGGCGGTTTTGGGAAAGTCTATCAAGGAGAGATTGATGGAGGCACCAAGGTTGCAGTGAAAAGAGGAAATCCACTTTCTGAACAGGGTATCAATGAATTTCAGACTGAGATAGAGTTGCTTTCCAAGCTTCGCCATAGACATTTGGTGTCTCTCATTGGTTACTGTGAAGATAATTGTGAGATGATTCTGGTCTATGATTACATGGCTTATGGTACACTGCGAGGCCACCTATACAAGAGTGACATGCCTCCTTTGTCCTGGAAGCAGAGACTAGAGATCTGTATTGGAGCTGCTCGCGGTCTGCATTATCTCCACACAGGGGCAAAGCACACCATCATTCACCGTGATGTAAAGACCACCAATATACTTCTGGATGAAAAGTTTGTTGCAAAAGTTTCAGATTTTGGCCTCTCCAAGACTGGCCCAACTCTGGATCACACTCATGTGAGCACTGTAGTGAAAGGCAGTTTTGGATACCTGGATCCAGAATATTTCCGTCGGCAGCAGCTCACTGAAAAGTCAGATGTTTATTCGTTTGGAGTTGTGTTATTTGAGGTGTTATGTGCACGACCTGCTCTTAATCCAACGCTTCCAAGAGAACAGGTAAGCCTTGCTGAATGGGCTCTGCACTGTCTGAAGAAGGGGACTTTGGAGCATATTATAGATCCTCATTTGAAAGGAAAAATAAACCCTGAATCCCTTCAAAAGTTTGCAGAGACAGCTGAAAAGTGTCTTGCTGATCAAGGAATTGATAGACCACCTATGGGAGATGTGCTTTGGAACTTAGAGTTCACTTTGCAACTTCAAGAAACTGCTATTGAAAATAAAATGGTCGATGACAGCATTGCAGACTTCGCTGAAGCACCACTGAAGTTTAACTGCGCAAAAGCTTCTCCAGATCATGTTACAGGCAGCCACAGCATAGGAATTAGCATTGGAGGTCAGAGTATGACAAGTGAGAGCTCAGATGATGTGACACCAAGTATGGTGTTTTCACAGCTAGTGAATCCCAAAGGGCGCTAG___TTTACCAGGTGGCTTACATCCCCTGGGAGTATTAGCTATAAAAAAATACAGGTATATTTGGCTTCTTGAGGTCCTTATTGTTGGGTCAAGTCTTCAATTTCATTTGTTTGTATCACACAGTTTAATGTTATCATTTAAGTACAAAGACACTCGCAACAATAGTTTGATGGGATTCATTTGTAATGTTCTCATACAACTTTATAGTTAGTTTGAACGCTTTGGCGTCCATATTCTAAGTAGGAATATTTCTTTATCAAGGATCAAAGGTTCTCTGAAGGATTAAGTCTTCTTTGTCCTAGGAAATAGACGGCCTTGCTGACCTGAAGTTCTGTTCGTAAACTATATGCATCATTGATACGATGCAGTTTCTCATTGTATCAGCCAATTCAATGACTATTCAGTATTAATGGGGACCTGGAAAGGCTCAATAAGTTATTTATTCTTCAATAAGACATCCAT

Fln Alignment:

Contig3525___FTLAEIKEATNEFDESRVIGVGGFGKVYQGEIDG----------GTKVAVKRGNPLSEQGINEFQTEIELLSKLRHRHLVSLIGYCEDNCEMILVYDYMAYGTLRGHLYKSDMPPLSWKQRLEICIGAARGLHYLHTGAKHTIIHRDVKTTNILLDEKFVAKVSDFGLSKTGPTLDHTHVSTVVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLFEVLCARPALNPTLPREQVSLAEWAL-HCLKKGTLEHIIDPHLKGKINPESLQKFAETAEKCLADQGIDRPPMGDVLWNLEFTLQLQETA
B8LKY1______________FTFNELKSATRNFRPESVLGGGGFGYVFKGWIEENGTAAVKPGTGLTVAVKTLNPDGLQGHKEWLAEVNFLGQLRHANLVKLIGYCIEDNQRLLVYEYMPRGSLENHLFRKGALPLPWSTRMKIALGAAKGLEFLHGGAEKAVIYRDFKTSNILLDSEYNAKLSDFGLARDGPEGDKTHVSTRVMGTYGYAAPEYVMTGHLTSKSDVYSFGVVLLEMLTGRRSIDKHRSNGEQNLVEWARPYLVDKRKLYRLVDPRLSGHYSIKGAQKVAQLAHYCLSRDPKARPTMNDVVEVLTPLLSLKDTA

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
2800	33			66	0.997452
2887	83		16		0.994512
2891			16	83	0.994512
2894	83	16			0.994512
2898	83			16	0.994512
2900		83		16	0.994512
2959		14		85	0.993533
2961	85			14	0.993533
2963	85		14		0.993533
2964		85		14	0.993533
2965		85	14		0.993533
2967	85	14			0.993533
2968		14	85		0.993533
2977		14		85	0.993533
2978	14			85	0.993533
2987	80	20			0.999996
2992	77	22			0.999999
2995		77		22	0.999999
2996		77		22	0.999999
2997	77		22		0.999999
2998	77		22		0.999999
2999	77	22			0.999999
3000			77	22	0.999999
3002			77	22	0.999999
3004	22		77		0.999999
3063		16		83	0.994512
3064	83		16		0.994512
3066		16		83	0.994512
3069	16		83		0.994512
3071		16		83	0.994512
3075			16	83	0.994512
3077	83	16			0.994512
3078			83	16	0.994512
3084		16		83	0.994512
3087		18		81	0.999994
3097	83	5		11	0.999887
3105	88	11			0.999937

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain