SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3511

Length: 2808 nt

UniGene Fasta

>sp_v3.0_unigene3511
CTGGCAGTATCGCAGCTAACCGCGTACAAACGGTGGACTAACGGCGTGACAGGCCAGCGGCCATCTTTGTCTGCTTTCTCGCAGAACAGTGGGGGCTCACACGATCGTTGTTGTTAATCCAGTGAAAGGGTATATTGCAGAGGCTAAAATAAAAACTTTTCGTGACGCGGACTGGAACTCGAGACCGCGGTCTAGGTCAGATAATGGAATCGACGCTCACGGATCCGGCCCCAGGCCTTTGAATCTGGGGACGCTGATGGTGGTAGAGGTGGGCTTGGCTGTGTTTGAGGCGCAGGCGTTTTCACCTTTTGGAGACAGCGGGTTTTATTTGTTCTGCCTGGGCCGTTGCTCTGTTCGGTTCTCTTTTCTTTATCTCTGGCTTTTGTCAGCTCTCAGGCCGTTATTATTGCGCTTTGTTCTTTTATTCTTTCCCCGTCGTCGCTTCGCTTACCGCCCGGGGCGGTTAAATGCCGTGGCGTTGCGAAATATCGCACATTTTCTGTTGTTGTTGTATCAGGGAGAGTGATATTCTTTCTCGGCTCTCTTTTCTCTCTGGCAAGCGGAGAGAAGAGGGGGAGGAGCAAATCCGGGGCATTTAAGCAGCAAAGTACGCATTTTGTAACTAACCTGCCGCAACAGTGCAGAAAACGGCTGTTTCAAAGGCCTCGGGGAAGCTTCTTCGGCGTTGTCTTTAAAAGACGAGAAGATGATCGAGCAGTTTATCAATTTTGTCATTCGGCCCCCCAGGGCAGAATACAATCCAGATCAGTACCTTTGGGAGAAGGAATTTACTCTTGCAGGGAGGAAGTACTGTAGACAGGATTTGGAGATCAGAAATGACCGGGGCCATGTCTTGCAATGTAGTCACTATCTTCCATCGCCTCTCCCAGAAGGCACATCACTTCCTTGTGTTATATACTGCCATGGAAACAGTGGTTGTCGAGCAGATGCCAATGAGGCAGCAGTCATACTCCTTCCTTCAAACATAACTGTTTTTACTCTTGATTTCTCGGGTTCAGGCCTCTCTGATGGTGATTATGTGAGCCTTGGTTGGCATGAGAAAGATGACCTCAAAGCTGCTGTTTCTTACCTTCGAAATACAAAAAATGTTTCTTGCATTGGACTTTGGGGACGATCAATGGGAGCTGTGACAAGCCTTCTTTATGGAGCAGAGGATCCATCAATTGCTGGGATGGTGTTGGATAGTCCTTTCTCTAATTTGTTCGATCTCATGATGGAGCTGGTTGACGTTTATAAAATTCGCCTCCCCAAGTTCACGGTCAAAGTAGCTGTCCAGTACATGCGGCGTGTAATCCAAAAGAAAGCCAGTTTTGATATAATGGACCTCAATGCTACGCAGATTGCTCCAAAAACCTTCATTCCAGCACTGTTTGGTCATGCAACTGAGGATGTGTTCATCCAGCCACACCATTCTGATGTCATCTTCAAACTATATGCGGGGGACAAGAATGTTATAAAGTTTGAGGGTGATCATAACTCTGCACGTCCCCAGTTCTACTATGACTCAGTTTCTATCTTCTTCTATAATGTCCTGCATCCTCCTCAGTTGTCAGCTATGGGTGCTACTGCAGCTGATAAATATTTCAATCTTGGAGCTTTACAGATGGGCCATGATTTGGATGAGAGTTTGTTGTATGAGATTATCACTGGGCTGCGTATGGTGGAGCCTGGTTCAGCTAGCTCGTCTTCAGCACCTTGCATGACTGATGGATTGAGCATGCCTCTACAAAATAAAGCGCTTCAGCAGCCTGAGTCTTCCTTGCAGACAGAAAAAAAGATGGCTGTCTCAGAAGGTACTGTAGAGCAAGAAGATGTTATAATTGAGCTAACAAGAGAAGATATGGAGTCATCTTTGGGACAGGGCAAAGGAAGTGGGCAGAATGATGAGTGCTTCTCACATTCAAGCTCAAATCATGAAAGCTGGGGAAGATGCTCTTCTTTGGGAATCAGCGATGAAGAATCATCCTTGGAAAACTTTGCTCGTTGTTCTTCGAATCTGAATGATGTACAACAGGCTGTTGTATCATCACATCATAAGACAGAAGTTGCCAAGGACGAGGAGAAAATTGATAGAGTCAGAGGGTTGATTGCCTTCAAGAAAGGTCCAAGAAGTGAGAAATTGGAAGCTTTGAGTCAGAGGGTAAGATTGAGCATCCTAAAAAGGATACGTCATACAAGGACCAGTTCTACGTGATTTTTTGTATTATCAGGAAGGATGTCGCTCAGCCCTTTTAAATATATTCTCTAAGGGTTTTATTGTTAATGAAACAGGAACGAAACTTCATGGTTTCTTCTTGTTTTCTTGTTTGTTAATATACTTCAATCTCTTTCAGATGTATATCATAATTTTCCATTGCCATGTGCATATTGATGAACAGACACTAACTGAAATTAATCTGTATCATAAAATTGTTACTTGCCTACGATTTGCTTCATTGAAGATTTTTTCAGTATGTATTAGGTAGAGAAGATTGTATCCTTTAAAAGGCATCTGGAGGGAGAGATTTCCAATTCTGTATCGCTAGTTGACAGGTTTCTAAGTGGTGAGTCATATTTTTAATGCTGTAATTACTCTGTTGTAGGAAATGGATTATTTTACAGTTGGTTCAAACCACACCATGTGATTTTTTTCTAGAGCTCCAATTCAGTTTTTTATAACTCTACTTCCACCACAAGGGAGACAATGTTCCAGGCAATTAGAACCTTGTGATTACGATACCCTAAACCTACTTGATTGCAAATAGTGATTGCAAATAGTAATTTTTATAGCATATTTGAAGTATTTTT

Ace file of the UniGene sp_v3.0_unigene3511

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Catalytic, putative n=1 Tax=Ricinus communis RepID=B9SGX0_RICCO	-	-	0.0	66%
FL-Next	tr=Catalytic, putative; Ricinus communis (Castor bean).	-	-	0.0	66%

Source	Gene names
Sma3	AT4g14290; AT4g17150; At3g23540; At4g17150; At4g17150/dl4610w; CHLREDRAFT_188508; GSVIVT00011847001; GSVIVT00019882001; LOC_Os03g24450; MICPUCDRAFT_24751; MICPUN_79723; OJ1524_D08.35; Os02g0197900; Os03g0359000; Os06g0609700; OsI_06247; OsI_11646; OsI_236

Source	InterPros	Term	Type	Identity
Sma3	Alpha/beta hydrolase fold-1	IPR000073	-	-
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Ubiquitin interacting motif	IPR003903	-	-
Sma3	Translation elongation factor EFTu/EF1A, C-terminal	IPR004160	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G17150.1	alpha/beta-Hydrolases superfamily protein chr4:9638591-9641648 FORWARD LENGTH=502	62%
RefSeq	Arabidopsis thaliana	NP_193448.2	esterase/lipase domain-containing protein [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002315536.1	predicted protein [Populus trichocarpa]	63%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: B9SGX0

Fln msg:

Fln protein: MIEQFINFVIRPPRAEYNPDQYLWEKEFTLAGRKYCRQDLEIRNDRGHVLQCSHYLPSPLPEGTSLPCVIYCHGNSGCRADANEAAVILLPSNITVFTLDFSGSGLSDGDYVSLGWHEKDDLKAAVSYLRNTKNVSCIGLWGRSMGAVTSLLYGAEDPSIAGMVLDSPFSNLFDLMMELVDVYKIRLPKFTVKVAVQYMRRVIQKKASFDIMDLNATQIAPKTFIPALFGHATEDVFIQPHHSDVIFKLYAGDKNVIKFEGDHNSARPQFYYDSVSIFFYNVLHPPQLSAMGATAADKYFNLGALQMGHDLDESLLYEIITGLRMVEPGSASSSSAPCMTDGLSMPLQNKALQQPESSLQTEKKMAVSEGTVEQEDVIIELTREDMESSLGQGKGSGQNDECFSHSSSNHESWGRCSSLGISDEESSLENFARCSSNLNDVQQAVVSSHHKTEVAKDEEKIDRVRGLIAFKKGPRSEKLEALSQRVRLSILKRIRHTRTSST*

Protein Length: 504

Fln nts: CTGGCAGTATCGCAGCTAACCGCGTACAAACGGTGGACTAACGGCGTGACAGGCCAGCGGCCATCTTTGTCTGCTTTCTCGCAGAACAGTGGGGGCTCACACGATCGTTGTTGTTAATCCAGTGAAAGGGTATATTGCAGAGGCTAAAATAAAAACTTTTCGTGACGCGGACTGGAACTCGAGACCGCGGTCTAGGTCAGATAATGGAATCGACGCTCACGGATCCGGCCCCAGGCCTTTGAATCTGGGGACGCTGATGGTGGTAGAGGTGGGCTTGGCTGTGTTTGAGGCGCAGGCGTTTTCACCTTTTGGAGACAGCGGGTTTTATTTGTTCTGCCTGGGCCGTTGCTCTGTTCGGTTCTCTTTTCTTTATCTCTGGCTTTTGTCAGCTCTCAGGCCGTTATTATTGCGCTTTGTTCTTTTATTCTTTCCCCGTCGTCGCTTCGCTTACCGCCCGGGGCGGTTAAATGCCGTGGCGTTGCGAAATATCGCACATTTTCTGTTGTTGTTGTATCAGGGAGAGTGATATTCTTTCTCGGCTCTCTTTTCTCTCTGGCAAGCGGAGAGAAGAGGGGGAGGAGCAAATCCGGGGCATTTAAGCAGCAAAGTACGCATTTTGTAACTAACCTGCCGCAACAGTGCAGAAAACGGCTGTTTCAAAGGCCTCGGGGAAGCTTCTTCGGCGTTGTCTTTAAAAGACGAGAAG_-_ATGATCGAGCAGTTTATCAATTTTGTCATTCGGCCCCCCAGGGCAGAATACAATCCAGATCAGTACCTTTGGGAGAAGGAATTTACTCTTGCAGGGAGGAAGTACTGTAGACAGGATTTGGAGATCAGAAATGACCGGGGCCATGTCTTGCAATGTAGTCACTATCTTCCATCGCCTCTCCCAGAAGGCACATCACTTCCTTGTGTTATATACTGCCATGGAAACAGTGGTTGTCGAGCAGATGCCAATGAGGCAGCAGTCATACTCCTTCCTTCAAACATAACTGTTTTTACTCTTGATTTCTCGGGTTCAGGCCTCTCTGATGGTGATTATGTGAGCCTTGGTTGGCATGAGAAAGATGACCTCAAAGCTGCTGTTTCTTACCTTCGAAATACAAAAAATGTTTCTTGCATTGGACTTTGGGGACGATCAATGGGAGCTGTGACAAGCCTTCTTTATGGAGCAGAGGATCCATCAATTGCTGGGATGGTGTTGGATAGTCCTTTCTCTAATTTGTTCGATCTCATGATGGAGCTGGTTGACGTTTATAAAATTCGCCTCCCCAAGTTCACGGTCAAAGTAGCTGTCCAGTACATGCGGCGTGTAATCCAAAAGAAAGCCAGTTTTGATATAATGGACCTCAATGCTACGCAGATTGCTCCAAAAACCTTCATTCCAGCACTGTTTGGTCATGCAACTGAGGATGTGTTCATCCAGCCACACCATTCTGATGTCATCTTCAAACTATATGCGGGGGACAAGAATGTTATAAAGTTTGAGGGTGATCATAACTCTGCACGTCCCCAGTTCTACTATGACTCAGTTTCTATCTTCTTCTATAATGTCCTGCATCCTCCTCAGTTGTCAGCTATGGGTGCTACTGCAGCTGATAAATATTTCAATCTTGGAGCTTTACAGATGGGCCATGATTTGGATGAGAGTTTGTTGTATGAGATTATCACTGGGCTGCGTATGGTGGAGCCTGGTTCAGCTAGCTCGTCTTCAGCACCTTGCATGACTGATGGATTGAGCATGCCTCTACAAAATAAAGCGCTTCAGCAGCCTGAGTCTTCCTTGCAGACAGAAAAAAAGATGGCTGTCTCAGAAGGTACTGTAGAGCAAGAAGATGTTATAATTGAGCTAACAAGAGAAGATATGGAGTCATCTTTGGGACAGGGCAAAGGAAGTGGGCAGAATGATGAGTGCTTCTCACATTCAAGCTCAAATCATGAAAGCTGGGGAAGATGCTCTTCTTTGGGAATCAGCGATGAAGAATCATCCTTGGAAAACTTTGCTCGTTGTTCTTCGAATCTGAATGATGTACAACAGGCTGTTGTATCATCACATCATAAGACAGAAGTTGCCAAGGACGAGGAGAAAATTGATAGAGTCAGAGGGTTGATTGCCTTCAAGAAAGGTCCAAGAAGTGAGAAATTGGAAGCTTTGAGTCAGAGGGTAAGATTGAGCATCCTAAAAAGGATACGTCATACAAGGACCAGTTCTACGTGA___TTTTTTGTATTATCAGGAAGGATGTCGCTCAGCCCTTTTAAATATATTCTCTAAGGGTTTTATTGTTAATGAAACAGGAACGAAACTTCATGGTTTCTTCTTGTTTTCTTGTTTGTTAATATACTTCAATCTCTTTCAGATGTATATCATAATTTTCCATTGCCATGTGCATATTGATGAACAGACACTAACTGAAATTAATCTGTATCATAAAATTGTTACTTGCCTACGATTTGCTTCATTGAAGATTTTTTCAGTATGTATTAGGTAGAGAAGATTGTATCCTTTAAAAGGCATCTGGAGGGAGAGATTTCCAATTCTGTATCGCTAGTTGACAGGTTTCTAAGTGGTGAGTCATATTTTTAATGCTGTAATTACTCTGTTGTAGGAAATGGATTATTTTACAGTTGGTTCAAACCACACCATGTGATTTTTTTCTAGAGCTCCAATTCAGTTTTTTATAACTCTACTTCCACCACAAGGGAGACAATGTTCCAGGCAATTAGAACCTTGTGATTACGATACCCTAAACCTACTTGATTGCAAATAGTGATTGCAAATAGTAATTTTTATAGCATATTTGAAGTATTTTT

Fln Alignment:

Contig3511___MIEQFINFVIRPPRAEYNPDQYLWEKEFTLAGRKYCRQDLEIRNDRGHVLQCSHYLPSPLPEGTSLPCVIYCHGNSGCRADANEAAVILLPSNITVFTLDFSGSGLSDGDYVSLGWHEKDDLKAAVSYLRNTKNVSCIGLWGRSMGAVTSLLYGAEDPSIAGMVLDSPFSNLFDLMMELVDVYKIRLPKFTVKVAVQYMRRVIQKKASFDIMDLNATQIAPKTFIPALFGHATEDVFIQPHHSDVIFKLYAGDKNVIKFEGDHNSARPQFYYDSVSIFFYNVLHPPQLSAMGATAADKYFNLGALQMGHDLDESLLYEIITGLRMVEPGSASSSSAPCMTDGLSMPLQNKALQQPESSLQTEKKMAVSEGTVEQEDVIIELTR--EDMESSLGQGKGSGQNDECFSHSSSNHESWGRCSSLGISDEESSLENFARCSSN---LNDVQQAVVSSHHKTEVAKDEEKIDRVRGLIAFK--KGPRSEKLEALSQRVRLSILKRIRHTRTSST
B9SGX0______________MIDQFINFVIRPPRAAYNPDQYLWERDFTLAGRAYKRLDLELTNIRGHTLQCSHYVPSPFPEDTPLPCVIYCHGNSGCRADANEAAVILLPSNITVFTLDFSGSGLSDGDYVSLGWHERDDLKVVVSYLRSSKQISRIGLWGRSMGAVTSLLYGAEDPSIAGMVLDSAFSNLFDLMMELVDVYKIRLPKFTVKMAVQYMRRVIQKKAKFDIMDLNCLKVAPKTFIPTLFGHASEDKFIQSHHSDLIFKSYAGDKNMIKFDGDHNSSRPQFYYDSLSIFFFNVLHPPQSNA-SSSNLEKYYNLGDLKVGAAIDESLLCEIITGLRSACTDAASSSAAP-----PSIP-----TIKPVSELISE---AVPVTSIAVDSVVNENDRISSDDPSKL-QDKPNGQSEECCSYTSSNRESWGRCSSLGCSDEESSAECRAADNSHEMALKAFATPLRSIQQKSPKAPKEEK-KKKKTLAAPKKLKGEKFEKLEAFSKRLRHCILRRVNHQRHRSS

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
746		90		10	0.90298
747	90			10	0.90298
749		10	90		0.90298
986		85		14	0.993533
987	83		16		0.994512
1102		83		16	0.994512
2222		2		78	1.0
2632	83	16			0.994512
2633	83		16		0.994512

SSRs (tot: 1)

Start position	End position	Sequence	Length
501	512	TGT TGT TGT TGT	12

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain