SustainPineDB

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Assembly info
Unigenes
SNPs
SSRs
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Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3510

Length: 439 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene3510
GTTGATCCTCTTATCATGCATGCTAAGTATCCCAAGGAACTTTGGGATGAGCTCTTCAAATTCCTATGTAGCCATGAAGGATGTGAGGCTATTATTCAATCCAAAAGCAGGTATGATGCAGCACAGGAACTGAAGAAATCTTGCCTTAAATCTCTTGCATTAGGAGAGATCATACATATATTGCACCTTGCCATAAAGGTTAAAAGATGGTTGAGACCAAGTCAGGCACAATGGTCTCCATTGACCATTACCATTGGCCAGAGATCTTTTGGATCTAAAACTGATGGTTATCAAGGAGGATCACCAACCTTTTCAGAGAAGTAAGAAATAGTTGTGCCAAAGAAGGCACACGATAGAGACAGAACTAGTGTTAGTTGAATGTATGAGTGCTAGTGCTATAGATCTTGTTGAGTAGGGCGTCAACAAATGTTCTGTGTTA

Ace file of the UniGene sp_v3.0_unigene3510 (antisense)

If you push the Download ace button, you will download an ace file of this UniGene.

To watch this ACE file you will need an ACE viewer program as Tablet:

Go to the Tablet ACE viewer Web

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Nucleic acid binding protein, putative n=1 Tax=Ricinus communis RepID=B9RFQ6_RICCO	-	-	1.0e-15	49%
FL-Next	tr=Nucleic acid binding protein, putative; Ricinus communis (Castor bean).	-	-	0.0	49%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9RFQ6

Fln msg: your sequence is shorter than subject: 108 - 703

Fln protein: VDPLIMHAKYPKELWDELFKFLCSHEGCEAIIQSKSRYDAAQELKKSCLKSLALGEIIHILHLAIKVKRWLRPSQAQWSPLTITIGQRSFGSKTDGYQGGSPTFSEK*

Protein Length: 109

Fln nts: GTTGATCCTCTTATCATGCATGCTAAGTATCCCAAGGAACTTTGGGATGAGCTCTTCAAATTCCTATGTAGCCATGAAGGATGTGAGGCTATTATTCAATCCAAAAGCAGGTATGATGCAGCACAGGAACTGAAGAAATCTTGCCTTAAATCTCTTGCATTAGGAGAGATCATACATATATTGCACCTTGCCATAAAGGTTAAAAGATGGTTGAGACCAAGTCAGGCACAATGGTCTCCATTGACCATTACCATTGGCCAGAGATCTTTTGGATCTAAAACTGATGGTTATCAAGGAGGATCACCAACCTTTTCAGAGAAGTAA___GAAATAGTTGTGCCAAAGAAGGCACACGATAGAGACAGAACTAGTGTTAGTTGAATGTATGAGTGCTAGTGCTATAGATCTTGTTGAGTAGGGCGTCAACAAATGTTCTGTGTTA

Fln Alignment:

Contig3510___KYPKELWDELFKFLCSHEGCEAIIQSKSRYDAAQELKKSCLKSLALGEIIHILHLAIKVKRWLRPSQAQWSPLTITIGQ
B9RFQ6______________EYPKATWDEIQKFLASSAGRSAIMSSQCRYEAATIIKSMCLKELALGNILQILNMVIALKKWIIHHQSGWQPLTITLAE

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
386	75			25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain