SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3506

Length: 2695 nt

UniGene Fasta

>sp_v3.0_unigene3506
GCATAAATATTATAAAAAAAGAAAAACCTAGAAAGTTAGTTTTTATTTTGTTCATGGGGCATTCTATGGCTGATTTAAGTGGAGTTCAAGAAAATCGTATCCCCAACCCGCATCTTGGTGCCTACATCAATCTGTTTATATCAACCAATCGTCACGACAAATTGGGGAAGAAAGGTCGTTCAAATGTGGCATGGTATATTCTCTGTGCATAATCTTCGTGTCTGGATTTTTTCCGGCCCAAGCAGATCATGGAGACTTGTTGTTAAACCATGATTAATTGACTTGATGGGTGTTTTCCAGTCTGAAATTTTGTGGAGGACTAGAACCAGTTTTTAATAGTTTGTTTTGGCGGATGAACTTTATCCTTCTGAAAGTTTTTGAGAACAAAAGGAATTAGCGGTTGTTTATGAAGAAGAGGCTCCATGACGGAGACTGGTGGCAATTCTCTTCCATCCGGACCGGATGGAATGAAGAGGAAAGTGGCATATTTTTATGACCCAGAGGTGGGGAATTATTACTATGGACAAGGGCATCCGATGAAGCCTCACCGCATAAGAATGACTCATGCCCTCCTTGTTCAGTATGGTTTGCATAAAGAAATGCAGATTCTTAAGCCCTACCCTGCGAGAGATAGAGATCTCTGCCGTTTCCATGCAGATGACTATGTAGCATTTTTACGAGGAATAACTCCGGAGACAATACAGGATCAAGTTAAGGCGTTGAAACGGTTTAATGTTGGGGATGATTGCCCGGTTTTTGATGGCTTGTACCAATACTGTCAAACTTATGCTGGTGGGTCTGTCGGAGGTGCTGTGAAACTCAATCATAAACTCTGTGACATTGCAATTAATTGGGCTGGGGGTCTTCATCATGCTAAAAAATGTGAGGCATCCGGATTTTGCTATGTGAATGACATTGTGCTGGCCATTCTGGAGCTCTTGAAATATCATAAGCGTGTTTTGTATGTTGATATTGACATTCACCATGGTGATGGAGTTGAGGAGGCTTTCTACACAACGGATAGGGTTATGACAGTATCATTTCACAAATTTGGGGACTATTTCCCAGGGACAGGTGACATTAGAGACATCGGGTGCGGGAAAGGGAAATATTATGCTGTAAATGTCCCTTTAGATGATGGAATTGATGATGAAAGTTTTCAGTCTCTGTTTAAACCTATTATTCAACAAGTGATGTTGGTTTACAATCCTGAGGCAATTGTTCTCCAGTGTGGAGCTGATTCTTTGTCTGGAGACAGGCTAGGTTGCTTTAACCTTTCTGTGAAAGGGCATGCAGAGTGTGTTCGATACATGAGGTCATTCAATGTGCCACTTCTGATGGTCGGTGGTGGTGGGTACACAGTTCGTAATGTTGCTCGTTGTTGGTGCTACGAGACAGGGGTTGCTGTTGGTGTGGAGATTGATGACAAAATGCCTCAACATGAATACTACGAATATTTTGGACCAGATTACACTGTTCATGTGGCTCCAAGTAATATGGAAAATAAGAACACGAAGCAGTATCTGGATAAAATTAGGTCCAAAATACTTGAAAACATTAATTCATTGCCATGTGCACCAAGTGCTCAATTCCAAGTGCAGCCTCCAGATACTGATTTCCCTGAACTGGAAGAAGAAGATTATGATGAACGTATTAGAAGTCATAAATGGGATGGAGCAAGTTGTGATTCTGATTCAGAGAATGGCGATTTAAAGCATCGTAATCATGATGTTGAGGAAAGTGCATTCCCACGGCATAATCTGGCGAATAATAGTTACAACACCAAGATTAAGCTAGAAGGTGTTGGTACAGGTGGTCTTGACATGGCTGCTGGAACAGACACAAAAAAGAATGACGAGTCCTCTGAAGCCATGGACTATGAAAGTGGAGAAGAGTTACGACAGGATCATTTTGCTTCTCCAATAAATGCTTCTCAGCCATATGATCCCGCTCTTTTGACAGGAGCTCAAAATCAGTTGCAGTCAACAGATACTGTAAAGCCCATAGAACAAGGTGGCAATGCTCCAGGAATACCACCACCTTCAGTTGCAACTGTAAGCACCGGCACTCGCCCGAGTTCATTTAGCCGGACATCATCTTTGAATTCCATGTCTTCAGCAAAGCAGGGTTCCATTTTGGGACCAAATCCTCTTCAAGGGCTGAATGCATCTGGTCTACAATTTCCAGTTCCAACTTCTGATTCACCTATAAGGCAAGGTGGGTCTTATTCTATAACTGTACAGGCCCCAGATAAGCAAGGTTTGCAAAATCATATGAAGGGACCTCAAAATATGCCAGGGAATTCTTGAAAATTATATATCCTTCTGCAATTTGAAACACAGGTTACTTTGTATAATGATAATGTAATGTCATCCCCTTGGTCACAATGTGCTTGTGATCAGTTTAGAAGCTAATTATACACTTAGAATGCTAATTGGTGATGTACTAAAACTTCTCTGTACTTTATTCTACTGTACTGTATTCGGAGATGCTGAAAATTTACTAAAACAAATGGAATATCAACAACCTAGGATCATTATGTCATATGACACCAGTTTAGAAGCTAATTATACACTTGGAATGCTAATTGGTGATGTGCCAAAATTTTCTGTACTTCATTCTACTGTACTGTATTTGAAGATGCTGAAAATTTACTAAAGCAAATGGAATATCAACAACCTAGGATCATTATATC

Ace file of the UniGene sp_v3.0_unigene3506

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Histone deacetylase (Fragment) n=2 Tax=Vitis vinifera RepID=D7TSU0_VITVI	-	-	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	84%
Sma3	Chromosome chr3 scaffold_8, whole genome shotgun sequence	-	-	-

Source	Gene names
Sma3	GSVIVT00036316001;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	histone deacetylase activity	GO:0004407	Molecular Function	-
Sma3	histone deacetylation	GO:0016575	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Histone deacetylase superfamily	IPR000286	-	0.0	-
Sma3	Histone deacetylase	IPR003084	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G38130.1	HD1, ATHD1, HDA1, RPD3A, HDA19, ATHDA19 histone deacetylase 1 chr4:17896493-17899057 REVERSE LENGTH=501	77%
RefSeq	Arabidopsis thaliana	NP_001078511.1	histone deacetylase 1/2 [Arabidopsis thaliana]	77%
RefSeq	Populus trichocarpa	XP_002313564.1	histone deacetylase [Populus trichocarpa]	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A979

Fln msg: your sequence is longer than subject: 629 - 145

Fln protein: MTETGGNSLPSGPDGMKRKVAYFYDPEVGNYYYGQGHPMKPHRIRMTHALLVQYGLHKEMQILKPYPARDRDLCRFHADDYVAFLRGITPETIQDQVKALKRFNVGDDCPVFDGLYQYCQTYAGGSVGGAVKLNHKLCDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKYHKRVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDIGCGKGKYYAVNVPLDDGIDDESFQSLFKPIIQQVMLVYNPEAIVLQCGADSLSGDRLGCFNLSVKGHAECVRYMRSFNVPLLMVGGGGYTVRNVARCWCYETGVAVGVEIDDKMPQHEYYEYFGPDYTVHVAPSNMENKNTKQYLDKIRSKILENINSLPCAPSAQFQVQPPDTDFPELEEEDYDERIRSHKWDGASCDSDSENGDLKHRNHDVEESAFPRHNLANNSYNTKIKLEGVGTGGLDMAAGTDTKKNDESSEAMDYESGEELRQDHFASPINASQPYDPALLTGAQNQLQSTDTVKPIEQGGNAPGIPPPSVATVSTGTRPSSFSRTSSLNSMSSAKQGSILGPNPLQGLNASGLQFPVPTSDSPIRQGGSYSITVQAPDKQGLQNHMKGPQNMPGNS*

Protein Length: 630

Fln nts: GCATAAATATTATAAAAAAAGAAAAACCTAGAAAGTTAGTTTTTATTTTGTTCATGGGGCATTCTATGGCTGATTTAAGTGGAGTTCAAGAAAATCGTATCCCCAACCCGCATCTTGGTGCCTACATCAATCTGTTTATATCAACCAATCGTCACGACAAATTGGGGAAGAAAGGTCGTTCAAATGTGGCATGGTATATTCTCTGTGCATAATCTTCGTGTCTGGATTTTTTCCGGCCCAAGCAGATCATGGAGACTTGTTGTTAAACCATGATTAATTGACTTGATGGGTGTTTTCCAGTCTGAAATTTTGTGGAGGACTAGAACCAGTTTTTAATAGTTTGTTTTGGCGGATGAACTTTATCCTTCTGAAAGTTTTTGAGAACAAAAGGAATTAGCGGTTGTTTATGAAGAAGAGGCTCC_-_ATGACGGAGACTGGTGGCAATTCTCTTCCATCCGGACCGGATGGAATGAAGAGGAAAGTGGCATATTTTTATGACCCAGAGGTGGGGAATTATTACTATGGACAAGGGCATCCGATGAAGCCTCACCGCATAAGAATGACTCATGCCCTCCTTGTTCAGTATGGTTTGCATAAAGAAATGCAGATTCTTAAGCCCTACCCTGCGAGAGATAGAGATCTCTGCCGTTTCCATGCAGATGACTATGTAGCATTTTTACGAGGAATAACTCCGGAGACAATACAGGATCAAGTTAAGGCGTTGAAACGGTTTAATGTTGGGGATGATTGCCCGGTTTTTGATGGCTTGTACCAATACTGTCAAACTTATGCTGGTGGGTCTGTCGGAGGTGCTGTGAAACTCAATCATAAACTCTGTGACATTGCAATTAATTGGGCTGGGGGTCTTCATCATGCTAAAAAATGTGAGGCATCCGGATTTTGCTATGTGAATGACATTGTGCTGGCCATTCTGGAGCTCTTGAAATATCATAAGCGTGTTTTGTATGTTGATATTGACATTCACCATGGTGATGGAGTTGAGGAGGCTTTCTACACAACGGATAGGGTTATGACAGTATCATTTCACAAATTTGGGGACTATTTCCCAGGGACAGGTGACATTAGAGACATCGGGTGCGGGAAAGGGAAATATTATGCTGTAAATGTCCCTTTAGATGATGGAATTGATGATGAAAGTTTTCAGTCTCTGTTTAAACCTATTATTCAACAAGTGATGTTGGTTTACAATCCTGAGGCAATTGTTCTCCAGTGTGGAGCTGATTCTTTGTCTGGAGACAGGCTAGGTTGCTTTAACCTTTCTGTGAAAGGGCATGCAGAGTGTGTTCGATACATGAGGTCATTCAATGTGCCACTTCTGATGGTCGGTGGTGGTGGGTACACAGTTCGTAATGTTGCTCGTTGTTGGTGCTACGAGACAGGGGTTGCTGTTGGTGTGGAGATTGATGACAAAATGCCTCAACATGAATACTACGAATATTTTGGACCAGATTACACTGTTCATGTGGCTCCAAGTAATATGGAAAATAAGAACACGAAGCAGTATCTGGATAAAATTAGGTCCAAAATACTTGAAAACATTAATTCATTGCCATGTGCACCAAGTGCTCAATTCCAAGTGCAGCCTCCAGATACTGATTTCCCTGAACTGGAAGAAGAAGATTATGATGAACGTATTAGAAGTCATAAATGGGATGGAGCAAGTTGTGATTCTGATTCAGAGAATGGCGATTTAAAGCATCGTAATCATGATGTTGAGGAAAGTGCATTCCCACGGCATAATCTGGCGAATAATAGTTACAACACCAAGATTAAGCTAGAAGGTGTTGGTACAGGTGGTCTTGACATGGCTGCTGGAACAGACACAAAAAAGAATGACGAGTCCTCTGAAGCCATGGACTATGAAAGTGGAGAAGAGTTACGACAGGATCATTTTGCTTCTCCAATAAATGCTTCTCAGCCATATGATCCCGCTCTTTTGACAGGAGCTCAAAATCAGTTGCAGTCAACAGATACTGTAAAGCCCATAGAACAAGGTGGCAATGCTCCAGGAATACCACCACCTTCAGTTGCAACTGTAAGCACCGGCACTCGCCCGAGTTCATTTAGCCGGACATCATCTTTGAATTCCATGTCTTCAGCAAAGCAGGGTTCCATTTTGGGACCAAATCCTCTTCAAGGGCTGAATGCATCTGGTCTACAATTTCCAGTTCCAACTTCTGATTCACCTATAAGGCAAGGTGGGTCTTATTCTATAACTGTACAGGCCCCAGATAAGCAAGGTTTGCAAAATCATATGAAGGGACCTCAAAATATGCCAGGGAATTCTTGA___AAATTATATATCCTTCTGCAATTTGAAACACAGGTTACTTTGTATAATGATAATGTAATGTCATCCCCTTGGTCACAATGTGCTTGTGATCAGTTTAGAAGCTAATTATACACTTAGAATGCTAATTGGTGATGTACTAAAACTTCTCTGTACTTTATTCTACTGTACTGTATTCGGAGATGCTGAAAATTTACTAAAACAAATGGAATATCAACAACCTAGGATCATTATGTCATATGACACCAGTTTAGAAGCTAATTATACACTTGGAATGCTAATTGGTGATGTGCCAAAATTTTCTGTACTTCATTCTACTGTACTGTATTTGAAGATGCTGAAAATTTACTAAAGCAAATGGAATATCAACAACCTAGGATCATTATATC

Fln Alignment:

Contig3506___MDYESGEELRQDHFASPINASQPYDPALLTGAQNQLQSTDTVKPIEQGGNAPGIPPPSVATVSTGTRPSSFSRTSSLNSMSSAKQGSILGPNPLQGLNASGLQFPVPTSDSPIRQGGSYSITVQAPDKQGLQNHMKGPQNMPGNS
D5A979______________MDYESGEELRQDHFASPINASQACDPHLSTGVQNQLQPTNTIKPIEQGDNTPGIPPPSIATVSTSTRPTSISRTSSLNSMSSARQGSISGPNPLQGPNASGLQFPVPTSNSPTRQGGPYSITVQAPDKQGLQNHIKGPQNTPGNS

SNPs (tot: 11)

Position	A %	C %	G %	T %	Probability
712	16			83	0.999991
713		16		83	0.999991
715	83			16	0.999991
716			83	16	0.999991
729	14			85	0.999981
1067	87		12		0.992554
1981	90			10	0.90298
2117	90		10		0.90298
2160		88		11	0.923564
2445	92		7		0.999664
2541	23		76		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain