SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3498

Length: 2445 nt

UniGene Fasta

>sp_v3.0_unigene3498
CTCCCCGGAAAAGGGAGACAAAATAATAAAAGAAATTGCAGCCAGAACCCGTGAAAAGAGCATGGAAATCCAGTAACATGGTTGGTAAAGCTGAGATTTTGTGGAAATGGGTAGATAGATAAGGGTTCTGCAGATGGGTTCGCACCCTCACCGCTAAAGGTTTTGACCCCACGACAGTACGCCGGTGAAAGCTAAATTTTTGTGTGCGTGTTTTGTTTCTGGGTCGAGGGGGAAGTCTGTCCAAGAATGGTTAATGAGCTGTAAGTATCTGGGCAAAACTCTTTTCCAAAACGACAAAATTCATGGAGAGTGGAGGAGAAGTGGAAGCGGTAGATCCATGTCCGTAGCCACTTTTTATATAAATTCTTTTTAATGTGGTGCGCTGTTGCAGAGAGGATGAGGGGCCATCATGTCCCATCGAGATAACAGGCGGGCCCTGTTTGAATCTGATGGTGTTGTGATATTGTGTGTCGTGGTTGGATTATTCATAGGTATCTCACATTTCTTTCAATGTAACAGCGATTGATTTAGAGCCAGGCAATGCTTGAAATCATTTGCTTGCGTGAGAGGCCGAGACCCAGACGAGCAGAAGAGGAAGGAGTGGGACAATATTAATACATGTTAGAAGAGGAAGGGGTCGAGGGTGTTAGCACTAACAGTTTTGTTTGAGCGGGGTCTTTGGTGTTTTTTCTTTAAGAAAGTTGATTATTATCCATGGCTATGGCTCTGCAAAAAAATGGAGGAACAAATGGGCTTTTCATCACTATCATTGTCATAATCAGTTTATGGGGGGAGGCCATGGCTGGGAGGCAGTCTACATTTACCTTGGATGAGGCCGAGGTTAATAGGCTCAGGCAGCAGGAGCAGCTGCATTTAGATATAGAGAACCATCTCAAGCGCCTCAATAAGCCTGCTGTTCAGAGCATTCAGAGCCCTGATGGAGATATCATTGACTGTGTGCACATTTCTCACCAGCCTGCCTTCGACCACCCAATTCTTCAAAATCATACCATTCAGATGAGGCCTAGTGCTCATCCAGATGGACTCTTCACAACTAGCAAGACTTCAACGCCTAATGGCCCTGCGCTGCCCCAGCTGTGGCACAAGAATGGGGGGTGTCCTTCACAGACTATACCCATTCGCAGAACTAATAAACAAGACATTTTGAGAGCAAGCAATATCGAGAGATTTGGGCGGAAGAAGCCATTATCTGCAAGGCCTCCGGGGCCTAAGTCTGCAGATCCTGATTTACTCAATGAAAGTGGGCATCAGCATGCCATAACTTTTGTTCAAGGAGACAAGTACTATGGAGCTAAAGCAACCATAAATGTCTGGGATCCTAAAATTCAGCTTTCAAACGAGTTCAGCTTGTCTCAGTTGTGGGTTCTGGCAGGTTCATTTGATGGGGATTTGAACAGTATTGAAGCAGGCTGGCAAGTGAGTCCAGATCTATATGGGGACAATAACACAAGGCTCTTCACATATTGGACTAGTGATGCTTATCAAGCTACTGGATGCTACAACTTGCTCTGCTCAGGATTCATACAAGTAAACAGTGATATTGCAATGGGCGCCACCATATATCCCGTGTCAAACTACGGGGGATCCCAATACGATATAAGCATCCTTGTTTGGAAGGATCCAAAAGAAGGGAACTGGTGGATGCAATTTGGAAATAACAATGTTTTAGGATACTGGCCAGCACCTCTATTTTCCTACTTAGCAGACAGTGCCAGCATGATTGAATGGGGTGGTGAAGTTGTTAACTCTGAGCCAGATGGGGAACACACCTCCACTCAGATGGGCAGTGGTCATTTCCCAGATGAAGGATTCGGAAAAGCTAGTTACTTCCGGAATATCCAGGTAGTTGATGGATCGAATAATCTGAGAGCTCCAAAAGGATTAGGTATCTACACCGAGGCATCCAAGTGCTATGATGTTCAGAAAGGCTACAACGCCGCTTGGGGTAACTTCTTCTATTTTGGAGGTCCTGGGAAAAACGAAGATTGCTCTTGAAAACATATCCGCAAGAGCAGGGCAGTGCCTGTGTACCATTGTAATTTTTCTATAATTGCCTCTCTGCTTGCAAGCTTGCAAGACAGTACTCCTACCTCTCATGAAATACAATATATTCTCTTCCTCAGAGATTGTAGATGCTCTGCCTCTGTGACAGTAGTCTTTTTTTTCTTCCCCTTGTCTCTTCTTGCATGATATTGTGGGCAAGTTCATCTGAAACAGAGAGCTGCCCTTTCCAACTGTATCAATGATATTTCTACGGGTTTCTGTAATCAGTGGTCTTCATAATCCAGTGCTCTGATTAGTTCAAGCTTTCCGAACTAATATTGTAAAGAGCTGTTAACATAAATTCAATTATTTGTATGGCTCTTTCTGTATGAGAATCTCAAATATATTTTTCATCCAAAGATTAAATTTTCGAGGTTTGCA

Ace file of the UniGene sp_v3.0_unigene3498

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Glucoamylase domain containing protein	-	-	0.0	62%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	60%
Sma3	Carboxyl-terminal proteinase	-	-	9.74e-16	-

Source	Gene names
Sma3	AT2G44210; AT5G50150; At1g10750; At1g23340; At1g23340/F26F24_11; At1g55360; At1g70550; At2g17750; At2g44210; At2g44220; At2g44220/F4I1.3; At2g44240; At2g44250; At3g13510; At3g48230; At3g48230/T24C20_110; At5g18460; At5g19170; At5g25950; At5g25960; At5g501

Source	GOs	Term	Type	Identity
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	binding	GO:0005488	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	response to oxidative stress	GO:0006979	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3		IPR001993	-	0.0	-
Sma3	Domain of unknown function DUF239	IPR004314	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G55360.1	Protein of Unknown Function (DUF239) chr1:20666526-20668502 REVERSE LENGTH=422	68%
RefSeq	Arabidopsis thaliana	NP_175933.1	uncharacterized protein [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002303990.1	predicted protein [Populus trichocarpa]	75%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A842

Fln msg: your sequence is longer than subject: 434 - 399

Fln protein: MAMALQKNGGTNGLFITIIVIISLWGEAMAGRQSTFTLDEAEVNRLRQQEQLHLDIENHLKRLNKPAVQSIQSPDGDIIDCVHISHQPAFDHPILQNHTIQMRPSAHPDGLFTTSKTSTPNGPALPQLWHKNGGCPSQTIPIRRTNKQDILRASNIERFGRKKPLSARPPGPKSADPDLLNESGHQHAITFVQGDKYYGAKATINVWDPKIQLSNEFSLSQLWVLAGSFDGDLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFIQVNSDIAMGATIYPVSNYGGSQYDISILVWKDPKEGNWWMQFGNNNVLGYWPAPLFSYLADSASMIEWGGEVVNSEPDGEHTSTQMGSGHFPDEGFGKASYFRNIQVVDGSNNLRAPKGLGIYTEASKCYDVQKGYNAAWGNFFYFGGPGKNEDCS*

Protein Length: 435

Fln nts: CTCCCCGGAAAAGGGAGACAAAATAATAAAAGAAATTGCAGCCAGAACCCGTGAAAAGAGCATGGAAATCCAGTAACATGGTTGGTAAAGCTGAGATTTTGTGGAAATGGGTAGATAGATAAGGGTTCTGCAGATGGGTTCGCACCCTCACCGCTAAAGGTTTTGACCCCACGACAGTACGCCGGTGAAAGCTAAATTTTTGTGTGCGTGTTTTGTTTCTGGGTCGAGGGGGAAGTCTGTCCAAGAATGGTTAATGAGCTGTAAGTATCTGGGCAAAACTCTTTTCCAAAACGACAAAATTCATGGAGAGTGGAGGAGAAGTGGAAGCGGTAGATCCATGTCCGTAGCCACTTTTTATATAAATTCTTTTTAATGTGGTGCGCTGTTGCAGAGAGGATGAGGGGCCATCATGTCCCATCGAGATAACAGGCGGGCCCTGTTTGAATCTGATGGTGTTGTGATATTGTGTGTCGTGGTTGGATTATTCATAGGTATCTCACATTTCTTTCAATGTAACAGCGATTGATTTAGAGCCAGGCAATGCTTGAAATCATTTGCTTGCGTGAGAGGCCGAGACCCAGACGAGCAGAAGAGGAAGGAGTGGGACAATATTAATACATGTTAGAAGAGGAAGGGGTCGAGGGTGTTAGCACTAACAGTTTTGTTTGAGCGGGGTCTTTGGTGTTTTTTCTTTAAGAAAGTTGATTATTATCC_-_ATGGCTATGGCTCTGCAAAAAAATGGAGGAACAAATGGGCTTTTCATCACTATCATTGTCATAATCAGTTTATGGGGGGAGGCCATGGCTGGGAGGCAGTCTACATTTACCTTGGATGAGGCCGAGGTTAATAGGCTCAGGCAGCAGGAGCAGCTGCATTTAGATATAGAGAACCATCTCAAGCGCCTCAATAAGCCTGCTGTTCAGAGCATTCAGAGCCCTGATGGAGATATCATTGACTGTGTGCACATTTCTCACCAGCCTGCCTTCGACCACCCAATTCTTCAAAATCATACCATTCAGATGAGGCCTAGTGCTCATCCAGATGGACTCTTCACAACTAGCAAGACTTCAACGCCTAATGGCCCTGCGCTGCCCCAGCTGTGGCACAAGAATGGGGGGTGTCCTTCACAGACTATACCCATTCGCAGAACTAATAAACAAGACATTTTGAGAGCAAGCAATATCGAGAGATTTGGGCGGAAGAAGCCATTATCTGCAAGGCCTCCGGGGCCTAAGTCTGCAGATCCTGATTTACTCAATGAAAGTGGGCATCAGCATGCCATAACTTTTGTTCAAGGAGACAAGTACTATGGAGCTAAAGCAACCATAAATGTCTGGGATCCTAAAATTCAGCTTTCAAACGAGTTCAGCTTGTCTCAGTTGTGGGTTCTGGCAGGTTCATTTGATGGGGATTTGAACAGTATTGAAGCAGGCTGGCAAGTGAGTCCAGATCTATATGGGGACAATAACACAAGGCTCTTCACATATTGGACTAGTGATGCTTATCAAGCTACTGGATGCTACAACTTGCTCTGCTCAGGATTCATACAAGTAAACAGTGATATTGCAATGGGCGCCACCATATATCCCGTGTCAAACTACGGGGGATCCCAATACGATATAAGCATCCTTGTTTGGAAGGATCCAAAAGAAGGGAACTGGTGGATGCAATTTGGAAATAACAATGTTTTAGGATACTGGCCAGCACCTCTATTTTCCTACTTAGCAGACAGTGCCAGCATGATTGAATGGGGTGGTGAAGTTGTTAACTCTGAGCCAGATGGGGAACACACCTCCACTCAGATGGGCAGTGGTCATTTCCCAGATGAAGGATTCGGAAAAGCTAGTTACTTCCGGAATATCCAGGTAGTTGATGGATCGAATAATCTGAGAGCTCCAAAAGGATTAGGTATCTACACCGAGGCATCCAAGTGCTATGATGTTCAGAAAGGCTACAACGCCGCTTGGGGTAACTTCTTCTATTTTGGAGGTCCTGGGAAAAACGAAGATTGCTCTTGA___AAACATATCCGCAAGAGCAGGGCAGTGCCTGTGTACCATTGTAATTTTTCTATAATTGCCTCTCTGCTTGCAAGCTTGCAAGACAGTACTCCTACCTCTCATGAAATACAATATATTCTCTTCCTCAGAGATTGTAGATGCTCTGCCTCTGTGACAGTAGTCTTTTTTTTCTTCCCCTTGTCTCTTCTTGCATGATATTGTGGGCAAGTTCATCTGAAACAGAGAGCTGCCCTTTCCAACTGTATCAATGATATTTCTACGGGTTTCTGTAATCAGTGGTCTTCATAATCCAGTGCTCTGATTAGTTCAAGCTTTCCGAACTAATATTGTAAAGAGCTGTTAACATAAATTCAATTATTTGTATGGCTCTTTCTGTATGAGAATCTCAAATATATTTTTCATCCAAAGATTAAATTTTCGAGGTTTGCA

Fln Alignment:

Contig3498___IENHLKRLNKPAVQSIQSPDGDIIDCVHISHQPAFDHPILQNHTIQMRPSAHPDGLFTTSKTSTPNGPALPQLWHKNGGCPSQTIPIRRTNKQDILRASNIERFGRKKPLSARPPGPKSADPDLLNESGHQHAITFVQGDKYYGAKATINVWDPKIQLSNEFSLSQLWVLAGSFDG-DLNSIEAGWQVSPDLYGDNNTRLFTYWTSDAYQATGCYNLLCSGFIQVNSDIAMGATIYPVSNYGGSQYDISILVWKDPKEGNWWMQFGNNNVLGYWPAPLFSYLADSASMIEWGGEVVNSEPDGEHTSTQMGSGHFPDEGFGKASYFRNIQVVDGSNNLRAPKGLGIYTEASKCYDVQKGYNAAWGNFFYFGGPGKNEDC
D5A842______________IHEHLRRINKPAVKSIQSSDGDIIDCIHRHKQPAFNHPLLKKHKIQDLPE-RPSKFRPAPVNRTSFSVHAAQTWHLAGFCPEGTIPVRRTFAEDLMRADSPKRYGRKSHRAAR----FDQKPDV-NGFGHEHAIAYVQGEEYYGAKATINVWAPRIETLNEFSLSQLWVLSGSFDGSDLNSIEAGWQVSPELYGDTRPRLFTYWTSDSYQETGCYNLLCSGFVQTNNKIAIGASISPVSEFADTQYDITILIWKDPKEGNWWMEFADRTLVGYWPSELFTHLADHANMIEWGGEIVNTEAGGEHTSTQMGSGHFAEEGFGKASYFRNLEIVDSDNSLRGVSSMLTLAEHTYCYNIQNRYNIEWSNHFYFGGPGSNPRC

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
490	25		75		0.996473
493			50	50	1.0
515	80		20		0.995493
516	80		20		0.995493
517		80	20		0.995493
546			14	85	0.993533
596	87		12		0.992554
649	11		88		0.923564
656	11			88	0.923564
1145	33		66		0.997452
2016	93		1		1.0
2061		2		93	0.999271

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain