SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3474

Length: 950 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene3474

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Sialyltransferase-like protein n=2 Tax=Picea RepID=Q4JEY7_PICGL	-	-	0.0	66%
FL-Next	tr=Sialyltransferase-like protein; Picea glauca (White spruce) (Pinus glauca).	-	-	0.0	66%
Sma3	Sialyltransferase-like protein	-	-	2.003e-21	-

Source	Gene names
Sma3	At1g08280; GSVIVT00037379001; LOC_Os12g05550; OSIGBa0145C12.8; OSIGBa0157A06.1; OSJNBa0043L24.2; OSJNBb0002J11.10; Os01g0858900; Os04g0506800; Os12g0151500; OsI_04506; OsI_16563; OsI_37484; OsJ_04139; OsJ_15390; OsJ_35239; P0489B03.1; P0683F02.29; PHYPADR

Source	GOs	Term	Type	Identity
Sma3	integral to Golgi membrane	GO:0030173	Cellular Component	-
Sma3	sialyltransferase activity	GO:0008373	Molecular Function	-
Sma3	protein glycosylation	GO:0006486	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glycosyl transferase, family 29	IPR001675	-	-
Sma3	Immunoglobulin/major histocompatibility complex, conserved site	IPR003006	-	-
Sma3	Sialyltransferase	IPR012163	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G08280.1	Glycosyltransferase family 29 (sialyltransferase) family protein chr1:2608408-2609604 FORWARD LENGTH=398	57%
RefSeq	Arabidopsis thaliana	NP_172305.1	glycosyl transferase-like 29 protein [Arabidopsis thaliana]	57%
RefSeq	Populus trichocarpa	XP_002306228.1	predicted protein [Populus trichocarpa]	60%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: Q4JEY7

Fln msg: your sequence is shorter than subject: 305 - 421

Fln protein: SYAAIELGEAEQRQLISGLLNYSVGSDAHSIKFHQVLGAWVQNKRFDPRVMTELGDLVKTPLDRHYNDTRSLEIRPGQAYRSCAVVGNSGILLQKTQGQLIDSHEMVIRLNSAHTRGFEKKVGSKTTLAFINSNILHGCARRVGCFCHSYGEGVPIMIYICQPAQFMDFVRCNASHKAPLLVTDARFDNLCSRLVKYYSLKTFVETTGKHPDKWSEAHEGPMFHYSSGMQAVMVALGICEKVSLFGFGKSAEAKHHYHTNQRSELTLHDYEAEYRLYRDLADRSPDIPFLSDAGIELPPVEIYL*

Protein Length: 306

Fln nts: ATCCTACGCCGCGATCGAGTTAGGCGAGGCGGAGCAGCGCCAGCTGATCAGCGGTCTGCTGAACTATAGCGTGGGCAGCGACGCGCACTCGATCAAATTTCACCAGGTGTTAGGGGCTTGGGTTCAGAACAAGCGATTCGACCCACGGGTCATGACGGAGCTGGGCGATCTGGTGAAAACACCCTTGGATCGCCACTACAACGATACTAGGTCTCTGGAGATCCGACCCGGACAAGCCTACCGGAGCTGCGCCGTGGTGGGTAACAGCGGCATCCTTCTGCAGAAAACCCAGGGACAGCTGATCGATTCCCACGAGATGGTAATTCGGCTCAACAGCGCCCACACCAGGGGTTTCGAAAAGAAAGTGGGCTCGAAAACCACTCTGGCGTTCATCAACAGCAATATTCTGCATGGCTGCGCCAGGAGAGTTGGGTGTTTCTGCCATTCATACGGGGAAGGCGTTCCAATTATGATATACATCTGCCAGCCCGCCCAATTCATGGATTTCGTTCGCTGCAACGCGTCCCACAAGGCCCCCTTGCTCGTTACCGATGCCCGATTCGACAATCTGTGCAGCAGATTAGTGAAGTATTATTCCCTCAAGACTTTTGTGGAGACCACCGGCAAACATCCGGACAAATGGAGCGAGGCGCACGAAGGCCCCATGTTCCATTACTCCTCTGGAATGCAGGCGGTGATGGTTGCATTGGGGATTTGCGAGAAGGTGAGTCTCTTCGGCTTCGGTAAGTCTGCGGAGGCAAAGCACCATTACCATACAAATCAGAGGAGCGAGCTCACGCTTCATGATTATGAAGCCGAGTATCGACTGTATCGTGATTTGGCTGATAGGTCACCCGATATACCTTTCCTAAGCGATGCCGGCATCGAGCTTCCACCGGTGGAAATCTATTTATGA___GTTTCCTTCTTTCTCTGTGATTAGATTCGTTTTC

Fln Alignment:

Contig3474___YAAIELGEAEQRQLISGLLNYSVGSDAHSI------------------------------------------------KFHQVLGAWVQNKRFDPRVMTELGDLVKTPLDRHYNDTRSLEIRPGQAYRSCAVVGNSGILLQKTQGQLIDSHEMVIRLNSAHTRGFEKKVGSKTTLAFINSNILHGCARRVGCFCHSYGEGVPIMIYICQPAQFMDFVRCNASHKAPLLVTDARFDNLCSRLVKYYSLKTFVETTGKHPDKWSEAHEGPMFHYSSGMQAVMVALGICEKVSLFGFGKSAEAKHHYHTNQRSELTLHDYEAEYRLYRDLADRSPDIPFLSDAGIELPPVEIYL
Q4JEY7______________YAEIELGDPEERQRINRLLDGSIGSGSRSISSWRRAIEHDDLLQLPRPRGAASQRERQRQRHGIPFHLFHPRYTPYWTEFRRVLKYWVQNKRFHPRVMAELGDLVKTPLDRHYNATRTVNIRPGQPYRSCAVVGNSGILLQKTQGPLIDSHEMVIRLNNARIGGFQNNVGSKTTLAFVNSNILHSCARRAGCFCHPYGETVPIMMYICQAVHFMDFALCNASHKVPLLVTDARFDNLCGRVVKYYSLKNFVETTGKHPEQWSAAHDGSMFHYSSGMQAVMLALGICEKVSLFGFGKSPQAKHHYHTNQKGELTLHDYEAEYQFYKDLANGSLDIPFLSEVGIDLPPLQIYL

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
606		66		33	0.997452
625		66	33		0.997452
679		66	33		0.997452
779	33			66	0.997452
817		33		66	0.997452

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain