SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3457

Length: 2370 nt

UniGene Fasta

>sp_v3.0_unigene3457
GAAATATGATTTTGCAGATCTATTTCAGAAATACTTTTCTAAAAATAAATTTTGATTTGAAAAAAAAGCAGAGGAAAAAGCATCTGCCTGCGGAAGTTAAATTCTATAATCTCTGAGAAAATAACCCCTCTTATCATCAAGGCGTAAGGCTTCTTTCAATGGCGGCGTCCTCTTCTCTGGTAAACATACGTGGATGGTCATATGGATCATCACCATCCACATTCTTGACCGGCGAGTCGAGGGTGTTCGTTAAGTCTGTGTCAGGCCTCCAGCCTCTGCCATGTCGCCTTCATAGCACGAGGTGCACGTTGGCCAATCCTGTTGATTCTCCTAATGGCAGAGCATTCACCCATGTACTTCAGAGTCGGGGTTTGACTGGGTTGCTTGGTTCTAGTTATCCACAAGAAATGGTTCAAAGAGACTTGGGGCATGATACAAGACTACGGATTTTTTCAGGCTCAGCAAATCCTTCTCTTGCACAGGAAATTGCATGTTACTTGGGCCGGGATCTTGGTAAAATTAGAATTAAAAGGTTTGCTGATGGTGAGATATATGTTCAACTCCAAGAAAGTGTGAGAGGTTGTGACGTGTTCCTGGTGCAACCAACATGCCCACCTGCAAATGAGAATTTGATGGAGCTTCTTATAATGATTGATGCTTGCCGTAGAGCATCTGCCAAAAATATTACAGCTGTTATTCCATACTTTGGATATGCTAGAGCAGACAGAAAGACACATGGACGTGAATCTATTGCAGCAAAACTTGTTGCAAACTTAATAACAGAAGCAGGTGCAAACCGAGTTCTTGCATGTGATCTTCACTCTGGACAGTCCATGGGGTATTTTGATATACCTGTGGATCATGTCTATGGTCAGCCTGTAATTCTAGATTACCTGGCCAGCAAGGTGATTGCATCGAACGATTTGGTGGTTGTATCACCTGATGTTGGTGGTGTTGCCCGTGCTCGTGCTTTTGCTAAAAAACTATCTGATGCTCCTCTGGCTATTGTAGATAAAAGGCGTCAAGGCCACAATGTTTCTGAGGTTATGAATTTGATTGGTGATGTGAAAGGGAAAGTTGCTGTCATGGTTGATGACATGATTGATACTGCTGGGACAATTACAAATGGAGCTGCATTGTTACATGAAGAGGGTGCCAGAGAAGTCTATGCATGCTGCACACATGCTGTTTTTAGTCCTCCTGCAATTGAAAGGCTGTCTGGAGGTCTTTTCCAGGAGGTTATTATTACAAACACAGTACCGGTTAAAGAGGAGAACTACTTTCCTCAATTGACAATTTTGTCTGTTGCAAACCTTCTCGGTGAAACTATTTGGCGTGTCCACGATGACTGTTCTGTGAGTAGCATTTTCCAGTGATGTAATGGTGCTATTATTTAGTGTTCCTAAATTTGCACAAGCAAAGTTGAATATGCAATTCCAGTCCAGCATATGCTGTAAAATTTTGTAGGTTCATGAAGTTCAGAATTTCATTTTGGGATGACATTTGATTGTTCAATTATCCTGGTCTTGGATCTACACTCTAGAACATGTAGTTCCAATATGACTTGCTTTAGAGTTTCTTTTGCTAAGCTGTTTTTCATCTATGGCTTCATTACTTGTATGGTGTTGCTCTTTTAATTAGATTAGGGTGGCACACTGTCACTGAGTGTAGAACTACTGTTCCATGTACTTGTTGTCAGGGTGGCTTTGAACCTCATTCGGGCCTCGGTATTGAGTGAGGTCATTGGGTGGTGGAAATTTACTTGGGATTTTCTTGATCCCTATCTCCACATCGGGAAGGATGCTCCTCAGATGAGCTACTTGCAATTTTTTTCATTGAGAATAGGCTGATTGTTATAACATATGTTCTAGGTTTTGGAGTTGACAGGGCATAAGTGCCCATACATATTGTCTCTTAAAGCTCTGGAGTCTGAGATATCACTACTTCTGGGCTATGTCGATTGAAGAATGTAAATGAAGGTATACATCAGTGGTTCAAAGTTTTCCTCCTGGTGGATTCCTAAAGTTTTCTGAAGTTGACACAAGTATTATAATTTTTACTGACGACTAGAATTGTATTGAGGTGCAGCCTTAGTTCGAATGTCTAAACAAAGAAAGATAATCATTATTAGATTTATATTAGTCTGTTGGTTACCTGTTTTCAATGTTGAACTGAATACTGTGTTTACCAGCTTTCGCAAATATTGGATTGGACAGTTGGGCTGGAAAGTTATCTTTCCTGTCAATTGCTTGGTCTCTGCTTTGTATATTGTTCAATTGTCCTAGAACGAATTAATCTGATCTTGCGAGAGACTGTCTTGGCAGACAGTAGAAAAATGAACATGATAATACCTTTATTGACTTAACTTAG

Ace file of the UniGene sp_v3.0_unigene3457

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ribose-phosphate pyrophosphokinase n=1 Tax=Populus trichocarpa RepID=B9IB48_POPTR	-	-	0.0	83%
FL-Next	sp=Ribose-phosphate pyrophosphokinase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Sma3	Ribose-phosphate pyrophosphokinase	-	-	9.80909e-45	-

Source	ECs	Term	Type	e value	Identity
Sma3	Ribose-phosphate diphosphokinase.	EC:2.7.6.1	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Pentose phosphate pathway	00030	%
Sma3	Purine metabolism	00230	%
Sma3	Biosynthesis of alkaloids derived from histidine and purine	01065	%
Sma3	Biosynthesis of plant hormones	01070	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	At1g32380; At2g35390; At2g44530; CHLREDRAFT_137493; F16B22.2; F5D14.15; GSVIVT00015830001; GSVIVT00018977001; LOC_Os02g03540; LOC_Os06g41360; MICPUCDRAFT_13173; MICPUN_83316; OSJNBa0004O05.29; Os02g0127700; Os06g0617800; OsI_05689; OsI_07414; OsI_09602; O

Source	GOs	Term	Type	Identity
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	ribose phosphate diphosphokinase activity	GO:0004749	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	nucleoside metabolic process	GO:0009116	Biological Process	-
Sma3	ribonucleoside monophosphate biosynthetic process	GO:0009156	Biological Process	-
Sma3	nucleotide biosynthetic process	GO:0009165	Biological Process	-
Sma3	cellular biosynthetic process	GO:0044249	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Phosphoribosyltransferase	IPR000836	-	-
Sma3	Phosphoribosyl pyrophosphate synthetase, conserved site	IPR000842	-	-
Sma3	Ribose-phosphate diphosphokinase	IPR005946	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G35390.2	Phosphoribosyltransferase family protein chr2:14895528-14897581 REVERSE LENGTH=403	80%
RefSeq	Arabidopsis thaliana	NP_850244.1	ribose-phosphate pyrophosphokinase 1 [Arabidopsis thaliana]	80%
RefSeq	Populus trichocarpa	XP_002320580.1	predicted protein [Populus trichocarpa]	83%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PTR8

Fln msg: your sequence is longer than subject: 406 - 247

Fln protein: MAASSSLVNIRGWSYGSSPSTFLTGESRVFVKSVSGLQPLPCRLHSTRCTLANPVDSPNGRAFTHVLQSRGLTGLLGSSYPQEMVQRDLGHDTRLRIFSGSANPSLAQEIACYLGRDLGKIRIKRFADGEIYVQLQESVRGCDVFLVQPTCPPANENLMELLIMIDACRRASAKNITAVIPYFGYARADRKTHGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKVIASNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVSEVMNLIGDVKGKVAVMVDDMIDTAGTITNGAALLHEEGAREVYACCTHAVFSPPAIERLSGGLFQEVIITNTVPVKEENYFPQLTILSVANLLGETIWRVHDDCSVSSIFQ*

Protein Length: 407

Fln nts: GAAATATGATTTTGCAGATCTATTTCAGAAATACTTTTCTAAAAATAAATTTTGATTTGAAAAAAAAGCAGAGGAAAAAGCATCTGCCTGCGGAAGTTAAATTCTATAATCTCTGAGAAAATAACCCCTCTTATCATCAAGGCGTAAGGCTTCTTTCA_-_ATGGCGGCGTCCTCTTCTCTGGTAAACATACGTGGATGGTCATATGGATCATCACCATCCACATTCTTGACCGGCGAGTCGAGGGTGTTCGTTAAGTCTGTGTCAGGCCTCCAGCCTCTGCCATGTCGCCTTCATAGCACGAGGTGCACGTTGGCCAATCCTGTTGATTCTCCTAATGGCAGAGCATTCACCCATGTACTTCAGAGTCGGGGTTTGACTGGGTTGCTTGGTTCTAGTTATCCACAAGAAATGGTTCAAAGAGACTTGGGGCATGATACAAGACTACGGATTTTTTCAGGCTCAGCAAATCCTTCTCTTGCACAGGAAATTGCATGTTACTTGGGCCGGGATCTTGGTAAAATTAGAATTAAAAGGTTTGCTGATGGTGAGATATATGTTCAACTCCAAGAAAGTGTGAGAGGTTGTGACGTGTTCCTGGTGCAACCAACATGCCCACCTGCAAATGAGAATTTGATGGAGCTTCTTATAATGATTGATGCTTGCCGTAGAGCATCTGCCAAAAATATTACAGCTGTTATTCCATACTTTGGATATGCTAGAGCAGACAGAAAGACACATGGACGTGAATCTATTGCAGCAAAACTTGTTGCAAACTTAATAACAGAAGCAGGTGCAAACCGAGTTCTTGCATGTGATCTTCACTCTGGACAGTCCATGGGGTATTTTGATATACCTGTGGATCATGTCTATGGTCAGCCTGTAATTCTAGATTACCTGGCCAGCAAGGTGATTGCATCGAACGATTTGGTGGTTGTATCACCTGATGTTGGTGGTGTTGCCCGTGCTCGTGCTTTTGCTAAAAAACTATCTGATGCTCCTCTGGCTATTGTAGATAAAAGGCGTCAAGGCCACAATGTTTCTGAGGTTATGAATTTGATTGGTGATGTGAAAGGGAAAGTTGCTGTCATGGTTGATGACATGATTGATACTGCTGGGACAATTACAAATGGAGCTGCATTGTTACATGAAGAGGGTGCCAGAGAAGTCTATGCATGCTGCACACATGCTGTTTTTAGTCCTCCTGCAATTGAAAGGCTGTCTGGAGGTCTTTTCCAGGAGGTTATTATTACAAACACAGTACCGGTTAAAGAGGAGAACTACTTTCCTCAATTGACAATTTTGTCTGTTGCAAACCTTCTCGGTGAAACTATTTGGCGTGTCCACGATGACTGTTCTGTGAGTAGCATTTTCCAGTGA___TGTAATGGTGCTATTATTTAGTGTTCCTAAATTTGCACAAGCAAAGTTGAATATGCAATTCCAGTCCAGCATATGCTGTAAAATTTTGTAGGTTCATGAAGTTCAGAATTTCATTTTGGGATGACATTTGATTGTTCAATTATCCTGGTCTTGGATCTACACTCTAGAACATGTAGTTCCAATATGACTTGCTTTAGAGTTTCTTTTGCTAAGCTGTTTTTCATCTATGGCTTCATTACTTGTATGGTGTTGCTCTTTTAATTAGATTAGGGTGGCACACTGTCACTGAGTGTAGAACTACTGTTCCATGTACTTGTTGTCAGGGTGGCTTTGAACCTCATTCGGGCCTCGGTATTGAGTGAGGTCATTGGGTGGTGGAAATTTACTTGGGATTTTCTTGATCCCTATCTCCACATCGGGAAGGATGCTCCTCAGATGAGCTACTTGCAATTTTTTTCATTGAGAATAGGCTGATTGTTATAACATATGTTCTAGGTTTTGGAGTTGACAGGGCATAAGTGCCCATACATATTGTCTCTTAAAGCTCTGGAGTCTGAGATATCACTACTTCTGGGCTATGTCGATTGAAGAATGTAAATGAAGGTATACATCAGTGGTTCAAAGTTTTCCTCCTGGTGGATTCCTAAAGTTTTCTGAAGTTGACACAAGTATTATAATTTTTACTGACGACTAGAATTGTATTGAGGTGCAGCCTTAGTTCGAATGTCTAAACAAAGAAAGATAATCATTATTAGATTTATATTAGTCTGTTGGTTACCTGTTTTCAATGTTGAACTGAATACTGTGTTTACCAGCTTTCGCAAATATTGGATTGGACAGTTGGGCTGGAAAGTTATCTTTCCTGTCAATTGCTTGGTCTCTGCTTTGTATATTGTTCAATTGTCCTAGAACGAATTAATCTGATCTTGCGAGAGACTGTCTTGGCAGACAGTAGAAAAATGAACATGATAATACCTTTATTGACTTAACTTAG

Fln Alignment:

Contig3457___MELLIMIDACRRASAKNITAVIPYFGYARADRKTHGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDYLASKVIASNDLVVVSPDVGGVARARAFAKKLSDAPLAIVDKRRQGHNVSEVMNLIGDVKGKVAVMVDDMIDTAGTITNGAALLHEEGAREVYACCTHAVFSPPAIERLSGGLFQEVIITNTVPVKEENYFPQLTILSVANLLGETIWRVHDDCSVSSIF
C0PTR8______________MELLVMVDACRRASARNITAVIPYFGYARADRKTLGRESIAAKLVANLITEAGANRVLACDLHSGQSMGYFDIPVDHVYGQPVILDHLSSKIISSRDLVVVSPDVGGVARARVFAKKLSDSPLAIVDKRRQGHNTSEVRNLIGDVNGKVAVMVDDMIDTAGTIANGAALLHEKGAREVYACSTHAVFSPPAIERLSGGLFQEVIVTNTIPLKDKNYFPQLTILSVANLLGETIWRVYDDVSVSSIF

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
639		80		20	0.995493
1040	25			75	0.996473
1069			83	16	0.994512
1634	10			90	0.90298
1635		10		90	0.90298
1637		10		90	0.90298
1913	11			88	0.923564
1915	11			88	0.923564
1916		88		11	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain