SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3453

Length: 1241 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene3453

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Gamma tonoplast intrinsic protein n=1 Tax=Pyrus communis RepID=Q9FXM0_PYRCO	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	transport	GO:0006810	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Aquaporin	IPR012269	-	0.0	-
Sma3	Major intrinsic protein	IPR000425	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G36830.1	" GAMMA-TIP, TIP1;1, GAMMA-TIP1 gamma tonoplast intrinsic protein chr2:15445490-15446336 FORWARD LENGTH=251"	68%
RefSeq	Arabidopsis thaliana	NP_181221.1	aquaporin TIP1-1 [Arabidopsis thaliana]	68%
RefSeq	Populus trichocarpa	XP_002326382.1	aquaporin, MIP family, TIP subfamily [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NP49

Fln msg:

Fln protein: MPYPFQRVAAGRPEEAYHPSTLRAVLAEFISAIIFVFAGEGSVIAFSKLTDDASTTPAGLVAEALAHGIALFIAVAVASNISGGHVNPAVTFGLLVGGHITLLRGVLYWIAQMLGATVACALLKYTTNGMSIGVFSLSSGVGVGNALVFEIVMTFGLVYTVYATAVDPNKGTLGTIAPICIGFIVGANILAGGAFDGACMNPARAFGPALVSWTWKNHWIFWVGPLIGGGLAGAVFEVFFIEAEPTHERLPVSDD*

Protein Length: 257

Fln nts: GATACCACTGCTTAAGCAGTGGTATCAACGCAGTCAAGACACGGGGACCGCAGAGTTGCAGAAGAAAACCATTTGTGTTCCTTATCTGGAAAATTCAAGGCGGGCATC_-_ATGCCGTACCCCTTCCAAAGAGTCGCAGCGGGGAGGCCTGAGGAGGCCTACCACCCGAGCACTCTCAGAGCTGTGCTCGCGGAGTTCATCTCGGCTATCATCTTCGTCTTCGCCGGCGAAGGATCCGTCATTGCTTTCTCCAAGCTGACAGACGACGCTTCGACAACGCCGGCGGGGCTGGTGGCGGAGGCGCTGGCGCATGGGATAGCGCTTTTTATAGCCGTGGCGGTGGCGTCCAATATCTCGGGAGGACATGTTAACCCGGCTGTGACCTTCGGGCTACTCGTTGGCGGCCACATCACACTTCTAAGGGGCGTTTTATACTGGATTGCCCAGATGCTCGGCGCCACGGTTGCCTGCGCGCTCCTCAAGTATACCACCAACGGCATGAGCATCGGGGTGTTCTCGTTGTCTTCCGGCGTGGGTGTGGGCAACGCTCTGGTGTTCGAGATCGTGATGACATTCGGCCTCGTCTACACGGTCTACGCCACGGCAGTTGACCCCAACAAGGGCACCCTGGGCACCATTGCCCCGATCTGCATTGGATTCATCGTGGGCGCCAACATTTTGGCCGGCGGGGCCTTCGACGGAGCGTGCATGAATCCGGCGAGGGCCTTCGGGCCGGCGCTGGTGAGCTGGACATGGAAAAACCACTGGATCTTCTGGGTCGGACCCCTCATTGGCGGTGGCCTCGCAGGGGCGGTGTTCGAAGTGTTTTTCATCGAGGCGGAGCCCACCCATGAACGGCTGCCGGTGTCGGACGACTGA___CGGAATTTAGAGTCGGAGATTTTTGTGTAAAGTGTGTGCCGGCATCGCATTTAACATTTTTATTTACATTTTTCATCATTTGTCTGAGGTGAAATAAATTTCTACATGTTTGTAATGCCGCCGTTGTGTTGCGTTCCCTGAAAAGGCCTGGACGGTCTGGAATTATTGAAAATTTGGGTTTTTCATTGCATACAGTTTCCAGAATCATCCACCAAATTCTATGTTCTGTTCAACACTTTTGGAAGATTCGCTAAATGTCGTGTTGCTCTTTTAAATTTTAGACAATTCGCCCAATTGTTTGAATGTCCTAAATGTAATGCTGTTATTTTAGCTTTTAAACAAGTTGCCAGAGTTTGAGATAAATT

Fln Alignment:

Contig3453___MPYPFQRVAAGRPEEAYHPSTLRAVLAEFISAIIFVFAGEGSVIAFSKLTDDASTTPAGLVAEALAHGIALFIAVAVASNISGGHVNPAVTFGLLVGGHITLLRGVLYWIAQMLGATVACALLKYTTNGMXXXXXXXXXXXXXXNALVFEIVMTFGLVYTVYATAVDPNKGTLGTIAPICIGFIVGANILAGGAFDGACMNPARAFGPALVSWTWKNHWIFWVGPLIGGGLAGAVFEVFFIEAEPTHERLPVSD
A9NP49______________MPYPFQRVAVGRADEAYHPDTLRAALAEFISAIIFVFAGEGSVIAFSKLSDDGSTTPAGLVAEALAHGIALFIAVAVASNISGGHVNPAVTFGALVGGHITLVRGIFYWIAQMLGATVACGLLKYTTNGMSIGVFSLSSGVGLGNALVFEIVMTFGLVYTVYATAIDPNRGTLGTIAPICIGFIVGANILAGGAFDGACMNPARAFGPALVSWTWKNHWIFWVGPLIGGGLAGAIFEVFFIEARPTHERLPTSE

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
640	3	96			0.980996
642	3	96			0.980996
643		96		3	0.980996
1045	2			97	0.975753
1046		2	97		0.97849
1048	96			3	0.987242
1049	96			3	0.988113
1066	5		94		0.998397
1236	25		75		0.996473
1238	33			66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain