SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3444

Length: 3832 nt

UniGene Fasta

>sp_v3.0_unigene3444
AGGGAAGGGGGCCGAGAAAGGGGAAGAAACAAAGGAGGCGGAGCTGTGTCGGGCCCCAAACGCCAACAAAATGGTAACAATGACCAGGAGGAGTTGACCAAATGAGCATATCTCGGGTTAAGGGAGCTAAGACTGTGTTGCACTCGTCACTTTCATGGTGTAGTTTGTCGTTCCGAGACTAACAAGTTTAATACAGGAAATGCATGGGGGATCAAGTCCTTTGATTTGGCTGAGGGATTGCGGTGTTCTATGCTCGTGGTGTTCTTTGTTCATTACCAATCTTCAGCCCAATTATGTGCCACTCCAGCCTTGCAGCAACTAGAATTAGAGGGTCAGAGTGAGGGTGTCAGCAGACACACAGGTGGCAAATACTTATCTATCACATAAACAGCAGAAGCATGGGCTCTGGTAGGTCCAAAGATGTCTCAGCAATCCCCTGCCAGTATGGATCAACTCCCACTACAAACTCATGTTGCACAGCAAATTCGGCGGGATAAACTTAGAATTCAAGGGTTCCAGCACCCATCATCGCCCAAAAGCCACATTAATAGTGGGCATTCAAAACTAGGCAATTCCTGCCTATGAGGAATGCTCTGCAGGATACTTGCAAGGATATCCAGGACATATTGATCAAGATAATATAAAAAATGTATTTCCTGGCCACAACATTCACATGATATCTTCTAATAACTATAACCTTCCTGCTGCTTCTGACTCTAGGGTTTTACCACCACAAAATACTGGCCATTTTCATACACAATCGCCACAACGAAATCCTCTTGTTGGAACCATACATTCTGTACAATCTCTGACACCTAATTTCGATGGTCATGTGAATGCATCAAAATCAGGAAGCTGGGGTTCTGGAGGCCCTCAGTTTGGGATGATGAATAATAATGCTTTCCTGAATTTGCCATCATTAACTGTCAATAGTAATGCAATGACAGCAGATTTATTTGCTGCTTCAAGCATACAGACAAGTTCGTTTGGATCAAACGGCAGAGAGGGAAGCATGGCTACATATTTTCCAGGTTCAAGTATCCAAGCTGACACCATGCAGACACCTTATCTAAGGAACCGGGGTATTGTAGGTTATACCGATTCATTGGCTTCTGGGAACATGGTACTTGTTAACAATACAACAGGAAGTTCATTAGCAACTCATAATTTTGCTGGCAATGGGCAACAGCAACAGCATTTCATTGGAATCACAGTTCCAACTGCTTCTCCTTCCCAACACTCCTCTGCTGGGGCTATAGAAAATTCTCCTACAGAACAACAAAGTGCCACTTCAAGTCTACTCACATCACGCCTTGAGGCCCATGCTTATGATTCTTGGCAAGCTGGAGGAAATGAGCTAACATTCCTGCAGACAACAGATGCAGCATCTAGTAATCAATCCCTTTGTGGACAATTGAACAATTCTGTTAGTCTGGGGAGTCTTCCAGTTGCTGAGAGATCTCAGGTTAGAATGAGGCCCCCATCTATGTCCTCTATTGAAGAAGAACAATCAGGAATTCTTCCCAGTGGATTACGTTTGCAATTAGATCCACCAACAACTGCCACTGGACAGAGACAGGGGCTTTCTCTGTGTCTTTTTCCAAAACATGCATCAACTGTTCAATTGCCACCCTTTCAAAATCACTCCACTGAGTTGGATATAAATTGCCCAGGCATTGCTCAAACGGCTTCAGAAGACAACTCATTTAGAATTGACAGGGATCCTAGAGATGGGATGATGGGAGGTGGGTTTTCAAATTCTCTTCAGAGTCCTGGAGTTAGCAAACAAATACATTCCAGTTACAGAGGAGTAACTGGGTTCCCTAATGTTCTGAGAGGCTCCAAATTTCTCAAAGCAGCACAGGAGTTGCTTGATGAAGTCGTGAATCTTAGCAAGTTCGGAAAGTGTGAGCCAGCCAAACACCATAAATCACAAACATTATTTGGTACTGCTGCTGACAAATGGGATACTGCCAAAGAAACTAACATAAAGAATGGTTTAACAGATACAAGTGCAGGATTTTTAAATTTAGCTGAAGAAACAAATATCTCCCATAATACTGAGATCAGTATGGCAGAAAGACGAGAGCTTCAAATAAAGAAGGCAAAACTTGTGGCTATGCTTGATGAGGTGGATCAAAAATACAAACAATACTACCAACAAATGCAAATTGTAGTTTCATCATTTGAAACTGTGACTGGGTTTGGGACTGCAAAGACATACACTTCCCTTGCTCTTGGAACTATCTCTAGGCACTTTCGATGCTTGAGAGATGCAATTGTGGGTCAAATTTGTGTGTCCAGCAAAAGTTTGGGTGAGGAAGATATGGCAGGAAATGGTAAAGGTGAAACATCTCGTCTCCGATTTGTAGATCAACAACTGAGGCAGCAGCGAGCTCTTCAACAACTAGGAATGATTCAACAACCTGCCTGGAGGCCACAGAGAGGTTTGCCAGAGCGAGCAGTTTCTGTCCTACGAGCTTGGTTATTTGAGCATTTCCTTCATCCGTATCCCAAAGATGCTGACAAACATATGCTAGCAAGGCAGGCAGGTTTGACAAGAAGCCAGGTCTCAAATTGGTTCATAAATGCACGTGTCCGTCTCTGGAAGCCCATGGTAGAAGAAATATATATGGAAGAAATCAAGGAAGCTGAGTTAGGACATTCATCAGCTGAAAAGGACTACAAGAAAAGTGGTGATAGCAAGGCAGATACAAAGTCAGAGGAAGGATCTGAAAGTAGTCAGAACAGTGAAGATCAGAAGCATACCAAGACAACGCAACTTGAAACTGATGCAGAGGATGTTGTCTGTGAGCAACAAAACATTTCAGTAAGCAGTGGTTTGAAGTCGGAGCATTCTCCTGATATGAGATATGGCAGAAGTCAAGCATTCAGCATAGAAGGGGTATCAAATGATGAGGTGTTTCATGATGTACGGGATGAGGGTGTGACACCAGGGAAGTTTAAGAAGGCTAGAAGTGGAATTGAAGGTTCTACATATCAATTTTCTCCAAATATGAGTTCAATTGTAGGTTTCAAAATGGAGGGAAGCTGCCAAAACGACAAATTTAATGATGAAAGACACAGTAGTGAGAATTACATTCTTGTTCACAGTGGCATGGCACTTGCAGATAGTGGTGGAAGTGGCTGTTTGAACAGATACGATGGACAAGAGGCATTTACCCCCAAGTTTTCTGGAAGTGGTGGGGTATCACTCACTTTGGGACTTCAACACTCTGATGGTTTATCATTATCTGGAACTCAACAAAGATGCATTTCCAGCGAAGGAAGGAATCACGGGCTTGGAAATGTCTCTCATGATTATTGTAATATTAGTGAGACTGCAGCTGCTCATGCTGCAAACGCTTATGAGAGCATCAACTTAGAAAACAGAAAGCGCTTCGCTACTCATTTATTGCAAACTTTGTAGCTTAGGTCAATGGAGATATGCTGTATACTATGTCCTTTGTGTGACTTTTCTGTCTAGCATAGCTTTTCTGTTAATTCTTTTCCATCCCTACAGTGGCATAGCCCTGTAATGGGGCTATTTTCCACATTGATACTCTTCTGTGATCATGTATCCTTGAATGGGTTTGGACCAATCTATTTGTCATAAACCTAATATTTAAGGATTTCTTGATTTTGGTGTTGTAATTATTACGAGGCTTCTTCCTTCAAATGCACTTGGAGGAAAGAAGCATAAGCCATTTGTAAAATTCGTATTAAACAGAAAAATCAGATTTCTTAACGCACTCATTGTAAGCTCACTTAATATGTGATTCATATTGACGTTTCTAGAAATCATATAATCGTTATTGTTGATTCCTCTACC

Ace file of the UniGene sp_v3.0_unigene3444

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Bel1 homeotic protein, putative n=1 Tax=Ricinus communis RepID=B9SDI4_RICCO	-	-	0.0	39%
FL-Next	tr=Homeobox transcription factor KN4; Picea mariana (Black spruce) (Abies mariana).	-	-	0.0	47%
Sma3	Associated with HOX family protein, expressed	-	-	6.029e-15	-

Source	Gene names
Sma3	AP22.90; At1g19700; At1g75410; At2g16400; At2g23760; At2g35940; At4g34610; At4g36870; At5g41410; BEL1; BELL1; BIHD1; BIP; BL1; BL2; BL3; BLH1; BLH10; BLH2; BLH3; BLH4; BLH5; BLH6; BLH7; Bel1; Bel11; Bel13; Bel14; Bel22; Bel29; Bel30; Bel5; C7A10.490; EDA2

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	transporter activity	GO:0005215	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	protein homodimerization activity	GO:0042803	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	protein heterodimerization activity	GO:0046982	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	oligopeptide transport	GO:0006857	Biological Process	-
Sma3	response to symbiotic fungus	GO:0009610	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	polar nucleus fusion	GO:0010197	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	regulation of timing of transition from vegetative to reproductive phase	GO:0048510	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Oligopeptide transporter	IPR000109	-	-
Sma3	Homeodomain	IPR001356	-	-
Sma3	POX	IPR006563	-	-
Sma3	Protein of unknown function DUF604	IPR006740	-	-
Sma3		IPR012287	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G35940.1	BLH1, EDA29 BEL1-like homeodomain 1 chr2:15089171-15091699 REVERSE LENGTH=680	60%
RefSeq	Arabidopsis thaliana	NP_850256.1	BEL1-like homeodomain 1 [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002308323.1	predicted protein [Populus trichocarpa]	45%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: Q5SC62

Fln msg: your sequence is longer than subject: 919 - 438

Fln protein: MISSNNYNLPAASDSRVLPPQNTGHFHTQSPQRNPLVGTIHSVQSLTPNFDGHVNASKSGSWGSGGPQFGMMNNNAFLNLPSLTVNSNAMTADLFAASSIQTSSFGSNGREGSMATYFPGSSIQADTMQTPYLRNRGIVGYTDSLASGNMVLVNNTTGSSLATHNFAGNGQQQQHFIGITVPTASPSQHSSAGAIENSPTEQQSATSSLLTSRLEAHAYDSWQAGGNELTFLQTTDAASSNQSLCGQLNNSVSLGSLPVAERSQVRMRPPSMSSIEEEQSGILPSGLRLQLDPPTTATGQRQGLSLCLFPKHASTVQLPPFQNHSTELDINCPGIAQTASEDNSFRIDRDPRDGMMGGGFSNSLQSPGVSKQIHSSYRGVTGFPNVLRGSKFLKAAQELLDEVVNLSKFGKCEPAKHHKSQTLFGTAADKWDTAKETNIKNGLTDTSAGFLNLAEETNISHNTEISMAERRELQIKKAKLVAMLDEVDQKYKQYYQQMQIVVSSFETVTGFGTAKTYTSLALGTISRHFRCLRDAIVGQICVSSKSLGEEDMAGNGKGETSRLRFVDQQLRQQRALQQLGMIQQPAWRPQRGLPERAVSVLRAWLFEHFLHPYPKDADKHMLARQAGLTRSQVSNWFINARVRLWKPMVEEIYMEEIKEAELGHSSAEKDYKKSGDSKADTKSEEGSESSQNSEDQKHTKTTQLETDAEDVVCEQQNISVSSGLKSEHSPDMRYGRSQAFSIEGVSNDEVFHDVRDEGVTPGKFKKARSGIEGSTYQFSPNMSSIVGFKMEGSCQNDKFNDERHSSENYILVHSGMALADSGGSGCLNRYDGQEAFTPKFSGSGGVSLTLGLQHSDGLSLSGTQQRCISSEGRNHGLGNVSHDYCNISETAAAHAANAYESINLENRKRFATHLLQTL*

Protein Length: 920

Fln nts: AGGGAAGGGGGCCGAGAAAGGGGAAGAAACAAAGGAGGCGGAGCTGTGTCGGGCCCCAAACGCCAACAAAATGGTAACAATGACCAGGAGGAGTTGACCAAATGAGCATATCTCGGGTTAAGGGAGCTAAGACTGTGTTGCACTCGTCACTTTCATGGTGTAGTTTGTCGTTCCGAGACTAACAAGTTTAATACAGGAAATGCATGGGGGATCAAGTCCTTTGATTTGGCTGAGGGATTGCGGTGTTCTATGCTCGTGGTGTTCTTTGTTCATTACCAATCTTCAGCCCAATTATGTGCCACTCCAGCCTTGCAGCAACTAGAATTAGAGGGTCAGAGTGAGGGTGTCAGCAGACACACAGGTGGCAAATACTTATCTATCACATAAACAGCAGAAGCATGGGCTCTGGTAGGTCCAAAGATGTCTCAGCAATCCCCTGCCAGTATGGATCAACTCCCACTACAAACTCATGTTGCACAGCAAATTCGGCGGGATAAACTTAGAATTCAAGGGTTCCAGCACCCATCATCGCCCAAAAGCCACATTAATAGTGGGCATTCAAAACTAGGCAATTCCTGCCTATGAGGAATGCTCTGCAGGATACTTGCAAGGATATCCAGGACATATTGATCAAGATAATATAAAAAATGTATTTCCTGGCCACAACATTCAC_-_ATGATATCTTCTAATAACTATAACCTTCCTGCTGCTTCTGACTCTAGGGTTTTACCACCACAAAATACTGGCCATTTTCATACACAATCGCCACAACGAAATCCTCTTGTTGGAACCATACATTCTGTACAATCTCTGACACCTAATTTCGATGGTCATGTGAATGCATCAAAATCAGGAAGCTGGGGTTCTGGAGGCCCTCAGTTTGGGATGATGAATAATAATGCTTTCCTGAATTTGCCATCATTAACTGTCAATAGTAATGCAATGACAGCAGATTTATTTGCTGCTTCAAGCATACAGACAAGTTCGTTTGGATCAAACGGCAGAGAGGGAAGCATGGCTACATATTTTCCAGGTTCAAGTATCCAAGCTGACACCATGCAGACACCTTATCTAAGGAACCGGGGTATTGTAGGTTATACCGATTCATTGGCTTCTGGGAACATGGTACTTGTTAACAATACAACAGGAAGTTCATTAGCAACTCATAATTTTGCTGGCAATGGGCAACAGCAACAGCATTTCATTGGAATCACAGTTCCAACTGCTTCTCCTTCCCAACACTCCTCTGCTGGGGCTATAGAAAATTCTCCTACAGAACAACAAAGTGCCACTTCAAGTCTACTCACATCACGCCTTGAGGCCCATGCTTATGATTCTTGGCAAGCTGGAGGAAATGAGCTAACATTCCTGCAGACAACAGATGCAGCATCTAGTAATCAATCCCTTTGTGGACAATTGAACAATTCTGTTAGTCTGGGGAGTCTTCCAGTTGCTGAGAGATCTCAGGTTAGAATGAGGCCCCCATCTATGTCCTCTATTGAAGAAGAACAATCAGGAATTCTTCCCAGTGGATTACGTTTGCAATTAGATCCACCAACAACTGCCACTGGACAGAGACAGGGGCTTTCTCTGTGTCTTTTTCCAAAACATGCATCAACTGTTCAATTGCCACCCTTTCAAAATCACTCCACTGAGTTGGATATAAATTGCCCAGGCATTGCTCAAACGGCTTCAGAAGACAACTCATTTAGAATTGACAGGGATCCTAGAGATGGGATGATGGGAGGTGGGTTTTCAAATTCTCTTCAGAGTCCTGGAGTTAGCAAACAAATACATTCCAGTTACAGAGGAGTAACTGGGTTCCCTAATGTTCTGAGAGGCTCCAAATTTCTCAAAGCAGCACAGGAGTTGCTTGATGAAGTCGTGAATCTTAGCAAGTTCGGAAAGTGTGAGCCAGCCAAACACCATAAATCACAAACATTATTTGGTACTGCTGCTGACAAATGGGATACTGCCAAAGAAACTAACATAAAGAATGGTTTAACAGATACAAGTGCAGGATTTTTAAATTTAGCTGAAGAAACAAATATCTCCCATAATACTGAGATCAGTATGGCAGAAAGACGAGAGCTTCAAATAAAGAAGGCAAAACTTGTGGCTATGCTTGATGAGGTGGATCAAAAATACAAACAATACTACCAACAAATGCAAATTGTAGTTTCATCATTTGAAACTGTGACTGGGTTTGGGACTGCAAAGACATACACTTCCCTTGCTCTTGGAACTATCTCTAGGCACTTTCGATGCTTGAGAGATGCAATTGTGGGTCAAATTTGTGTGTCCAGCAAAAGTTTGGGTGAGGAAGATATGGCAGGAAATGGTAAAGGTGAAACATCTCGTCTCCGATTTGTAGATCAACAACTGAGGCAGCAGCGAGCTCTTCAACAACTAGGAATGATTCAACAACCTGCCTGGAGGCCACAGAGAGGTTTGCCAGAGCGAGCAGTTTCTGTCCTACGAGCTTGGTTATTTGAGCATTTCCTTCATCCGTATCCCAAAGATGCTGACAAACATATGCTAGCAAGGCAGGCAGGTTTGACAAGAAGCCAGGTCTCAAATTGGTTCATAAATGCACGTGTCCGTCTCTGGAAGCCCATGGTAGAAGAAATATATATGGAAGAAATCAAGGAAGCTGAGTTAGGACATTCATCAGCTGAAAAGGACTACAAGAAAAGTGGTGATAGCAAGGCAGATACAAAGTCAGAGGAAGGATCTGAAAGTAGTCAGAACAGTGAAGATCAGAAGCATACCAAGACAACGCAACTTGAAACTGATGCAGAGGATGTTGTCTGTGAGCAACAAAACATTTCAGTAAGCAGTGGTTTGAAGTCGGAGCATTCTCCTGATATGAGATATGGCAGAAGTCAAGCATTCAGCATAGAAGGGGTATCAAATGATGAGGTGTTTCATGATGTACGGGATGAGGGTGTGACACCAGGGAAGTTTAAGAAGGCTAGAAGTGGAATTGAAGGTTCTACATATCAATTTTCTCCAAATATGAGTTCAATTGTAGGTTTCAAAATGGAGGGAAGCTGCCAAAACGACAAATTTAATGATGAAAGACACAGTAGTGAGAATTACATTCTTGTTCACAGTGGCATGGCACTTGCAGATAGTGGTGGAAGTGGCTGTTTGAACAGATACGATGGACAAGAGGCATTTACCCCCAAGTTTTCTGGAAGTGGTGGGGTATCACTCACTTTGGGACTTCAACACTCTGATGGTTTATCATTATCTGGAACTCAACAAAGATGCATTTCCAGCGAAGGAAGGAATCACGGGCTTGGAAATGTCTCTCATGATTATTGTAATATTAGTGAGACTGCAGCTGCTCATGCTGCAAACGCTTATGAGAGCATCAACTTAGAAAACAGAAAGCGCTTCGCTACTCATTTATTGCAAACTTTGTAG___CTTAGGTCAATGGAGATATGCTGTATACTATGTCCTTTGTGTGACTTTTCTGTCTAGCATAGCTTTTCTGTTAATTCTTTTCCATCCCTACAGTGGCATAGCCCTGTAATGGGGCTATTTTCCACATTGATACTCTTCTGTGATCATGTATCCTTGAATGGGTTTGGACCAATCTATTTGTCATAAACCTAATATTTAAGGATTTCTTGATTTTGGTGTTGTAATTATTACGAGGCTTCTTCCTTCAAATGCACTTGGAGGAAAGAAGCATAAGCCATTTGTAAAATTCGTATTAAACAGAAAAATCAGATTTCTTAACGCACTCATTGTAAGCTCACTTAATATGTGATTCATATTGACGTTTCTAGAAATCATATAATCGTTATTGTTGATTCCTCTACC

Fln Alignment:

Contig3444___LPERAVSVLRAWLFEHFLHPYPKDADKHMLARQAGLTRSQVSNWFINARVRLWKP
Q5SC62______________LPKEARQKLLEWWNVHYKWPYPSETDKVSLAESTGLDQKQINNWFINQRKRHWKP

SNPs (tot: 41)

Position	A %	C %	G %	T %	Probability
438		66		33	0.997452
439			33	66	0.997452
440		33	66		0.997452
442		66		33	0.997452
611	20	80			0.995493
612	20			80	0.995493
635	25			75	0.996473
636		25	75		0.996473
639		75		25	0.996473
721	66		33		0.997452
962	66		33		1.0
1108	75	25			1.0
1109			25	75	1.0
1113			25	75	1.0
1116	25		75		1.0
1118		25		75	1.0
1125			75	25	1.0
1126	75		25		1.0
1127	75			25	1.0
1130		25		75	1.0
1131			75	25	1.0
1132		25	75		1.0
1133	25			75	1.0
1227	87		12		0.992554
1228	87			12	0.992554
1235		87	12		0.992554
1236			12	87	0.992554
1238		85		14	0.993533
1239			14	85	0.993533
1242	14	85			0.993533
1244	85			14	0.993533
1245	85	14			0.993533
1246	14	85			0.993533
1256		85		14	0.993533
1514	83			16	0.994512
1567	83		16		0.994512
1881			33	66	0.997452
2041			66	33	0.997452
3081		14		85	0.993533
3282		85		14	1.0
3621	89		10		0.999919

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain