SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3443

Length: 2199 nt

UniGene Fasta

>sp_v3.0_unigene3443
ATTAGATCCGCTGGCTCCTCCATTTGATCCAACAATGCATGAAACGTCGCTGTCGTCCGCAGAATGCAGTATGTCTGACAGACCCACAGCCACAGATTGCCTATCTGATGGGAGCTTGGAAAGTTTCAAATTTCACAGGAAACCCTAATTTTCTTATTATATTACATCGCTCTCTGCACGAAGAAGAATGCATGCTCTCTCTGAATTAAAAAAAGGGAGAGGAAAAGAAGCTGATAATATTTGATTCTGGAGGAAGAATATATTGGGCTTTGAATCGGTTCTGGTAGCTGTTTGTTATTTTATTTTGGCCATTTATGTGGCAGTAGAGTACAGAGTTGCTGGCCCTTATCATTATATGCGATGGCAGAACAGCCGAAGTTTGAGGGAGCAACTTTATGGGCAATTAGTGCAGGATTGGCTTTCTTTGTGCTGTTTCTGAAATGGGTTTTTGGCAAGGGCAGGAGAGCTAGAAAAGGATTGCCCCCTGGAAGCTTGGGATGGCCTCTGTTAGGAGAGACTCTCCAGCTAATTTCAGCCTACAAAACATCAAATCCGGAACCATTTGTGGACACCAGGAGATCCCGATATGGGAAAGTGTTCAAAACCCACTTGTTTGGAAAGCCCACAATCTTCTCCACAGATCCAGAAGTGAACAAATTCATACTGCAAAACGAAGGGAAGCTGTTTGCAACCAGCTATCCAAGCTCTATTGCCAATCTACTTGGAAAGGATTCTTTGCTCCTGATGCAAGGAAACCTGCATAAACGGTTGCATTCTCTCACACTGAGCTTTGCAAATTCGTCTGTTCTCAAAGACCATCTTATGTTCGACATTGAGAAGCTTGTCTGTTTAACTCTAGATGGCTGGAAAGATCACGTTCTTCTTCAAGATGAAGCAAAAAAGATAACCTTTGAATTGACAGTGAAGCAGCTATTGAGCTTTGATCCTGGTCAATGGTCTGAGAATCTGAGGAAAGAGTACTTGCAGCTTATTGATGGATTCTTTTCATTACCAGTGCCACTGCCATTCACAACTTATGGCAAGGCTCTAAAGGCCAGGGCCAAAGTTGCAGAAGAGCTGAGACTGATTGTACTAAAACGAAGACGAGATTCTGATAGCAGCGATCACTATGACATGTTAGCAGCACTTCTAAATGAAAAAATCACTACTGCATCTGAGGGTCTCTCGGATGATCAAATAATTGACCTGCTCTTGTCTCTGCTGGTTGCTGGATATGAGACAACATCCACCATAATGACCTTGGCTGTCAAGTTCCTCACGGAGACACCAGATGCGTTGGCCCAATTAAAGGAAGAGCATGAAGCAATCAGGAAGCGAAAAATCGGAGCTCAAAGGTTGGAGTGGAGTGATTACAAGTCAATGGCATTTACTCAGTGTGTTATAAGTGAGACTCTCAGAATTGCTAATATAATATCAGGCGTGTTTAGAAGAGCCTTATGCGATGTTGAAATAAAAGGGTTCAATATTCCCCAAGGTTGGCCGGTTTTTCCATGTTTCAGAGCAGTTCATCTGGACCAAGAATTCTACTCTGATGCTCGGAAGTTCAATCCGTGGAGGTGGCAAGAAAACCATCCATCTACAAGCTCTGGAACTGTCTTTACACCTTTTGGGGGAGGGCCTCGCCTGTGTCCAGGCTATGAACTAGCCAGAGTTGAAATCTCAGTTTTTCTTCATCACATGGTGACTCTGTTCAGTTGGGAGGTTGTGGAGGAAGACAAGCTCATCTTCTTTCCTACTACAAGAACAGTGAAGAGATACCCCATCAACCTCACAAGAAGGGGAAGAAGGTCACCACTTGATATATAAACAACCCAGTGTTGATGCACTTGTCTCAGCACCAGTTGGTCGTTAGCCAACTCCCGTAAACATTTAGAAAATATTTTATTTATTTATTTCATAGCATTTTGATTGTCTTTATATATGAAACGAAGGTTTATTTAAGCACCAGACAGAAGATAGAATTTTGCTCAGAAGGAAAGTATGGGCATGTTGAAACCCTGATACGTTACGGTTTCAACTTGCCCATAATTATTACTTCATGGTTTCATACAGCTTTGTGTCCTTGCTAGAAGGAATGTATATAATTTACATGATGAAAATGTATTTCTTTGTCTGAATTTCCTATAGAAGGAATGTATATAATTTACATGATGAAAATGTATTTCTTTGTCCGAATTT

Ace file of the UniGene sp_v3.0_unigene3443

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Cytochrome P450 90A20 n=1 Tax=Picea sitchensis RepID=A9NWM7_PICSI	-	-	88%
FL-Next	tr=Cytochrome P450 90A20; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	heme binding	GO:0020037	Molecular Function	-
Sma3	iron ion binding	GO:0005506	Molecular Function	-
Sma3	monooxygenase activity	GO:0004497	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Cytochrome P450	IPR001128	-	-
Sma3		IPR017973	-	-
Sma3	Cytochrome P450, conserved site	IPR017972	-	-
Sma3	Cytochrome P450, E-class, group I	IPR002401	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G05690.1	CPD, CYP90A, CYP90, CBB3, DWF3, CYP90A1 Cytochrome P450 superfamily protein chr5:1702907-1706705 REVERSE LENGTH=472	67%
RefSeq	Arabidopsis thaliana	NP_196188.1	cytochrome P450 90A1 [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002311214.1	cytochrome P450 probable 6-deoxocathasterone to 6-deoxoteasterone or cathasterone to teasterone [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWM7

Fln msg:

Fln protein: MAEQPKFEGATLWAISAGLAFFVLFLKWVFGKGRRARKGLPPGSLGWPLLGETLQLISAYKTSNPEPFVDTRRSRYGKVFKTHLFGKPTIFSTDPEVNKFILQNEGKLFATSYPSSIANLLGKDSLLLMQGNLHKRLHSLTLSFANSSVLKDHLMFDIEKLVCLTLDGWKDHVLLQDEAKKITFELTVKQLLSFDPGQWSENLRKEYLQLIDGFFSLPVPLPFTTYGKALKARAKVAEELRLIVLKRRRDSDSSDHYDMLAALLNEKITTASEGLSDDQIIDLLLSLLVAGYETTSTIMTLAVKFLTETPDALAQLKEEHEAIRKRKIGAQRLEWSDYKSMAFTQCVISETLRIANIISGVFRRALCDVEIKGFNIPQGWPVFPCFRAVHLDQEFYSDARKFNPWRWQENHPSTSSGTVFTPFGGGPRLCPGYELARVEISVFLHHMVTLFSWEVVEEDKLIFFPTTRTVKRYPINLTRRGRRSPLDI*

Protein Length: 490

Fln nts: ATTAGATCCGCTGGCTCCTCCATTTGATCCAACAATGCATGAAACGTCGCTGTCGTCCGCAGAATGCAGTATGTCTGACAGACCCACAGCCACAGATTGCCTATCTGATGGGAGCTTGGAAAGTTTCAAATTTCACAGGAAACCCTAATTTTCTTATTATATTACATCGCTCTCTGCACGAAGAAGAATGCATGCTCTCTCTGAATTAAAAAAAGGGAGAGGAAAAGAAGCTGATAATATTTGATTCTGGAGGAAGAATATATTGGGCTTTGAATCGGTTCTGGTAGCTGTTTGTTATTTTATTTTGGCCATTTATGTGGCAGTAGAGTACAGAGTTGCTGGCCCTTATCATTATATGCG_-_ATGGCAGAACAGCCGAAGTTTGAGGGAGCAACTTTATGGGCAATTAGTGCAGGATTGGCTTTCTTTGTGCTGTTTCTGAAATGGGTTTTTGGCAAGGGCAGGAGAGCTAGAAAAGGATTGCCCCCTGGAAGCTTGGGATGGCCTCTGTTAGGAGAGACTCTCCAGCTAATTTCAGCCTACAAAACATCAAATCCGGAACCATTTGTGGACACCAGGAGATCCCGATATGGGAAAGTGTTCAAAACCCACTTGTTTGGAAAGCCCACAATCTTCTCCACAGATCCAGAAGTGAACAAATTCATACTGCAAAACGAAGGGAAGCTGTTTGCAACCAGCTATCCAAGCTCTATTGCCAATCTACTTGGAAAGGATTCTTTGCTCCTGATGCAAGGAAACCTGCATAAACGGTTGCATTCTCTCACACTGAGCTTTGCAAATTCGTCTGTTCTCAAAGACCATCTTATGTTCGACATTGAGAAGCTTGTCTGTTTAACTCTAGATGGCTGGAAAGATCACGTTCTTCTTCAAGATGAAGCAAAAAAGATAACCTTTGAATTGACAGTGAAGCAGCTATTGAGCTTTGATCCTGGTCAATGGTCTGAGAATCTGAGGAAAGAGTACTTGCAGCTTATTGATGGATTCTTTTCATTACCAGTGCCACTGCCATTCACAACTTATGGCAAGGCTCTAAAGGCCAGGGCCAAAGTTGCAGAAGAGCTGAGACTGATTGTACTAAAACGAAGACGAGATTCTGATAGCAGCGATCACTATGACATGTTAGCAGCACTTCTAAATGAAAAAATCACTACTGCATCTGAGGGTCTCTCGGATGATCAAATAATTGACCTGCTCTTGTCTCTGCTGGTTGCTGGATATGAGACAACATCCACCATAATGACCTTGGCTGTCAAGTTCCTCACGGAGACACCAGATGCGTTGGCCCAATTAAAGGAAGAGCATGAAGCAATCAGGAAGCGAAAAATCGGAGCTCAAAGGTTGGAGTGGAGTGATTACAAGTCAATGGCATTTACTCAGTGTGTTATAAGTGAGACTCTCAGAATTGCTAATATAATATCAGGCGTGTTTAGAAGAGCCTTATGCGATGTTGAAATAAAAGGGTTCAATATTCCCCAAGGTTGGCCGGTTTTTCCATGTTTCAGAGCAGTTCATCTGGACCAAGAATTCTACTCTGATGCTCGGAAGTTCAATCCGTGGAGGTGGCAAGAAAACCATCCATCTACAAGCTCTGGAACTGTCTTTACACCTTTTGGGGGAGGGCCTCGCCTGTGTCCAGGCTATGAACTAGCCAGAGTTGAAATCTCAGTTTTTCTTCATCACATGGTGACTCTGTTCAGTTGGGAGGTTGTGGAGGAAGACAAGCTCATCTTCTTTCCTACTACAAGAACAGTGAAGAGATACCCCATCAACCTCACAAGAAGGGGAAGAAGGTCACCACTTGATATATAA___ACAACCCAGTGTTGATGCACTTGTCTCAGCACCAGTTGGTCGTTAGCCAACTCCCGTAAACATTTAGAAAATATTTTATTTATTTATTTCATAGCATTTTGATTGTCTTTATATATGAAACGAAGGTTTATTTAAGCACCAGACAGAAGATAGAATTTTGCTCAGAAGGAAAGTATGGGCATGTTGAAACCCTGATACGTTACGGTTTCAACTTGCCCATAATTATTACTTCATGGTTTCATACAGCTTTGTGTCCTTGCTAGAAGGAATGTATATAATTTACATGATGAAAATGTATTTCTTTGTCTGAATTTCCTATAGAAGGAATGTATATAATTTACATGATGAAAATGTATTTCTTTGTCCGAATTT

Fln Alignment:

Contig3443___MAEQPKFEGATLWAISAGLAFFVLFLKWVFGKGRRARKXXXXXXXXXXXXXETLQLISAYKTSNPEPFVDTRRSRYGKVFKTHLFGKPTIFSTDPEVNKFILQNEGKLFATSYPSSIANLLGKDSLLLMQGNLHKRLHSLTLSFANSSVLKDHLMFDIEKLVCLTLDGWKDHVLLQDEAKKITFELTVKQLLSFDPGQWSENLRKEYLQLIDGFFSLPVPLPFTTYGKALKARAKVAEELRLIVLKXXXXXXXXXHYDMLAALLNEKITTASEGXXXXXXXXXXXXXXVAGYETTSTIMTLAVKFLTETPDALAQLKEEHEAIRKRKIGAQRLEWSDYKSMAFTQCVISETLRIANIISGVFRRALCDVEIKGFNIPQGWPVFPCFRAVHLDQEFYSDARKFNPWRWQENHPSTSSGTVFTPFGGGPRLCPGYELARVEISVFLHHMVTLFSWEVVEEDKLIFFPTTRTVKRYPINLTRRGRRSPLDI
A9NWM7______________MADQPKLEGATLWAISAGLAFLVLFLQWVFGKGRRTRKGLPPGSMGWPLLGETLQLIAAYKTSNPEPFVDTRRSRYGKVFKTHLFGKPTIFSTDPEVNKFILQNEGKLFATSYPSSITNLLGKHSLLLIQGNLHKRLHSLTLSFANSSVLKDHLMFDIEKLVCLTLDGWKDHVLLQDEAKKITFELTVKQLLSFDPGQWSENLRKEYLQLIDGFFSLPVPLPFTTYGKALKARAKVAEELRL-VLKRRRDSESSDHYDMLAALLNEKSTTTSDGLSDDQIIDLLLSLLVAGYETTSTIMTLAVKFLTETPDALAQLKEEHEAIRKQKPGAQRLEWSDYKSMAFTQCVISETLRIANIISGVFRRALCDVEIKGFNIPQDWLVFPCFRAVHLDQELYSDARKFNPWRWQGNHPSTSSGTVFTPFGGGPRLCPGYELARVEISVFLHHMVTLFSWEVVEEDKLIFFPTTRTVKRYPINLTRRGRRSPLEI

SNPs (tot: 13)

Position	A %	C %	G %	T %	Probability
193		33	66		1.0
428			33	66	0.997452
1255	71		28		1.0
1257	71	28			1.0
1258	71		28		1.0
1269		14		85	0.993533
1844	10		90		0.90298
1845	90			10	0.90298
2076	14		85		0.993533
2078	14			85	0.993533
2098	50		33		1.0
2129	16			83	0.994512
2145		60		40	1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
1902	1916	TTTA TTTA TTTA TTT	15

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain