SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3426

Length: 1991 nt

UniGene Fasta

>sp_v3.0_unigene3426
GCTTGCTTTAATATGGTGCCAGATTGTATATAAAGTTTCAGCTCGAGCCATCATTCATTCGAAAGAGTAGAATAGCAGAGTTTCATGAATAAGAGTCAGAACTTGCCGGCAATTTTCGGTTTTATGGATGCAATAACGAGTTTATCCCTTTCTTCAACCTGCGATTGCCATTTTGAGGTTTTCGCCGATCAATTTGCTTCCTGATGTTAGTGGTTTCGCTTCGTTTCTCAAATAATACGATTTATGTCGGTTTGACGCCTAAGAAATCCTTTTAAAGACTGGAAGATCACGTTAATCTGGCCTTTCTCTGCAAAATATTGGCTACAAAGATGATATTCAACTCCGTCAGCTACGTTGATTGCCTTGCTTGCTTTAATATGGTGCCAGATTGTATATAAAGTTTCAGCTCGAGCCATCATTCATTCTAAAAATCAGATTGGAAGTATTCAGAAACGATAAACTGCAAATTCAAGGCACTGATCTTGTGTATGGACTTCAGTACCATGCGTGGAACTTCATCCAGGTTTAAGCATATAATGAAATTGGGACTTGAAGATTTCAACTAAAATATTGCTATCTTCACTCTGGCTCATCAGCTGTTGTTACAAGGAAACACAAATTACGGCATTGCATAAAAGTTGAAACGGTCTATGACATGCCACAAGGTTCCCATCTCATAAAAGGATCATGAGTTATCTTAGTTCTATATTTTCTTCTAGGGATCCACAATGCATCAGCATCCCTGCCAGTGGTGGAGGTGTCAGTCAGAATCAGAAGTTCAGCTATGGATTTGCAAGCTCACCAGGGAAAAGATCTTCAATGGAAGACTTTTTTGAGACACAGATTTGTGAGGTTGATGGTCAAATGGTTGGCTTGTTTGGAGTCTTTGATGGTCATGGTGGTGCTCGAGCTGCAGAATACGTGAAACAGAAACTTTTTGCAAATTTGATAAGCCACCCAAAATTTATTAGTGATACAAAGCTGGCAATAGCTGATGCTTACAAACAAACAGACAAGGAATTTCTCAATACAGAAAATAGTCAACACAGAGATGCTGGGTCAACTGCATCAACTGCAGTTCTTGTAGGGGATCGATTGCTGGTTGCAAACGTTGGGGATTCGAGAGCTGTTATATGCAGGGCTGGAAAAGCTGTTGCTCTTTCTCGGGATCATAAACCAAATCAAACTGACGAGCGTCAACGAATTGAGGATGCTGGAGGATTTGTTATGTGGGCTGGTACATGGCGTGTTGGGGGGGTTCTTGCTGTTTCGCGTGCTTTCGGTGACAGACTTTTAAAGCAGTATGTTGTAGCTGAGCCAGAGATTCAGGAAGAGGTCGCTGATGAAAATGTTGAATTTCTTATTCTTGCGAGTGATGGATTGTGGGATGTTGTCTCTAACCAGGATGCAGTTGCAATGATTCAGTCTACTGAGGATCCAGAATTAGCTGCAAAAAAGCTTACAGAGGAAGCATATAAAAAAGGCAGTGCAGATAATATTACTTGTGTTGTAGTGCGATTTAACCATGGTTAACAGAGGCAATTAAAATTTTAACTGATGCAAAATCCACATTGCAAGAGCCTTGTATGCTACCAACCTTTTGTTGCTTGAAGTTTGTTGAAGGTGGCCTAGTTTCTTCATATTTGGTTAGATTGCATGCAAATTATGCGATATAATTCTACCTATTACAGTTATAATGCCAGTTGAATAGGTCAAGGTAAGTTGCACACGGTCTGCTGTTTAGATAAAAAAGGGCATGCTTGTCATAATATGTGAAAATTTTTCATACTGAATAAACATGCTTTTATAAATTGTTAAGTTTGTTTACCATTTTATTATGTTCATCAATATCAAGAAGCAATGCCTGGATTCAACTCCTGTCAAATAAGTGTATGGGTTAAATGGGCTTTATACCTGGGATTTTATATTATTTGTCAAAAAATATTCATTATAATTATGATCTTTGGATTGTTAATAATAATGAATAATTT

Ace file of the UniGene sp_v3.0_unigene3426

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Probable protein phosphatase 2C 59 n=5 Tax=Magnoliophyta RepID=P2C59_ARATH	-	-	78%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	97%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	Identity
Sma3	protein serine/threonine phosphatase complex	GO:0008287	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	-
Sma3	protein dephosphorylation	GO:0006470	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3		IPR014045	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G31750.1	WIN2 HOPW1-1-interacting 2 chr4:15364657-15367207 REVERSE LENGTH=311	78%
RefSeq	Arabidopsis thaliana	NP_194903.2	putative protein phosphatase 2C 59 [Arabidopsis thaliana]	78%
RefSeq	Populus trichocarpa	XP_002308720.1	predicted protein [Populus trichocarpa]	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NWY3

Fln msg:

Fln protein: MSYLSSIFSSRDPQCISIPASGGGVSQNQKFSYGFASSPGKRSSMEDFFETQICEVDGQMVGLFGVFDGHGGARAAEYVKQKLFANLISHPKFISDTKLAIADAYKQTDKEFLNTENSQHRDAGSTASTAVLVGDRLLVANVGDSRAVICRAGKAVALSRDHKPNQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVAEPEIQEEVADENVEFLILASDGLWDVVSNQDAVAMIQSTEDPELAAKKLTEEAYKKGSADNITCVVVRFNHG*

Protein Length: 283

Fln nts: GCTTGCTTTAATATGGTGCCAGATTGTATATAAAGTTTCAGCTCGAGCCATCATTCATTCGAAAGAGTAGAATAGCAGAGTTTCATGAATAAGAGTCAGAACTTGCCGGCAATTTTCGGTTTTATGGATGCAATAACGAGTTTATCCCTTTCTTCAACCTGCGATTGCCATTTTGAGGTTTTCGCCGATCAATTTGCTTCCTGATGTTAGTGGTTTCGCTTCGTTTCTCAAATAATACGATTTATGTCGGTTTGACGCCTAAGAAATCCTTTTAAAGACTGGAAGATCACGTTAATCTGGCCTTTCTCTGCAAAATATTGGCTACAAAGATGATATTCAACTCCGTCAGCTACGTTGATTGCCTTGCTTGCTTTAATATGGTGCCAGATTGTATATAAAGTTTCAGCTCGAGCCATCATTCATTCTAAAAATCAGATTGGAAGTATTCAGAAACGATAAACTGCAAATTCAAGGCACTGATCTTGTGTATGGACTTCAGTACCATGCGTGGAACTTCATCCAGGTTTAAGCATATAATGAAATTGGGACTTGAAGATTTCAACTAAAATATTGCTATCTTCACTCTGGCTCATCAGCTGTTGTTACAAGGAAACACAAATTACGGCATTGCATAAAAGTTGAAACGGTCTATGACATGCCACAAGGTTCCCATCTCATAAAAGGATC_-_ATGAGTTATCTTAGTTCTATATTTTCTTCTAGGGATCCACAATGCATCAGCATCCCTGCCAGTGGTGGAGGTGTCAGTCAGAATCAGAAGTTCAGCTATGGATTTGCAAGCTCACCAGGGAAAAGATCTTCAATGGAAGACTTTTTTGAGACACAGATTTGTGAGGTTGATGGTCAAATGGTTGGCTTGTTTGGAGTCTTTGATGGTCATGGTGGTGCTCGAGCTGCAGAATACGTGAAACAGAAACTTTTTGCAAATTTGATAAGCCACCCAAAATTTATTAGTGATACAAAGCTGGCAATAGCTGATGCTTACAAACAAACAGACAAGGAATTTCTCAATACAGAAAATAGTCAACACAGAGATGCTGGGTCAACTGCATCAACTGCAGTTCTTGTAGGGGATCGATTGCTGGTTGCAAACGTTGGGGATTCGAGAGCTGTTATATGCAGGGCTGGAAAAGCTGTTGCTCTTTCTCGGGATCATAAACCAAATCAAACTGACGAGCGTCAACGAATTGAGGATGCTGGAGGATTTGTTATGTGGGCTGGTACATGGCGTGTTGGGGGGGTTCTTGCTGTTTCGCGTGCTTTCGGTGACAGACTTTTAAAGCAGTATGTTGTAGCTGAGCCAGAGATTCAGGAAGAGGTCGCTGATGAAAATGTTGAATTTCTTATTCTTGCGAGTGATGGATTGTGGGATGTTGTCTCTAACCAGGATGCAGTTGCAATGATTCAGTCTACTGAGGATCCAGAATTAGCTGCAAAAAAGCTTACAGAGGAAGCATATAAAAAAGGCAGTGCAGATAATATTACTTGTGTTGTAGTGCGATTTAACCATGGTTAA___CAGAGGCAATTAAAATTTTAACTGATGCAAAATCCACATTGCAAGAGCCTTGTATGCTACCAACCTTTTGTTGCTTGAAGTTTGTTGAAGGTGGCCTAGTTTCTTCATATTTGGTTAGATTGCATGCAAATTATGCGATATAATTCTACCTATTACAGTTATAATGCCAGTTGAATAGGTCAAGGTAAGTTGCACACGGTCTGCTGTTTAGATAAAAAAGGGCATGCTTGTCATAATATGTGAAAATTTTTCATACTGAATAAACATGCTTTTATAAATTGTTAAGTTTGTTTACCATTTTATTATGTTCATCAATATCAAGAAGCAATGCCTGGATTCAACTCCTGTCAAATAAGTGTATGGGTTAAATGGGCTTTATACCTGGGATTTTATATTATTTGTCAAAAAATATTCATTATAATTATGATCTTTGGATTGTTAATAATAATGAATAATTT

Fln Alignment:

Contig3426___MSYLSSIFSSRDPQCISIPASGGGVSQNQKFSYGFASSPGKRSSMEDFFETQICEVDGQMVGLFGVFDGHGGARAAEYVKQKLFANLISHPKFISDTKLAIADAYKQTDKEFLNTENSQHRDAGSTASTAVLVGDRLLVANVGDSRAVICRAGKAVALSRDHKPNQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVAEPEIQEEVADENVEFLILASDGLWDVVSNQDAVAMIQSTEDPELAAKKLTEEAYKKGSADNITCVVVRFNHG
A9NWY3______________MSYLSSIFSSRDPQCVSIPVSGGGVSQNQKFSYGYASSPGKRSSMEDFFDTQICEVDGQIVGLFGVFDGHGGARAAEYVKQKLFANLISHPKFISDTKLAIADAYKQTDKEFLNTENSQHRDAGSTASTAVLVGDRLLVANVGDSRAVICRAGKAVALSRDHKPNQTDERQRIEDAGGFVMWAGTWRVGGVLAVSRAFGDRLLKQYVVAEPEIQEEVADENVEFLILASDGLWDVVSNQDAVAMIQSTEDPELAAKKLTEEAYRKGSADNITCVVVRFSHG

SNPs (tot: 6)

Position	A %	C %	G %	T %	Probability
699	3			96	0.988113
709		1		93	0.999965
787	4		95		0.994598
788		4	95		0.994598
959	33	33			1.0
1780	50			45	1.0

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain