SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3406

Length: 2470 nt

UniGene Fasta

>sp_v3.0_unigene3406
GATACATAATGTGTATATCCTTGCAAGCCATGTCATTTGTGCGCTGTGCAACAGAATACTGAATTTCGGTGATTAATGGTTTGTCAAAAGCCTGCAGCACCCACATGTCCTGTTGTAAAATTTACTCCTTGCATTTATGAATCATTGTTATTGGCTATAATACGTTTGGTTGGACCTCTCAATGCGTTGAATCCAAGTCTTCTCCTTGGGATAATATGCCCTCCAGCGCTAGACTCATCCATGGATTCTTTGTACCAGACTATATATATTTGGTATAAAACATGTCTTGTAGAGCTTCTACAACGGTCCTGTATTTGGATTTCAAATTGAAAACTAGGTGGGTTTGTCACAAGAACTGGCCATGGTAACAATATAATCTTGAGAGATATTGCAATGACTCCTGGATTTGAGTCTCCTGCACCATCTCCATATTTGGGTTCTGAGTTTGCAGACAAAGGATCTCACAAAGCCCATGCAGTGACTGCAATAATAGCTGTTGTTTGCAGTTTGGTTGTCCTGTTAATAATGTTGCTTGGATTCTGCTGCTACAAACGTTCAAATGCCCGGAGGATTAATAGATCCTTCCTTAAAGCCAATTGTAGGAGGAGTCCCGGACAGTCCAGTGGTTCCTATGCTTCAGATCTGGAGAAAAGTTCAGCAGAGTACACGAATCCTTCGGTTTCTTCCATGCGGGTCATCTCAACGACTCCGGAAGTTCAGGTTTTCACATATAAACAGCTTCGATTTGCCACAAACAACTTCAGCTCTGCCAATGTGATTGGAAATGGGGGCTTTGGTTTGGTGTATAGGAGTGTCCTGCTTGATGGCAGAGTGACAGCCATCAAACAGCTTGACAGAGATGGCCAACAAGGAGAACGTGAATTCAGAGTTGAGGTGGACCTTCTAAGCCGCCTGCATTCACCATATCTGCTTCAGCTGATTGGTTACTGTGCGGATCAAGACCACCGTCTTCTTGTGTATGAGTATATGTCCAATGGGAGTGTGCAGGAGCACCTTTATTCTGATGGTTCACCAGGCAATCCACCGTTGTTAGATTGGGGAACAAGAATGAAAATAGCTCTGGATGGGGCTAGAGGCCTTGAATACCTTCATGACCATATTACTCCACCAGTGATACACCGGGATTTTAAGGCCAGCAACATCCTACTTGACAAAAATTACAATGCCAAAGTGTCTGATTTTGGGCTGGCAAAGCTTGGTTCTGAAAAATTGAATGGTGAAATCTCCACTCGAATTTTAGGAACTACGGGATATGTTGCCCCAGAGTATGCTTTGACAGGACACCTGACGACAAAATCAGATGTTTACAGCTTTGGTGTTGTGCTTTTAGAGCTTTTGACAGGCCGTGTTCCTGTAGACATGAAGAGGCCTCCTGGACAAGGCATACTCGTCTCTTGGGCTCTTCCATACCTCACTGACAGAGAGAAGGTTACACAGCTGGTCGATCCTGTTCTGGAAGGGCAGTACTCAAAGAAGGAACTAATACAGGTTGCAGCCATTGCAGCAATGTGTGTTCAATCAGAAGCAGATTATCGACCTCTGATGACTGATGTAGTTCAGTCACTGATTCCCCTTGTGAAACAGCATACTGGTTCCAGAGTGACAAGCTCTCCCAAATTCCGCCACCATATTGTCACTATCAAATCCTCTTCAGTTGATAGTGGAAGCAGTGGAACAAGCCTTAATAGCCCAAGAATAATGGCTTGAACCAAGGACTGGGAAAAATTTACAGACAGCTAAGCCACAACCATCTTATGTTTGGGGTGCCAGTATAGGCCTCCGAATACATATATAGGGCACTGATGAATCAGCCATCCAAGTGGGAAGAAGATATACACCTCTATCTTCAAAGGATTGGGGGTTGGTCCTCCCGAACTCACACAATTGAGAGATTTATCCCCATGCTCTTGATGAAACTAACCGAGAAAGGAAACCTTAGCACTATTTCCTTATCCTCTGTAGCCGTGGAGCCAACATATTGAACTCCCACACTAATCACAAGGCATGTTTGTTTCGAACTTGTCTTCATAACTGCTATACTGGATGGTGAACTAACTACCTGAGCAGCTGCTAGTGCATCTGCACAATAGGGGGTACTCTCCTATCTAAAGTTGGGTGGCTCGGAAAGAAAGCATTTTAAGTACAAATCAAGCTTCAGCTCTTTTGTATCATCCAGACTGTTGGGACGGTGACTCTATCCTACCCTGCATTAAATTGTAGACCTGTATATCTGAGTAACAATATTCTCATGTTGCTGTTGATATATAGGCTGTTTCAGTAATCTAGATTTAAAAATTTGCCATATCTCTGCCCTAACTTGAGGTGTAATTCACGTAGGAAAGTGTGTCTAGGTGGTTATTCTCGGTTGGCCATGCCATAAATCTATCTTGCTCTGATGAATTTATACTGTACATTCTTTTTCTTAATTATGCAATAGATAAAGTTGCAT

Ace file of the UniGene sp_v3.0_unigene3406

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein kinase family protein [Arabidopsis thaliana] gb\|AEE79818.1\| protein kinase family protein [Arabidopsis thaliana]	-	-	0.0	60%
FL-Next	sp=Serine/threonine-protein kinase At3g07070; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	49%
Sma3	Receptor serine-threonine protein kinase, putative	-	-	1.441e-24	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	5.272e-19	-

Source	Gene names
Sma3	673I14.2; AT4g02010; AT4g13190; At1g07870; At1g20650; At1g26150; At1g76370; At2g20300; At2g28590; At3g02810; At3g07070; At3g20530; At3g24790; At3g58690/T20N10_40; At4g02010; At4g13190; At5g02290; At5g02800; At5g15080; At5g15080/F2G14_200; At5g18610; B1130

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	protoderm histogenesis	GO:0010068	Biological Process	-
Sma3	cuticle development	GO:0042335	Biological Process	-
Sma3	shoot development	GO:0048367	Biological Process	-
Sma3	organ formation	GO:0048645	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	IQ motif, EF-hand binding site	IPR000048	-	-
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Myosin head, motor domain	IPR001609	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Dilute	IPR002710	-	-
Sma3	Myosin, N-terminal, SH3-like	IPR004009	-	-
Sma3	Zinc finger, C2H2	IPR007087	-	-
Sma3	Uncharacterised protein family UPF0197	IPR007915	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	EGF-like region, conserved site	IPR013032	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	ABC transporter, conserved site	IPR017871	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-
Sma3	Dil domain	IPR018444	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G58690.1	Protein kinase superfamily protein chr3:21709369-21711246 FORWARD LENGTH=400	60%
RefSeq	Arabidopsis thaliana	NP_191428.3	protein kinase family protein [Arabidopsis thaliana]	60%
RefSeq	Populus trichocarpa	XP_002320416.1	predicted protein, partial [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9SFT7

Fln msg: your sequence is longer than subject: 445 - 414

Fln protein: MTPGFESPAPSPYLGSEFADKGSHKAHAVTAIIAVVCSLVVLLIMLLGFCCYKRSNARRINRSFLKANCRRSPGQSSGSYASDLEKSSAEYTNPSVSSMRVISTTPEVQVFTYKQLRFATNNFSSANVIGNGGFGLVYRSVLLDGRVTAIKQLDRDGQQGEREFRVEVDLLSRLHSPYLLQLIGYCADQDHRLLVYEYMSNGSVQEHLYSDGSPGNPPLLDWGTRMKIALDGARGLEYLHDHITPPVIHRDFKASNILLDKNYNAKVSDFGLAKLGSEKLNGEISTRILGTTGYVAPEYALTGHLTTKSDVYSFGVVLLELLTGRVPVDMKRPPGQGILVSWALPYLTDREKVTQLVDPVLEGQYSKKELIQVAAIAAMCVQSEADYRPLMTDVVQSLIPLVKQHTGSRVTSSPKFRHHIVTIKSSSVDSGSSGTSLNSPRIMA*

Protein Length: 446

Fln nts: GATACATAATGTGTATATCCTTGCAAGCCATGTCATTTGTGCGCTGTGCAACAGAATACTGAATTTCGGTGATTAATGGTTTGTCAAAAGCCTGCAGCACCCACATGTCCTGTTGTAAAATTTACTCCTTGCATTTATGAATCATTGTTATTGGCTATAATACGTTTGGTTGGACCTCTCAATGCGTTGAATCCAAGTCTTCTCCTTGGGATAATATGCCCTCCAGCGCTAGACTCATCCATGGATTCTTTGTACCAGACTATATATATTTGGTATAAAACATGTCTTGTAGAGCTTCTACAACGGTCCTGTATTTGGATTTCAAATTGAAAACTAGGTGGGTTTGTCACAAGAACTGGCCATGGTAACAATATAATCTTGAGAGATATTGCA_-_ATGACTCCTGGATTTGAGTCTCCTGCACCATCTCCATATTTGGGTTCTGAGTTTGCAGACAAAGGATCTCACAAAGCCCATGCAGTGACTGCAATAATAGCTGTTGTTTGCAGTTTGGTTGTCCTGTTAATAATGTTGCTTGGATTCTGCTGCTACAAACGTTCAAATGCCCGGAGGATTAATAGATCCTTCCTTAAAGCCAATTGTAGGAGGAGTCCCGGACAGTCCAGTGGTTCCTATGCTTCAGATCTGGAGAAAAGTTCAGCAGAGTACACGAATCCTTCGGTTTCTTCCATGCGGGTCATCTCAACGACTCCGGAAGTTCAGGTTTTCACATATAAACAGCTTCGATTTGCCACAAACAACTTCAGCTCTGCCAATGTGATTGGAAATGGGGGCTTTGGTTTGGTGTATAGGAGTGTCCTGCTTGATGGCAGAGTGACAGCCATCAAACAGCTTGACAGAGATGGCCAACAAGGAGAACGTGAATTCAGAGTTGAGGTGGACCTTCTAAGCCGCCTGCATTCACCATATCTGCTTCAGCTGATTGGTTACTGTGCGGATCAAGACCACCGTCTTCTTGTGTATGAGTATATGTCCAATGGGAGTGTGCAGGAGCACCTTTATTCTGATGGTTCACCAGGCAATCCACCGTTGTTAGATTGGGGAACAAGAATGAAAATAGCTCTGGATGGGGCTAGAGGCCTTGAATACCTTCATGACCATATTACTCCACCAGTGATACACCGGGATTTTAAGGCCAGCAACATCCTACTTGACAAAAATTACAATGCCAAAGTGTCTGATTTTGGGCTGGCAAAGCTTGGTTCTGAAAAATTGAATGGTGAAATCTCCACTCGAATTTTAGGAACTACGGGATATGTTGCCCCAGAGTATGCTTTGACAGGACACCTGACGACAAAATCAGATGTTTACAGCTTTGGTGTTGTGCTTTTAGAGCTTTTGACAGGCCGTGTTCCTGTAGACATGAAGAGGCCTCCTGGACAAGGCATACTCGTCTCTTGGGCTCTTCCATACCTCACTGACAGAGAGAAGGTTACACAGCTGGTCGATCCTGTTCTGGAAGGGCAGTACTCAAAGAAGGAACTAATACAGGTTGCAGCCATTGCAGCAATGTGTGTTCAATCAGAAGCAGATTATCGACCTCTGATGACTGATGTAGTTCAGTCACTGATTCCCCTTGTGAAACAGCATACTGGTTCCAGAGTGACAAGCTCTCCCAAATTCCGCCACCATATTGTCACTATCAAATCCTCTTCAGTTGATAGTGGAAGCAGTGGAACAAGCCTTAATAGCCCAAGAATAATGGCTTGA___ACCAAGGACTGGGAAAAATTTACAGACAGCTAAGCCACAACCATCTTATGTTTGGGGTGCCAGTATAGGCCTCCGAATACATATATAGGGCACTGATGAATCAGCCATCCAAGTGGGAAGAAGATATACACCTCTATCTTCAAAGGATTGGGGGTTGGTCCTCCCGAACTCACACAATTGAGAGATTTATCCCCATGCTCTTGATGAAACTAACCGAGAAAGGAAACCTTAGCACTATTTCCTTATCCTCTGTAGCCGTGGAGCCAACATATTGAACTCCCACACTAATCACAAGGCATGTTTGTTTCGAACTTGTCTTCATAACTGCTATACTGGATGGTGAACTAACTACCTGAGCAGCTGCTAGTGCATCTGCACAATAGGGGGTACTCTCCTATCTAAAGTTGGGTGGCTCGGAAAGAAAGCATTTTAAGTACAAATCAAGCTTCAGCTCTTTTGTATCATCCAGACTGTTGGGACGGTGACTCTATCCTACCCTGCATTAAATTGTAGACCTGTATATCTGAGTAACAATATTCTCATGTTGCTGTTGATATATAGGCTGTTTCAGTAATCTAGATTTAAAAATTTGCCATATCTCTGCCCTAACTTGAGGTGTAATTCACGTAGGAAAGTGTGTCTAGGTGGTTATTCTCGGTTGGCCATGCCATAAATCTATCTTGCTCTGATGAATTTATACTGTACATTCTTTTTCTTAATTATGCAATAGATAAAGTTGCAT

Fln Alignment:

Contig3406___FCCYKRSNARRINRSFLKANCRRSPGQSSGSYASDLEKSSAEYTNPSVSSM---RVISTTPEVQVFTYKQLRFATNNFSSANVIGNGGFGLVYRSVL-LDGRVTAIKQLDRDGQQGEREFRVEVDLLSRLHSPYLLQLIGYCADQDHRLLVYEYMSNGSVQEHLYSDGSPGNPPLLDWGTRMKIALDGARGLEYLHDHITPPVIHRDFKASNILLDKNYNAKVSDFGLAKLGSEKLNGEISTRILGTTGYVAPEYALTGHLTTKSDVYSFGVVLLELLTGRVPVDMKRPPGQGILVSWALPYLTDREKVTQLVDPVLEGQYSKKELIQVAAIAAMCVQSEADYRPLMTDVVQSL
Q9SFT7______________FSCFYFHEKKKVPRD--SDNSYRRNGEVTGRDNNKTHPENPKTVNEQNKNNDEDKEVTNNIAAQTFSFRELATATKNFRQECLIGEGGFGRVYKGKLEKTGMIVAVKQLDRNGLQGNKEFIVEVLMLSLLHHKHLVNLIGYCADGDQRLLVYEYMSRGSLEDHLL-DLTPDQIPL-DWDTRIRIALGAAMGLEYLHDKANPPVIYRDLKAANILLDGEFNAKLSDFGLAKLGPVGDKQHVSSRVMGTYGYCAPEYQRTGQLTTKSDVYSFGVVLLELITGRRVIDTTRPKDEQNLVTWAQPVFKEPSRFPELADPSLEGVFPEKALNQAVAVAAMCLQEEATVRPLMSDVVTAL

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
1146	88		11		0.923564
1196	12			87	0.992554
1280	10		90		0.90298
1282	10	90			0.90298
1283		90		10	0.90298
1354		16	83		0.994512
1355	16	83			0.994512
1366	20	80			0.995493
1368	20		80		0.995493
1370			80	20	0.995493
1753		75	25		0.996473
1754	75		25		0.996473
1793			75	25	0.996473
1939	57			42	1.0
2146	33		66		1.0
2325	16	83			0.994512
2412		80		20	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain