SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3382

Length: 3160 nt

UniGene Fasta

>sp_v3.0_unigene3382
AGTACGCGGGGGCCAATGCATGTGGGATTAGTTGACAGCGCTGTTGCTGGCTCTGTTGAGATTTCATTCATTGCATTCTGTGTGTTTTTGGCTTTCGGTTTCTGTTTTGTTGCTTGAGAGGTGCTGTGATTTGGGGTCGAAGAGAGGGCGCTCTGGTCTTGTTTGATTTGTTTCAGAAGCTTTGTTTTTTGGTTTCGATTGGTTTTGGTCTGAGGGGCTTTGTTGCAGAGGGCTTGTTGTGTGTGTGGGGGTGGAGTTGGGGAAGGTGATTTAGAATCAGAGAGCTTCTGCTGAGAGGGAAAAAGGTCAGGAGTTTCGGTTCGGGTGGGGTGGGAGAAAAAGGAGAGGGTACCGGTTAGTGGTAGATTAGAGGGGAAGCCGAGGCTGCGGCCTCGGCATTTTTTAAAGCCCCTTTGCCGCTCTGAGTCCTGACAGACGGTAAAAAGGCGGGAAGGGATGCCGCCCCTGGCTTGCTTAGGCGTTGTGGAGTCTCCCCATCATAACCCCCTCCGTAGCTATGGCTTGCCCGGGGAGGGCTCTCTTCCTGTTCCCCTGGTTCCGAAATTTCCCAACCCCTTCTTTTCCAATGGCGGCGTTGTAGGCGGTAATGCTGTGGCACCCGCTTGGTCCGTGGCCCATTCTTCTGCGTTGTATAGAGTTGATGGGTGGGGAGCTCCATATTTTGTGGTAAATGAGAATGGGAATGTGGCTGTTCGACCTCATGGTTCACAGACTCTTCCTTCGGAAGAAATCGATGTGATGAAGGTCGTTAAGAAGGTGGTTGGTTCCAAATCTTTGGGAGGCCTGGGCATGTCGGCGCCGCTTATTATTAGGTTTCCTGATGTGCTGAAGCACAGGCTGGAATCTCTGCAATCGGCCTTTGATTCTGCAATGCGCATGCAGTCGTATGAGTCTTATTTTCAGGGGGTTTATCCTGTTAAATGTAATCAAGATCGATATGTGGTTGAGAACATTGTGGAGTTTGGGAAGCCCTATGCATTCGGGCTTGAAGCCGGGTCGAAACCAGAGCTGTTGCTAGCTATGGCTTCCATGTGTAAAGCAAGCCCTAAGGCTTTGCTTGTCTGTAATGGATACAAAGATGAAGAATATATATCGCTGGCGCTTACTGCGAGACGCCTGAATTTTAACTGTGTTATTGTGCTGGAGCAAGAAGAAGAATTGGATTTGGTTCTCAGTGTGAGCCGCAAGTTATCTGTGAGACCTGTTATTGGGGTTCGAGCCAAGCTGAGGACCAAGCATGGCGGCCATTTCGGCGCTACATCCGGTGAAAAGGGCAAATTTGGGCTCACGAGTTTGGAAATTGTCGGCATCGTTCGGAAATTGCAGAAATTGGAGATGCTGGATTGTCTCCAGCTTCTTCATTTCCATATCGGGTCTCAGATCCCATGCGTTGAAGTTCTGAATGATGGTGTGAGCGAAGCGGCATATATATACTCCGAGCTCGCTAAGCTTGGCGCTAATATGAAGATCATTGACATTGGTGGAGGGCTTGGTATTGATTATGAAGGTACCAAGTCTTCTTGCTCTGATATGTCTGTTTCTTACAGTCTGGAAGAATACGCGGCCGCTGTGGTTAAGGCAGTCCGTGTGGCCTGTAATCAGAAGGGGGTAAACCATCCCATCATATGCAGTGAAAGCGGGAGGGCTCTGGTTTCTCACCATTCTCTTCTGATTTTTGACGTTGTCTCTGTGCATGACAAGAAAGACTCTGTATCTGCAGCTGTGGCTGGAATGAATCTGAACCCTCTGGTGGATGGTTTGCCTGAGGAATTAATGGGTGAATACCAGTCGGTAATGGCTTACACAGCCATGGGGGATTGCCGCAGCAGCCAAATCTGCGCAGAGCATATGAAAGCGAGGTGTCTGGATTTGTTCAAAGAAGGTCGCCTGGGGCTTGAACAGTTGGCCACTGTGGACGGGATGTGTGATCTCGTATCTTCTCCTGATGCCGAAGCTCCCGCCGTGTGTCACGTAAATCTGTCAATATTCAAGTCAATTCCCGACTTCTGGGCAATTGGGCAGCTGTTTCCAGTGATGCCTATCCACAGGCTCAACGAGCGGCCCACTGTGCGCGCCATTCTGTCGGACCTCACCTGTGACAGCGATGGCAAGGTGGACACGTTCATATCCGGTGACGACGGTGGTGGAGCCCGTGGCTTGCCTCTGCATTCTTTCGAGGGAAGAAGCGAGCCATACTATTTGGGAATGTTCCTCGGCGGGGCGTATCAGGAGGCACTGGGCGGGCTTCATAACTTGTTCGGTGTGCCCAACGTGGTCCATGTGGTGCAGAGCAGTGGACCTCATTGCTTTGCCATAACCAGAGCCCTGCCTGGTCAGACCTCAGCCGATGTTCTCCGTTTGATGATGCATGAACCCAACATGATGTTCAATTCTCTAAAGTGTCGCATTGAGGACTCCCTGCAACTGGATGACGACTGTGACCTGGACTCTGCAATCTCCAACCTTAACACCATTGCTTCTACGTTCAACTCTCTGCCATACCTCTCTTCCTCCTCATCCACTTCTTCCTTCTTCACTGACGACGATGAAGAATCTCATGACCATGATACCTGGTAGCTTTTATCTTCAGTTGATAAAAATCAACCATTCATTTTCTCTTTAAGTTTTTAGTTGGATTAGGTATACTTAGGTAACTGCTTTCTTCATCTGCAAAGGCCCGTTTACAGCATCTGCAGCAGCCATGTTTTGAACTTCATAATGGAACCAGAAAAAAAAAGTTATTTTAGATGTAAAGTGATTTCTTTGTGCTAATTGTATAGGCCATTTCTGTAGTTTTTGAATGGTGAGTTCTTTTTATTTGGTTGTATAACCCAGATTTAAAAGGTTAGTGGGCCTGCTCTCGACTGTTCTGATAAAAAGACAATCTTGTTTTTCGATCTCTCGTTTTCGAATGTGAATGTCTAACTGAAATGGACGTTTGACTGGCCACTTTTTGCGTCTTGATAAAGTGTAGCTTTGGAATATTCTGTTCTGACTGCTACAGTAAGATGAATTGAATTCATGAATTGAATGTCTGGATATCGATTTTTGTAATTAATGGAACAGTGTTAAATACGCAGTTTGATTGAATAATAATCTTAACGTTCAACACAAGTCAGCTCTCGGCCAATATGCTATG

Ace file of the UniGene sp_v3.0_unigene3382

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Arginine decarboxylase (Fragment) n=1 Tax=Pinus sylvestris RepID=Q71SB4_PINSY	-	-	0.0	85%
FL-Next	sp=Arginine decarboxylase; Pinus sylvestris (Scots pine).	-	-	0.0	96%

Source	ECs	Term	Type	e value	Identity
Sma3	Arginine decarboxylase.	EC:4.1.1.19	-	0.0	-

Source	KEGGs	Term	Type	e value	Identity
Sma3	Arginine and proline metabolism	00330		0.0	%
Sma3	Metabolic pathways	01100		0.0	%

Source	Gene names
Sma3	ADC;

Source	GOs	Term	Type	Identity
Sma3	arginine decarboxylase activity	GO:0008792	Molecular Function	-
Sma3	arginine catabolic process	GO:0006527	Biological Process	-
Sma3	spermidine biosynthetic process	GO:0008295	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Arginine decarboxylase	IPR002985	-	0.0	-
Sma3	Ornithine/DAP/Arg decarboxylase	IPR000183	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G16500.1	ADC1, ARGDC1, ARGDC, SPE1 arginine decarboxylase 1 chr2:7150796-7152904 REVERSE LENGTH=702	59%
RefSeq	Arabidopsis thaliana	NP_179243.1	arginine decarboxylase 1 [Arabidopsis thaliana]	59%
RefSeq	Populus trichocarpa	XP_002306141.1	predicted protein [Populus trichocarpa]	56%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: G8C844

Fln msg:

Fln protein: MPPLACLGVVESPHHNPLRSYGLPGEGSLPVPLVPKFPNPFFSNGGVVGGNAVAPAWSVAHSSALYRVDGWGAPYFVVNENGNVAVRPHGSQTLPSEEIDVMKVVKKVVGSKSLGGLGMSAPLIIRFPDVLKHRLESLQSAFDSAMRMQSYESYFQGVYPVKCNQDRYVVENIVEFGKPYAFGLEAGSKPELLLAMASMCKASPKALLVCNGYKDEEYISLALTARRLNFNCVIVLEQEEELDLVLSVSRKLSVRPVIGVRAKLRTKHGGHFGATSGEKGKFGLTSLEIVGIVRKLQKLEMLDCLQLLHFHIGSQIPCVEVLNDGVSEAAYIYSELAKLGANMKIIDIGGGLGIDYEGTKSSCSDMSVSYSLEEYAAAVVKAVRVACNQKGVNHPIICSESGRALVSHHSLLIFDVVSVHDKKDSVSAAVAGMNLNPLVDGLPEELMGEYQSVMAYTAMGDCRSSQICAEHMKARCLDLFKEGRLGLEQLATVDGMCDLVSSPDAEAPAVCHVNLSIFKSIPDFWAIGQLFPVMPIHRLNERPTVRAILSDLTCDSDGKVDTFISGDDGGGARGLPLHSFEGRSEPYYLGMFLGGAYQEALGGLHNLFGVPNVVHVVQSSGPHCFAITRALPGQTSADVLRLMMHEPNMMFNSLKCRIEDSLQLDDDCDLDSAISNLNTIASTFNSLPYLSSSSSTSSFFTDDDEESHDHDTW*

Protein Length: 715

Fln nts: AGTACGCGGGGGCCAATGCATGTGGGATTAGTTGACAGCGCTGTTGCTGGCTCTGTTGAGATTTCATTCATTGCATTCTGTGTGTTTTTGGCTTTCGGTTTCTGTTTTGTTGCTTGAGAGGTGCTGTGATTTGGGGTCGAAGAGAGGGCGCTCTGGTCTTGTTTGATTTGTTTCAGAAGCTTTGTTTTTTGGTTTCGATTGGTTTTGGTCTGAGGGGCTTTGTTGCAGAGGGCTTGTTGTGTGTGTGGGGGTGGAGTTGGGGAAGGTGATTTAGAATCAGAGAGCTTCTGCTGAGAGGGAAAAAGGTCAGGAGTTTCGGTTCGGGTGGGGTGGGAGAAAAAGGAGAGGGTACCGGTTAGTGGTAGATTAGAGGGGAAGCCGAGGCTGCGGCCTCGGCATTTTTTAAAGCCCCTTTGCCGCTCTGAGTCCTGACAGACGGTAAAAAGGCGGGAAGGG_-_ATGCCGCCCCTGGCTTGCTTAGGCGTTGTGGAGTCTCCCCATCATAACCCCCTCCGTAGCTATGGCTTGCCCGGGGAGGGCTCTCTTCCTGTTCCCCTGGTTCCGAAATTTCCCAACCCCTTCTTTTCCAATGGCGGCGTTGTAGGCGGTAATGCTGTGGCACCCGCTTGGTCCGTGGCCCATTCTTCTGCGTTGTATAGAGTTGATGGGTGGGGAGCTCCATATTTTGTGGTAAATGAGAATGGGAATGTGGCTGTTCGACCTCATGGTTCACAGACTCTTCCTTCGGAAGAAATCGATGTGATGAAGGTCGTTAAGAAGGTGGTTGGTTCCAAATCTTTGGGAGGCCTGGGCATGTCGGCGCCGCTTATTATTAGGTTTCCTGATGTGCTGAAGCACAGGCTGGAATCTCTGCAATCGGCCTTTGATTCTGCAATGCGCATGCAGTCGTATGAGTCTTATTTTCAGGGGGTTTATCCTGTTAAATGTAATCAAGATCGATATGTGGTTGAGAACATTGTGGAGTTTGGGAAGCCCTATGCATTCGGGCTTGAAGCCGGGTCGAAACCAGAGCTGTTGCTAGCTATGGCTTCCATGTGTAAAGCAAGCCCTAAGGCTTTGCTTGTCTGTAATGGATACAAAGATGAAGAATATATATCGCTGGCGCTTACTGCGAGACGCCTGAATTTTAACTGTGTTATTGTGCTGGAGCAAGAAGAAGAATTGGATTTGGTTCTCAGTGTGAGCCGCAAGTTATCTGTGAGACCTGTTATTGGGGTTCGAGCCAAGCTGAGGACCAAGCATGGCGGCCATTTCGGCGCTACATCCGGTGAAAAGGGCAAATTTGGGCTCACGAGTTTGGAAATTGTCGGCATCGTTCGGAAATTGCAGAAATTGGAGATGCTGGATTGTCTCCAGCTTCTTCATTTCCATATCGGGTCTCAGATCCCATGCGTTGAAGTTCTGAATGATGGTGTGAGCGAAGCGGCATATATATACTCCGAGCTCGCTAAGCTTGGCGCTAATATGAAGATCATTGACATTGGTGGAGGGCTTGGTATTGATTATGAAGGTACCAAGTCTTCTTGCTCTGATATGTCTGTTTCTTACAGTCTGGAAGAATACGCGGCCGCTGTGGTTAAGGCAGTCCGTGTGGCCTGTAATCAGAAGGGGGTAAACCATCCCATCATATGCAGTGAAAGCGGGAGGGCTCTGGTTTCTCACCATTCTCTTCTGATTTTTGACGTTGTCTCTGTGCATGACAAGAAAGACTCTGTATCTGCAGCTGTGGCTGGAATGAATCTGAACCCTCTGGTGGATGGTTTGCCTGAGGAATTAATGGGTGAATACCAGTCGGTAATGGCTTACACAGCCATGGGGGATTGCCGCAGCAGCCAAATCTGCGCAGAGCATATGAAAGCGAGGTGTCTGGATTTGTTCAAAGAAGGTCGCCTGGGGCTTGAACAGTTGGCCACTGTGGACGGGATGTGTGATCTCGTATCTTCTCCTGATGCCGAAGCTCCCGCCGTGTGTCACGTAAATCTGTCAATATTCAAGTCAATTCCCGACTTCTGGGCAATTGGGCAGCTGTTTCCAGTGATGCCTATCCACAGGCTCAACGAGCGGCCCACTGTGCGCGCCATTCTGTCGGACCTCACCTGTGACAGCGATGGCAAGGTGGACACGTTCATATCCGGTGACGACGGTGGTGGAGCCCGTGGCTTGCCTCTGCATTCTTTCGAGGGAAGAAGCGAGCCATACTATTTGGGAATGTTCCTCGGCGGGGCGTATCAGGAGGCACTGGGCGGGCTTCATAACTTGTTCGGTGTGCCCAACGTGGTCCATGTGGTGCAGAGCAGTGGACCTCATTGCTTTGCCATAACCAGAGCCCTGCCTGGTCAGACCTCAGCCGATGTTCTCCGTTTGATGATGCATGAACCCAACATGATGTTCAATTCTCTAAAGTGTCGCATTGAGGACTCCCTGCAACTGGATGACGACTGTGACCTGGACTCTGCAATCTCCAACCTTAACACCATTGCTTCTACGTTCAACTCTCTGCCATACCTCTCTTCCTCCTCATCCACTTCTTCCTTCTTCACTGACGACGATGAAGAATCTCATGACCATGATACCTGGTAG___CTTTTATCTTCAGTTGATAAAAATCAACCATTCATTTTCTCTTTAAGTTTTTAGTTGGATTAGGTATACTTAGGTAACTGCTTTCTTCATCTGCAAAGGCCCGTTTACAGCATCTGCAGCAGCCATGTTTTGAACTTCATAATGGAACCAGAAAAAAAAAGTTATTTTAGATGTAAAGTGATTTCTTTGTGCTAATTGTATAGGCCATTTCTGTAGTTTTTGAATGGTGAGTTCTTTTTATTTGGTTGTATAACCCAGATTTAAAAGGTTAGTGGGCCTGCTCTCGACTGTTCTGATAAAAAGACAATCTTGTTTTTCGATCTCTCGTTTTCGAATGTGAATGTCTAACTGAAATGGACGTTTGACTGGCCACTTTTTGCGTCTTGATAAAGTGTAGCTTTGGAATATTCTGTTCTGACTGCTACAGTAAGATGAATTGAATTCATGAATTGAATGTCTGGATATCGATTTTTGTAATTAATGGAACAGTGTTAAATACGCAGTTTGATTGAATAATAATCTTAACGTTCAACACAAGTCAGCTCTCGGCCAATATGCTATG

Fln Alignment:

Contig3382___MPPLACLGVVESPHHNPLRSYGLPGEGSLPVPLVPKFPNPFFSXXXXXXXXXXXPAWSVAHSSALYRVDGWGAPYFVVNENGNVAVRPHGSQTLPSEEIDVMXXXXXXXXXXXXXXXXMSAPLIIRFPDVLKHRLESLQSAFDSAMRMQSYESYFQGVYPVKCNQDRYVVENIVEFGKPYAFGLEAGSKPELLLAMASMCKASPKALLVCNGYKDEEYISLALTARRLNFNCXXXXXXXXXXXXXXXXSRKLSVRPVIGVRAKLRTKHGGHFGATSGEKGKFGLTSLEIVGIVRKLQKLEMLDCLQLLHFHIGSQIPCVEVLNDGVSEAAYIYSELAKLGANMKXXXXXXXXXXXYEGTKSSCSDMSVSYSLEEYXXXXXXXXXXXCNQKGVNHPIICSESGRALVSHHSLLIFXXXXXXXXXXXXXAAVAGMNLNPLVDGLPEELMGEYQSVMAYTAMGDCRSSQICAEHMKARCLDLFKEGRLGLEQLATVDGMCDLVSSPDAEAPAVCHVNLSIFKSIPDFWAIGQLFPVMPIHRLNERPTVRAILSDLTCDSDGKVDTFISGDDGGGARGLPLHSFEGRSEPYYLGMFLGGAYQEALGGLHNLFGVPNVVHVVQSSGPHCFAITRALPGQTSADVLRLMMHEPNMMFNSLKCRIEXXXXXXXXXXXXXAISNLNTIASTFNSLPYL
G8C844______________MPPLACLGVVESPHHNPLRGYGLPGEGSLPVPLVPKFPSPFFSNGGGVGANAVAPAWSVAHSSALYRVEGWGAPYFVVNENGNVAVRPHGSQTLPSEEIDVMKVVKKVVGSKSLGGLGMSAPLIIRFPDVLKHRLESLQSAFDSAMRMQSYESYFQGVYPVKCNQDRYVVENIVEFGKPYAFGLEAGSKPELLLAMASMCKASPKALLVCNGYKDEEYISLALTARRPNFNCVIVLEQEEELDLVLNVSRKLSVRPVIGVRAKLRTKHGGHFGATSGEKGKFGLTSLEIVGIVRKLQKLGMLDCLQLLHFHIGSQIPCVEVLNDGVSEAAYIYSELAKLGANMKIIDIGGGLGIDYEGTKSSCSDMSVSYSLDEYAAAVVKAVRVACSQKGVKHPIICSESGRALVSHHSLLIFDVVSVHEKKDSVSAAVAGMNLNPLVDGLPEELMGEYQSVMAYTAMGDCRSSQICAEHMKARCLDLFKEGRLGLEQLATVDGMCDLVSSPAADTPAVCHVNLSIFKSIPDFWAIGQLFPVMPIHRLNERPTVRAILSDLTCDSDGKVDTFISGDDGGGSRGLPLHPFEGRSEPYYLGMFLGGAYQEALGGLHNLFGVPNVVHVVQSSGPHCFAITRALPGQTSADVLRLMMHEPNMMFTSLKCRIEDSLQLAGDCDVESAISNLNTIASTFNSLPYL

SNPs (tot: 8)

Position	A %	C %	G %	T %	Probability
610		75		25	0.996473
631		50		50	1.0
656	80		20		0.995493
658	80		20		0.995493
691	28		71		1.0
805		33	66		1.0
853	16		83		0.994512
3032			60	40	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain