SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3373

Length: 1836 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene3373

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	cysteine desulfurase 1 [Arabidopsis thaliana] sp\|O49543.1\|NFS1_ARATH RecName: Full=Cysteine desulfurase 1, mitochondrial; AltName: Full=Protein AtMtNifS; Flags: Precursor gb\|AAK00758.1\|AF229854_1 cysteine desulfurase [Arabidopsis thaliana] emb\|CAA16686.1\|	-	-	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	94%
Sma3	Chromosome undetermined scaffold_310, whole genome shotgun sequence	-	-	-

Source	Gene names
Sma3	GSVIVT00011471001;

Source	GOs	Term	Type	Identity
Sma3	cysteine desulfurase activity	GO:0031071	Molecular Function	-
Sma3	pyridoxal phosphate binding	GO:0030170	Molecular Function	-
Sma3	cysteine metabolic process	GO:0006534	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Aminotransferase, class V/Cysteine desulfurase	IPR000192	-	-
Sma3	Cysteine desulfurase	IPR010240	-	-
Sma3	Cysteine desulfurase, NifS	IPR016454	-	-
Sma3	Pyridoxal phosphate-dependent transferase, major region, subdomain 1	IPR015421	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G65720.1	ATNIFS1, NIFS1, NFS1, ATNFS1 nitrogen fixation S (NIFS)-like 1 chr5:26296349-26297710 FORWARD LENGTH=453	75%
RefSeq	Arabidopsis thaliana	NP_201373.1	cysteine desulfurase 1 [Arabidopsis thaliana]	75%
RefSeq	Populus trichocarpa	XP_002310363.1	predicted protein [Populus trichocarpa]	80%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AA74

Fln msg:

Fln protein: MASKLLSVASRRAARTLTSGSPAARSLVNGHTAASFSTAAARAEEETVEETVEGITMKGVKIAGRPLYLDMQATSPVDPRVLDTMLPYYMYQYGNPHSRTHLFGWESDRAVEKAREQVAALIGASPKEIIFTSGATESNNISVKGVMHFFKDKKRHVITTQTEHKCVLDSCRHLQQEGFDVTYLPVKKDGLIDIDELRAAIRPDTGLVSVMTVHNEIGVIQPIAEIGEICRQNKIFLHTDAAQAAGKIPVNVDEMKVDLMSLSGHKMYGPKGIGALYMRRRPRVRVEPQMNGGGQERGIRSGTVATPLAVGMGAACELAMKEMTYDQRHVSALQERLLSGIKAQLDGVEINGSAERRYAGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVEEDMAHTSIRFGIGRFTTPQEIDRTIKLTVDQVQKLREMSPLWEMVKEGIDIKNIQWSQH*

Protein Length: 467

Fln nts: GCCCTACATTATAAAGGAAACCTCACAAATACATTTTGTTGCAGCAGCACTGTTCAAACACCAACTGTAATCTTCGAACCCCGACACTTCATATTTTCAGACTACAGACTTCGGCAGCTCGGCA_-_ATGGCGTCGAAGCTCCTATCCGTGGCGTCAAGAAGGGCCGCCAGAACTCTCACCAGTGGCAGCCCGGCCGCCAGATCTCTTGTCAATGGCCACACGGCTGCCTCTTTCTCAACGGCGGCAGCGAGAGCAGAAGAAGAAACGGTGGAGGAAACTGTGGAAGGAATCACAATGAAGGGCGTCAAGATAGCAGGCCGGCCCCTGTATCTCGACATGCAGGCAACATCCCCAGTCGATCCTAGGGTTCTGGACACCATGCTGCCGTATTACATGTACCAATACGGAAACCCTCATTCTCGAACCCATCTCTTCGGCTGGGAATCCGATAGAGCCGTGGAAAAGGCCAGAGAGCAGGTGGCCGCCCTTATCGGCGCGAGCCCTAAAGAAATAATCTTCACCTCCGGTGCCACTGAATCGAACAACATATCCGTCAAGGGTGTGATGCATTTCTTCAAAGACAAGAAAAGACACGTCATCACTACGCAGACGGAGCACAAGTGCGTCCTGGACTCATGCCGACACTTGCAGCAGGAGGGTTTCGATGTCACCTACTTACCCGTGAAAAAAGACGGCCTCATAGACATCGACGAGCTGAGGGCCGCCATCAGGCCCGACACAGGTTTGGTCTCTGTCATGACTGTTCATAACGAAATTGGTGTGATTCAGCCTATTGCAGAAATAGGTGAAATATGTAGGCAAAACAAAATTTTCCTTCACACTGATGCGGCTCAGGCCGCTGGTAAAATTCCTGTCAATGTCGATGAGATGAAAGTGGATTTGATGTCATTGAGTGGGCACAAAATGTATGGGCCTAAGGGAATTGGGGCTCTGTATATGCGCCGCAGGCCCAGGGTTCGAGTCGAGCCGCAAATGAACGGCGGAGGGCAGGAGAGGGGGATCAGAAGTGGCACAGTAGCGACGCCGTTGGCTGTCGGCATGGGCGCTGCCTGTGAGTTGGCGATGAAAGAGATGACTTATGACCAGAGGCATGTATCGGCGCTGCAAGAACGTTTGTTAAGTGGGATTAAGGCGCAGCTTGATGGTGTTGAGATCAATGGGAGCGCGGAGCGTCGGTATGCGGGGAATCTCAATCTGTCTTTTGCTTATGTAGAGGGGGAGAGCCTTCTCATGGGTCTCAAGGAGGTTGCTGTCTCGAGCGGCAGCGCGTGCACGAGTGCCAGTCTGGAGCCCTCTTATGTTTTGAGGGCTTTGGGGGTTGAAGAAGACATGGCTCATACTTCTATTAGATTTGGGATTGGAAGGTTCACCACGCCACAAGAGATCGATAGAACCATTAAGCTTACTGTTGATCAGGTTCAGAAGCTGAGAGAGATGAGTCCGTTGTGGGAAATGGTGAAAGAAGGAATTGATATAAAAAACATCCAATGGTCGCAGCATTAG___AATGGCTTTGTATTTACATGATCAAAAGGGCATATTTGCAACCATTGATTAATTCTCCATTATAAATGCTCTCCAGTTTGTAATATTCAAAACTCGACATATCGGTGGGTCACCTTTAACGTCCTTACAGATGCCAAGTTGTACACTCATCAAGCAAGTTTGATCTAGACAAGTATAGCCCCGCTGAGTTTAATGTATTTGTATAATCTTTGGTTCATATGTAAAATATGTTGTTTAATAGCGTGTCGGATTTTCAAGTCCAACTAAGCACTGTTTGGTATTGAGAAACTATAGAAATTATATATCTTTGTTCA

Fln Alignment:

Contig3373___MASKLLSVASRRAARTLTSGSPAARSLVNGHXXXXXXXXXXXXXXXXXXXXXXGITMKGVKIAGRPLYLDMQATSPVDPRVLDTMLPYYMYQYGNPHSRTHLFGWESDRAVEKAREQVAALIGASPKEIIFTSGATESNNISVKGVMHFFKDKKRHVITTQTEHKCVLDSCRHLQQEGFDVTYLPVKKDGLIDIDELRAAIRPDTGLVSVMTVHNEIGVIQPIAEIGEICRQNKIFLHTDAAQAAGKIPVNVDEMKVDLMSLSGHKMYGPKGIGALYMRRRPRVRVEPQMNGGGQERGIRSGTVATPLAVGMGAACELAMKEMTYDQRHVSALQERLLSGIKAQLDGVEINGSAERRYAGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVEEDMAHTSIRFGIGRFTTPQEIDRTIKLTVDQVQKLREMSPLWEMVKEGIDIKNIQWSQH
D5AA74______________MASKLLSMASRRAARTL----------VNGRLAASFSTAAARAVEETVEETVEGITMKGVKIAGRPLYLDMQATSPVDPRVLDAMMPFYMYQYGNPHSRTHLFGWESDTAVEKAREQVASLIGASPKEIIFTSGATESNNISIKGVMHFFKDKKRHVITTQTEHKCVLDSCRHLQQEGFEVTYLPVKKDGLIDIDELKAAIRPDTGLVSVMTVHNEIGVIQPIEEIGEICRQNKIFLHTDAAQAAGKIPVNVDEMKVDLMSLSGHKIYGPKGIGALYMRRRPRVRVEPQMNGGGQERGIRSGTVPTPLAVGMGAACELAMKEMAYDQRHVSALQERLLSGIKGQLDGVEINGSAERRYAGNLNLSFAYVEGESLLMGLKEVAVSSGSACTSASLEPSYVLRALGVEEDMAHTSIRFGIGRFTTPQEIDRTIKLTVDQVQKLREMSPLWEMVKEGIDIKNIQWSQH

SNPs (tot: 52)

Position	A %	C %	G %	T %	Probability
67		33	66		0.997452
79		66		33	0.997452
93	66			33	0.997452
104	66	33			0.997452
115		66		33	1.0
143	33			66	1.0
145	33	66			1.0
146	33		66		1.0
162	14	85			0.993533
163	14	85			0.993533
164			85	14	0.993533
165		85	14		0.993533
166		85		14	0.993533
238			85	14	0.993533
343	75	25			0.996473
352	75		25		0.996473
374		75		25	0.996473
376	25	75			0.996473
536	66		33		0.997452
614	20		80		0.995493
641	80		20		0.995493
659	12			87	0.992554
660	12			87	0.992554
662		87	12		0.992554
663			87	12	0.992554
665			12	87	0.992554
677	87		12		0.992554
701	88	11			0.923564
737		88	11		0.923564
782	11		88		0.923564
788		11	88		0.923564
789	11	88			0.923564
790		88		11	0.923564
791		11		88	0.923564
796	12	87			0.992554
813		14		85	0.993533
814	14		85		0.993533
816	85			14	0.993533
834		80		20	0.995493
836		20		80	0.995493
851		20		80	0.995493
923	40		60		1.0
924	60	40			1.0
926			40	60	1.0
1095	75		25		0.996473
1109			75	25	0.996473
1127	75		25		0.996473
1130	75		25		0.996473
1133	25			75	0.996473
1139	75		25		0.996473
1150	50	25	25		0.995533
1196			66	33	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain