SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3366

Length: 1708 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene3366 (antisense)

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	metacaspase 1 [Arabidopsis thaliana] sp\|Q7XJE6.1\|MCA1_ARATH RecName: Full=Metacaspase-1; Short=AtMC1; Short=AtMCP1b; AltName: Full=Protein LSD ONE LIKE 3 gb\|AAP84706.1\| metacaspase 1 [Arabidopsis thaliana] gb\|AAP44514.1\| metacaspase 1 [Arabidopsis thalian	-	-	68%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	86%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase C14, caspase catalytic	IPR011600	-	0.0	-
Sma3	Zinc finger, LSD1-type	IPR005735	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G02170.1	LOL3, ATMCPB1, MCP1B, ATMC1, MC1 metacaspase 1 chr1:411883-413426 FORWARD LENGTH=367	72%
RefSeq	Arabidopsis thaliana	NP_171719.2	metacaspase 1 [Arabidopsis thaliana]	72%
RefSeq	Populus trichocarpa	XP_002327020.1	predicted protein [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLS5

Fln msg:

Fln protein: MAMPMPLLVNCTGCQTPLQLPPGANSIRCVLCGTVSHIAASRGSAPPQGYQQHHYQPSAPPASAASPQRYSPAPPPSHGRKKAVICGISYKYSRHELKGCLNDANCMKYLLINKFKFPEASILMLNEEQRDPLRIPTKHNMRMALFWLVQGCQPGDSLVFHYSGHGSQQRNLNGEEVDGYDETLLPLDFETQGMIVDDEINATIVRPLPRGVRLHAIIDACHSGTVLDLPFLCRLNRSGQYVWEDHRPRSGTWKGTNGGEAISFSGCDDNQTSADTSALSRITSTGAMTYCFIQAIEKGAGTTYGSLLNSMRNTIRETGAGTGGGPVTSLITMLLTGGSYGGGLTQEPQLTSTEPFEIHSKPFYL*

Protein Length: 367

Fln nts: ATGGGGTGCTATGAGTTTACAAGAACGGAAGCGGCTACGATCGGCCGGCGAAGTTTCGAAACCGTGGGCGAAGTTTCGAAACCGCGGGGACCCTGAATTGACAATAAGAAGCGGGCGATCTCGATCGCGAAGGCATACAGACATCATTA_-_ATGGCGATGCCGATGCCATTGCTCGTGAATTGCACTGGCTGTCAGACGCCGCTGCAGCTTCCGCCGGGGGCGAATTCCATCCGCTGTGTTCTGTGTGGGACGGTCAGTCATATCGCAGCATCCCGCGGCAGTGCTCCGCCTCAAGGTTACCAGCAACACCACTACCAGCCATCGGCTCCTCCCGCTTCCGCGGCCAGTCCCCAACGCTATTCGCCTGCGCCGCCCCCTTCCCACGGCAGGAAGAAGGCGGTTATCTGCGGCATTTCTTACAAATACTCCCGGCATGAATTGAAGGGCTGTCTGAACGATGCCAACTGTATGAAGTACTTGTTAATCAATAAGTTCAAATTCCCAGAAGCCAGTATTCTCATGCTCAATGAAGAGCAAAGAGATCCTCTTAGAATACCAACAAAGCACAATATGCGAATGGCTTTATTTTGGCTTGTGCAAGGTTGTCAGCCTGGAGATTCATTAGTGTTCCATTATTCTGGACATGGTTCACAACAAAGGAACCTTAATGGAGAGGAAGTTGATGGATATGATGAAACTCTTCTTCCTCTTGACTTTGAAACACAGGGAATGATTGTAGATGATGAAATCAATGCAACAATTGTCAGGCCTCTTCCTCGTGGTGTTAGACTTCATGCAATAATTGATGCCTGCCATAGTGGCACAGTATTAGATTTGCCGTTTTTATGCCGACTAAACAGGAGTGGACAGTATGTTTGGGAGGATCACCGTCCACGATCAGGTACATGGAAAGGAACAAATGGTGGGGAAGCCATCTCCTTTAGTGGATGCGACGATAACCAAACTTCTGCAGATACTTCGGCTCTCTCAAGGATCACATCAACCGGAGCCATGACATATTGTTTTATTCAAGCAATTGAGAAGGGAGCTGGAACAACTTATGGAAGTCTATTGAATTCTATGCGTAATACTATCCGTGAAACAGGGGCAGGCACTGGTGGTGGTCCTGTCACTTCTCTCATCACTATGCTTTTAACTGGAGGCAGTTACGGTGGTGGGCTTACCCAGGAGCCTCAGCTGACATCTACAGAACCTTTTGAAATTCATTCTAAACCATTTTACCTTTGA___TGGTAAGCTGAATAAATGATGAAATGTAGCTTGTGATGCTTTTCTCTTTAGTGCTTTCTTCTATTGTTAAGTGAAGAGCAGGGGCCCATAGATAGAAGAAGCAACTCCATATTGTATGGAGATGTTTTTCATATTATTGCATTTTTTTCTTAATATAGCAATGGTTGGATTATTGTTCATATCAAGGTATGCTAGCTGCATGCCATGCAAATTCCATTGCGATAGTAATGGTATATTATTGAACAGTTCTAAGTTGTTTATATCATTAAAAATAACTACCTTTACTTCTCATAAAAGGAGGATTTCTATCAACAGAATGCAATGGCCATTTCTTTAAAAGAAACTGTTTTGTAGCAAGTTTATTGCCAGGGAACAGAAAAGGGCAGAGTTACGCTATTATCATAGGAGATAAAGCAAAGTTGTATGATAAATTTAATATCTATAAAGCTAAGATGCAATAG

Fln Alignment:

Contig3366___MAMPMPLLVNCTGCQTPLQLPPGANSIRCVLCGTVSHIAASRGSAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSHGRKKAVICGISYKYSRHELKGCLNDANCMKYLLINKFKFPEASILMLNEEQRDPLRIPTKHNMRMALFWLVQGCQPGDSLVFHYSGHGSQQRNLNGEEVDGYDETLLPLDFETQGMIVDDEINATIVRPLPRGVRLHAIIDACHSGTVLDLPFLCRLNRSGQYVWEDHRPRSGTWKGTNGGEAISFSGCDDNQTSADTSALSRITSTGAMTYCFIQAIEKGAGTTYGSLLNSMRNTIRETGAGTGGGPVTSLIXXXXXXXXXXXXXTQEPQLTSTEPFEIHSKPFYL
B8LLS5______________MAMPMPLLVTCSGCQTPLQLPAGAKSIRCALCRAVTHIAEPSGAAPPQGYHQHQPLAPPAPAASPQHYSPAPPPS--HGRKKAVVCGISYRYSRHELKGCLNDANCMKYLLINKFKFPEASIILLTEEQSDPLRIPTAHNMRMALYWLVQGCQPGDSLVFHYSGHGSQQRNNTGDEVDGFDETLLPLDFETQGMIVDDEINARIVRPLTRGVRLHAIIDACHSGTVLDLPFLCRLNRSGQYVWEDHRPRSGTWKGTSGGEAISFSGCDDNQTSADTSALSRITSTGAMTYCFIQAIEKGAGTTYGSLLNSMRNTIRETGAGTGGGPVTSLITMLLTGGSYSGGLTQEPQLTSTEPFEIHTKPFYL

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain