SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3363

Length: 2604 nt

UniGene Fasta

>sp_v3.0_unigene3363
CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGATGACAGAATTTGTCTTTTTACCACCTGTACTGAACAGAATCTGTACCGAACAGAGGGCCATCATTTAAAATTCAAGAGTGCCATGTGACGCGGATAACCATCGCAGAAAGTTGAAATTGGAAGTCGATTTCAGCTTGCGGATGCCACGATTATCCGAATCATTGTTTGTGCAAGGAACTGTTCCGTAACGAATTTATCCCCTGGCCCTCTCCCCAACTGCGTTGGTTGGAGTGAAGATTGGATTTTGTTGACGACTTTGTAAATTTGATCGAAATAGCTGAAGCATTTACACATTATCATCATCAACAAAGCGCTATATATATTGGTTTTCTTCGTTTCAACTTCTCTCACGCTTTATGTGTGAGCAGATCGAATCGAATCTCATCTGTAGCTAGCCCTCACCTGTAAGAAAATATGCATCGGTTTGTTGGAACCCGACTCTTAAGCCGACAAGCGAAACGCGTGTTTACCGGAGATTGCAAAGGCCACGCATTCAGCAACAGGGATTCTCATTCACTCGCTTTTCGCACTTTGGATGCTGAAGAAGTGTCAGGTTCACGAAGCACAGAAGTTCTCAATTTAGTGCAGGGAGAATGGAGAGGCACCTCAAGGTGGACCGATATTGTAGATCCTTTGAATGGACAGAAATTCATTGCTGTGCCGGATCCATCTGCAGATGAAATTAAACCGTTTGTTGAGAGCTTGCACTCATGTCCCAAGTCTGGCTTGCATAACCCATTAAAAAATCCTGAGAGATATGTTATGTACGGAGATATTTCTGCAAGGGCTGCTGCTGCATTGAAACAACCTGAGGTGTCACACTTTTTTGCAAAATTGATACAACGTGTGTCCCCCAAGAGTTTTGCTCAGGCTCTCGGTGAGGTCAATGTTACACAAACGTTTTTGGAGAACTTTTCTGGTGACCAGGTCCGATTTTTGGCTCGATCATTTGCAGTACCGGGAAATCATCATGGACAGCAAAGCAGTGGCTTTCGATGGCCCTATGGTCCTGTGGCAATCATAACACCATTCAATTTTCCGTTGGAGATACCTCTCCTCCAGCTTATGGGTGCCCTCTACATGGGAAACAAGCCACTTTTAAAAGTTGATAGCAAGGTTAGCATAGTAATGGAGCAAATGTTAAGGCTTCTTCATGAGTGTGGAATGCCTCTTGGAGATGTAGATTTTGTCAACTGTGATGGTAGCACCATGAATAGGCTTTTGCTAGAGGGAGATCCACGCATGACTCTTTTCACCGGAAGTTCAAGGGTTGCTGAGAAACTTGCTGTTGATCTGAAAGGGCGTGTGAAATTAGAAGATGCAGGATTTGATTGGAAAATTCTTGGCCCTGATGTTCAAGAGGTTGATTATGTTGCATGGGTTTGCGACCAGGATGCTTATGCATGTAGTGGGCAAAAATGTTCTGCGCAATCAATTCTATTCGTTCATGAGAATTGGAACTCTGCCAATCTTGTACCCAAGTTGAAAGCTCTTGCTGAGAGAAGGAAATTAGAAGATTTAACAGTCGGCCCTGTTCTCACTGTGACAACGGAACACATGCTAGCACATGTGAAAAGGATACTTGAGATTCCAGGAGCAAAATTGCTGTTTGGTGGAGAGCCTTTGGAGAACCATAGTATCCCAGAAATCTATGGGGCCATGAAACCGACAGCCATTTTTGTACCTCTTGATGAATTATTGAAAGACACAAATTTTGATGTGGTGACAACTGAAATTTTTGGCCCCTTCCAGATTTTAACCAATTACAGGAAAGATCAACTTCACATGGTGCTGGATGCATGTGAACGAATGCATGCCCATTTAACAGCAGCAGTTGTTTCAAATGATATTGCATTTTTACAGGATGTTCTAGGAAGATCTGTAAATGGGACAACATATGCTGGTATCCGTGCACGAACAACAGGAGCTCCTCAGAATCACTGGTTTGGGCCAGCTGGAGATCCAAGAGGGGCAGGGATTGGCACACCAGAGGCAATCAAGTTGGTTTGGTCATGCCATAGAGAGATTATTTATGACGTTGGCCCTGTGCCAGATGAGTGGACTCTTCCAGCTTGCACATGATGAATTTTGCTCAATTGCAGATGATTCTTCAGGTTGTGATGTTAATTTATATGTGGACGGATGCTTTGAATGTCATGCATACCAGTCTTGACTCTATTAAAACATAATTCTGATTATTTATTACGTTGGCCCTGTGCCAGATGAGTGGACTCTTCCAGCTTACACATGATGAATTTTGCTTGATTACAGATGATTCTTCAGGTTGTGATGTTAATATATATTTGGAAGGATGATTTGAATGTCGTGCATACCAGTCTTGACTCTAATTAAAAAATAATTCTTCCTTTTCACTGGTCAGATATCTGCTTAACTGGATGGCATTATTCATAGCTGTTTGGTGTACTGGGCGCACCAATGAGTTAATTGTAACCAGAGGCAAATGTGATCTTTACTAACGTGTGTTAATAGTTTTTACAGGTTTTTGAGTAGTGTTGATGGTTGCACAGTTCATAGAGTGGAGTATGCTTTGTAAAACTGATGATAAT

Ace file of the UniGene sp_v3.0_unigene3363

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Probable aldehyde dehydrogenase n=1 Tax=Linum usitatissimum RepID=ALDH_LINUS	-	-	76%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	23%
Sma3	Putative aldehyde dehydrogenase MIS1	-	-	-

Source	Gene names
Sma3	mis1;

Source	GOs	Term	Type	e value	Identity
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	0.0	-
Sma3	metabolic process	GO:0008152	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Aldehyde dehydrogenase, conserved site	IPR016160	-	-
Sma3	Aldehyde dehydrogenase, N-terminal	IPR016162	-	-
Sma3	Aldehyde dehydrogenase domain	IPR015590	-	-
Sma3	Carbamoyl-phosphate synthetase, large subunit, ATP-binding	IPR005479	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G62530.1	ALDH12A1, ATP5CDH, P5CDH aldehyde dehydrogenase 12A1 chr5:25099768-25103159 REVERSE LENGTH=556	73%
RefSeq	Arabidopsis thaliana	NP_568955.1	delta-1-pyrroline-5-carboxylate dehydrogenase 12A1 [Arabidopsis thaliana]	73%
RefSeq	Populus trichocarpa	XP_002330119.1	predicted protein [Populus trichocarpa]	73%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LS13

Fln msg: your sequence is longer than subject: 556 - 511

Fln protein: MHRFVGTRLLSRQAKRVFTGDCKGHAFSNRDSHSLAFRTLDAEEVSGSRSTEVLNLVQGEWRGTSRWTDIVDPLNGQKFIAVPDPSADEIKPFVESLHSCPKSGLHNPLKNPERYVMYGDISARAAAALKQPEVSHFFAKLIQRVSPKSFAQALGEVNVTQTFLENFSGDQVRFLARSFAVPGNHHGQQSSGFRWPYGPVAIITPFNFPLEIPLLQLMGALYMGNKPLLKVDSKVSIVMEQMLRLLHECGMPLGDVDFVNCDGSTMNRLLLEGDPRMTLFTGSSRVAEKLAVDLKGRVKLEDAGFDWKILGPDVQEVDYVAWVCDQDAYACSGQKCSAQSILFVHENWNSANLVPKLKALAERRKLEDLTVGPVLTVTTEHMLAHVKRILEIPGAKLLFGGEPLENHSIPEIYGAMKPTAIFVPLDELLKDTNFDVVTTEIFGPFQILTNYRKDQLHMVLDACERMHAHLTAAVVSNDIAFLQDVLGRSVNGTTYAGIRARTTGAPQNHWFGPAGDPRGAGIGTPEAIKLVWSCHREIIYDVGPVPDEWTLPACT*

Protein Length: 557

Fln nts: CTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGATGACAGAATTTGTCTTTTTACCACCTGTACTGAACAGAATCTGTACCGAACAGAGGGCCATCATTTAAAATTCAAGAGTGCCATGTGACGCGGATAACCATCGCAGAAAGTTGAAATTGGAAGTCGATTTCAGCTTGCGGATGCCACGATTATCCGAATCATTGTTTGTGCAAGGAACTGTTCCGTAACGAATTTATCCCCTGGCCCTCTCCCCAACTGCGTTGGTTGGAGTGAAGATTGGATTTTGTTGACGACTTTGTAAATTTGATCGAAATAGCTGAAGCATTTACACATTATCATCATCAACAAAGCGCTATATATATTGGTTTTCTTCGTTTCAACTTCTCTCACGCTTTATGTGTGAGCAGATCGAATCGAATCTCATCTGTAGCTAGCCCTCACCTGTAAGAAAAT_-_ATGCATCGGTTTGTTGGAACCCGACTCTTAAGCCGACAAGCGAAACGCGTGTTTACCGGAGATTGCAAAGGCCACGCATTCAGCAACAGGGATTCTCATTCACTCGCTTTTCGCACTTTGGATGCTGAAGAAGTGTCAGGTTCACGAAGCACAGAAGTTCTCAATTTAGTGCAGGGAGAATGGAGAGGCACCTCAAGGTGGACCGATATTGTAGATCCTTTGAATGGACAGAAATTCATTGCTGTGCCGGATCCATCTGCAGATGAAATTAAACCGTTTGTTGAGAGCTTGCACTCATGTCCCAAGTCTGGCTTGCATAACCCATTAAAAAATCCTGAGAGATATGTTATGTACGGAGATATTTCTGCAAGGGCTGCTGCTGCATTGAAACAACCTGAGGTGTCACACTTTTTTGCAAAATTGATACAACGTGTGTCCCCCAAGAGTTTTGCTCAGGCTCTCGGTGAGGTCAATGTTACACAAACGTTTTTGGAGAACTTTTCTGGTGACCAGGTCCGATTTTTGGCTCGATCATTTGCAGTACCGGGAAATCATCATGGACAGCAAAGCAGTGGCTTTCGATGGCCCTATGGTCCTGTGGCAATCATAACACCATTCAATTTTCCGTTGGAGATACCTCTCCTCCAGCTTATGGGTGCCCTCTACATGGGAAACAAGCCACTTTTAAAAGTTGATAGCAAGGTTAGCATAGTAATGGAGCAAATGTTAAGGCTTCTTCATGAGTGTGGAATGCCTCTTGGAGATGTAGATTTTGTCAACTGTGATGGTAGCACCATGAATAGGCTTTTGCTAGAGGGAGATCCACGCATGACTCTTTTCACCGGAAGTTCAAGGGTTGCTGAGAAACTTGCTGTTGATCTGAAAGGGCGTGTGAAATTAGAAGATGCAGGATTTGATTGGAAAATTCTTGGCCCTGATGTTCAAGAGGTTGATTATGTTGCATGGGTTTGCGACCAGGATGCTTATGCATGTAGTGGGCAAAAATGTTCTGCGCAATCAATTCTATTCGTTCATGAGAATTGGAACTCTGCCAATCTTGTACCCAAGTTGAAAGCTCTTGCTGAGAGAAGGAAATTAGAAGATTTAACAGTCGGCCCTGTTCTCACTGTGACAACGGAACACATGCTAGCACATGTGAAAAGGATACTTGAGATTCCAGGAGCAAAATTGCTGTTTGGTGGAGAGCCTTTGGAGAACCATAGTATCCCAGAAATCTATGGGGCCATGAAACCGACAGCCATTTTTGTACCTCTTGATGAATTATTGAAAGACACAAATTTTGATGTGGTGACAACTGAAATTTTTGGCCCCTTCCAGATTTTAACCAATTACAGGAAAGATCAACTTCACATGGTGCTGGATGCATGTGAACGAATGCATGCCCATTTAACAGCAGCAGTTGTTTCAAATGATATTGCATTTTTACAGGATGTTCTAGGAAGATCTGTAAATGGGACAACATATGCTGGTATCCGTGCACGAACAACAGGAGCTCCTCAGAATCACTGGTTTGGGCCAGCTGGAGATCCAAGAGGGGCAGGGATTGGCACACCAGAGGCAATCAAGTTGGTTTGGTCATGCCATAGAGAGATTATTTATGACGTTGGCCCTGTGCCAGATGAGTGGACTCTTCCAGCTTGCACATGA___TGAATTTTGCTCAATTGCAGATGATTCTTCAGGTTGTGATGTTAATTTATATGTGGACGGATGCTTTGAATGTCATGCATACCAGTCTTGACTCTATTAAAACATAATTCTGATTATTTATTACGTTGGCCCTGTGCCAGATGAGTGGACTCTTCCAGCTTACACATGATGAATTTTGCTTGATTACAGATGATTCTTCAGGTTGTGATGTTAATATATATTTGGAAGGATGATTTGAATGTCGTGCATACCAGTCTTGACTCTAATTAAAAAATAATTCTTCCTTTTCACTGGTCAGATATCTGCTTAACTGGATGGCATTATTCATAGCTGTTTGGTGTACTGGGCGCACCAATGAGTTAATTGTAACCAGAGGCAAATGTGATCTTTACTAACGTGTGTTAATAGTTTTTACAGGTTTTTGAGTAGTGTTGATGGTTGCACAGTTCATAGAGTGGAGTATGCTTTGTAAAACTGATGATAAT

Fln Alignment:

Contig3363___GEWRGTSRWTDIVDPLNGQKFIAVPDPSADEIKPFVESLHSCPKSGLHNPLKNPERYVMYGDISARAAAALKQPEVSHFFAKLIQRVSPKSFAQALGEVNVTQTFLE--NFSGDQVRFLARSFAVPGNHHGQQSSGFRWPYGPVAIITPFNFPLEIPLLQLMGALYMGNKPLLKVDSKVSIVMEQMLRLLHEC----GMPLGDVDFVNCDGSTMNRLLLEGDPRMTL--FTGSSRVAE--KLAVDLK-GRVKLEDAGFDWKILGPDVQEVDYVAWVCDQDAYACSGQKCSAQSILFVHENWNSANLVPKLKALAERRKL-----EDLTVGPVLTVTTEHMLAHVKRILEIPGAKLLFGGEPLENHSIPEIYGAMKPTAIFVPLDELLKDTNFDVVTTEIFGPFQILTNYRKDQLHMVLDACERMHAHLTAAVVSNDIAFLQDVLGRSVNGTTYAGIRARTTGAPQNHWFG---PAGDPRGAG
B8LS13______________GIWKGSGNTVTSVNPSNNQPIATVVEASIEEYEDSLRACAEARKIWMQTPA--PKR----GEIVRQIGEALRSK--LDLLGRLVSLEMGKILAEGIGEV---QEFIDMCDYAVGLSRQLNGSI-IPSERPNHMMMEVWNPLGIVGVITAFNFPCAVLGWNACIALVCGNCVVWKGAPTTPLITIATTKLIAEVLERNGFP-GAIFTSICGGAEIGQAIAE-DGRIPLVSFTGSTKVGQIVQNAVNARFGKCLLELSGNNAIIVMEDADLAMVVRSVLFA-AVGTAGQRCTSCRRLLLHEKVYQ-HVIEQLTDAYKQVKLGDPLDKDTLLGPLHTRASKINFEKGIQVIKSQGGRILTGGSVIEHEG-----NFVQPTIV-----EISKDA--PVVKEELFGP--VLYVLKFQTLEEAIEINNSVSQGLSSSIFTRSPEAIFKWIGPCGSDCGIVNINIPTSGAEIGGAFGGEKATGGGREAG

SNPs (tot: 21)

Position	A %	C %	G %	T %	Probability
827	14		85		0.999981
828	14	85			0.999981
1127	66		16		0.988813
1151	85		14		0.993533
1687	16	83			0.999991
1688		16		83	0.999991
1691			83	16	0.999991
1755	88		11		0.923564
1766	88	11			0.923564
2029	20		79		1.0
2112	9		90		1.0
2113		86		13	1.0
2122	4			24	1.0
2132		84		15	1.0
2133	84		15		1.0
2137	15		84		1.0
2167	21			78	1.0
2173			78	21	1.0
2178	29	70			1.0
2184	35	64			1.0
2269	88		11		0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain