SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3351

Length: 2254 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene3351
ATGATTGTCCTGCTGCACGAATGGACGCTAAGAGAAGGAGGTGATCTGGAAAAAAATACCAGTCCAATATGAGAAAATTTGCAGTGGCGGCTATTTTACTGTGGAGCCCGTGATTTGAACCGCCGACGAATGTGCGTTTTAATAAAGCAGTACATGTCTGTGGACGAACTCAAATCCGCGACCGTCTTAGGGTTTTTTTTTCCCAATTTTGTTCTTTGTTCAGGTTTTTAAGCGGAAAGTTTCCGGGAAATTGAACTGGAAAAAAATTGTTCCTGAGCCGTTTGGAACTCACGACCTTCTTGGAGATGAATTTAGTCTAACCAGAGTGTTTCTTTCTTGCAAGCGCGTTTCCGGGAAATATACAGGAATTTTCTCTGCGAATTTTTAATTCCCGTGGCATCAGAAGTTCCGATTTGCCAGGTCTTTGAACTCGGAATTTCTCGGCTGTATGCTTTGGATGAGAATGGAAACCGCGATATCCTCACCTGATGCCTGCATGAATCCCTGCAGTTTGCTGGAAGAGACTCCGGCCATGGCCGCAAGGCGACGCCGGATGGAAATCCGGCGCCTGAAATTGATGTCTAATAGCGGAAATTTTTCTGATATGGTGAAAAAGCGCACTCGTGCACGAAACGGTCGGGTTTGCAGTAATTGTTTTGGCAGGGAGGGGGCTTCTTTGGCAGAGGAGGATGCCGAAAATTCATTGGCACTGGAAATTGAACTACAGTCGCATACTCTGTATCCCGCCAGAAGGCTGGTGAGGTCAGTGTCGACTCCTATTGGTTGGAATAGTGGGCTGCTTTGCACCTGCCGCGTGGAGAAATATTGGACGAGCGACGCCTCTGACAAACAAGACAGCATCAGCAGCACCCCTGTCAATGAGAAAAACAAATTTAACAGCAGCAGCAACAATAACAATAATAACTATAATAAGAACGACAGCATCAGTAATGTTGCAGCCGATTTAGAGCCTGTGGATCAAGATTCAACACAACAAGAGGCAATTACTGATAGTAAGCCTCAAAGAGATAAATCATCTTCAGAAGATGACAATAATAACAATAAGGACCTCCCTACCGTTACTACTCCTGCTGCTTCTGCAGGTAAATGTAACATTCCTGCTCCTCCCACACAGGGGTCTAAACAGCGTACAACTGAGCAGGGTGTTCCCTTAAACAGGCCGTTGAAGACCATAGGCAGGGCTAACAGTGAAAGCATCAGTTTGCTGTTGAAGGATCCATGTCCTCCGCATAGTACCATGTCTATAATTGGCAGAAGACGTGAAATGGAGGATGCTGTTTCGGCTGTGCCCTCGTTCTTTTCCATTCCGAAAGGTAGTTCTATTGCACTTCTAGACGGGTTCTGTGGATCAGGACCGCCGCCGCTGCCTACTGCTCTCCACTTCTTTGCTGTCTATGATGGCCATGGTGGATCTCAGGCTTCAGTATTCTGCAAGGACCGTTTCCATGAGGCTCTTGCTGAGGAGTTGAGAAATTCCTCTCCATTTTGCAGAGATTTAAACGATTGGAGTAAAGTGATGTCTACTTGCTTCACGAAAATAGATATGGCAGTGGGAGGGATGTGTCCAAATGGAAGCTGTGGGAGTGGGGATTCACAAAAGACTAGTGATTGCTGCCATGATCCAGTTGCACCAGAGAACGTGGGTTCAACAGCTGTTGTAGCCATTGTGAGCCCATCTCAACTTGTTATTGCAAACTGTGGAGATTCCAGAGCAGTCTTATCAAGGGGAGGCAAAGCTATTCCCCTTTCCAGTGACCATAAGCCCGAACGAGAGGACGAGTTGAACCGCATTGAAGCTGCTGGTGGACGTGTTATTTTTTGGAATGGGTATCGTGTTGGAGGTTTTCTTGCTATGTCAAGGGCCATAGGTGACCGATTCTTGAAACGGTATGTGATTTCTGAACCAGAAGTAACATGTACAGAGCGTACACATGAAGATGAATGCCTGATTTTAGCCAGTGATGGTCTATGGGATGTTTTGTCAAATGATGTTGTCTGTGAAGTTGCTCGAAAATGTCTGGCTGGTTATCGGCCGCATCGTTCAAAAGGTATTACTGAAGACACTCCCGTTGGTGCAGCAGCCGCTCTCCTTACAAAATTAGCCTTGGGAAAGGGAAGTGGAGATAATATTAGTGTAGTTGTAATCGATCTCAAAGAAAGAAGAAATAGAAACAGATGATAATTATTCTACTTTATATAAATATATCTATATATATGCATACATACATGATAC

Ace file of the UniGene sp_v3.0_unigene3351 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Protein phosphtase 2C n=1 Tax=Marchantia polymorpha RepID=D3W6X9_MARPO	-	-	0.0	55%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	90%
Sma3	Protein phosphatase 2C	-	-	4.661e-26	-

Source	ECs	Term	Type	e value	Identity
Sma3	Phosphoprotein phosphatase.	EC:3.1.3.16	-	1.95621e-42	-

Source	Gene names
Sma3	ABI1; ABI1B; ABI2; AHG1; AHG3; AIP1; AT1G72770; At1g07430; At1g17550; At1g72770; At2g29380; At3g11410; At4g26080; At5g51760; At5g57050; At5g59220; CHLREDRAFT_121320; F16P2.24; F1L3.32; F20B18.190; F22G5.22; F24K9.8; F28P22.4; GSVIVT00006743001; GSVIVT0000

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein serine/threonine phosphatase complex	GO:0008287	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	magnesium ion binding	GO:0000287	Molecular Function	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	protein serine/threonine phosphatase activity	GO:0004722	Molecular Function	-
Sma3	potassium channel activity	GO:0005267	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	manganese ion binding	GO:0030145	Molecular Function	-
Sma3	potassium ion binding	GO:0030955	Molecular Function	-
Sma3	protein dephosphorylation	GO:0006470	Biological Process	-
Sma3	potassium ion transport	GO:0006813	Biological Process	-
Sma3	response to osmotic stress	GO:0006970	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to cold	GO:0009409	Biological Process	-
Sma3	response to water deprivation	GO:0009414	Biological Process	-
Sma3	response to abscisic acid stimulus	GO:0009737	Biological Process	-
Sma3	abscisic acid mediated signaling pathway	GO:0009738	Biological Process	-
Sma3	negative regulation of abscisic acid mediated signaling pathway	GO:0009788	Biological Process	-
Sma3	regulation of stomatal movement	GO:0010119	Biological Process	-
Sma3	photoinhibition	GO:0010205	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C, manganese/magnesium aspartate binding site	IPR000222	-	-
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3		IPR014045	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G17550.1	HAB2 homology to ABI2 chr1:6034917-6036939 FORWARD LENGTH=511	50%
RefSeq	Arabidopsis thaliana	NP_173199.2	protein phosphatase 2C 7 [Arabidopsis thaliana]	50%
RefSeq	Populus trichocarpa	XP_002309484.1	predicted protein [Populus trichocarpa]	46%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8K0

Fln msg: your sequence is longer than subject: 584 - 533

Fln protein: MLWMRMETAISSPDACMNPCSLLEETPAMAARRRRMEIRRLKLMSNSGNFSDMVKKRTRARNGRVCSNCFGREGASLAEEDAENSLALEIELQSHTLYPARRLVRSVSTPIGWNSGLLCTCRVEKYWTSDASDKQDSISSTPVNEKNKFNSSSNNNNNNYNKNDSISNVAADLEPVDQDSTQQEAITDSKPQRDKSSSEDDNNNNKDLPTVTTPAASAGKCNIPAPPTQGSKQRTTEQGVPLNRPLKTIGRANSESISLLLKDPCPPHSTMSIIGRRREMEDAVSAVPSFFSIPKGSSIALLDGFCGSGPPPLPTALHFFAVYDGHGGSQASVFCKDRFHEALAEELRNSSPFCRDLNDWSKVMSTCFTKIDMAVGGMCPNGSCGSGDSQKTSDCCHDPVAPENVGSTAVVAIVSPSQLVIANCGDSRAVLSRGGKAIPLSSDHKPEREDELNRIEAAGGRVIFWNGYRVGGFLAMSRAIGDRFLKRYVISEPEVTCTERTHEDECLILASDGLWDVLSNDVVCEVARKCLAGYRPHRSKGITEDTPVGAAAALLTKLALGKGSGDNISVVVIDLKERRNRNR*

Protein Length: 585

Fln nts: ATGATTGTCCTGCTGCACGAATGGACGCTAAGAGAAGGAGGTGATCTGGAAAAAAATACCAGTCCAATATGAGAAAATTTGCAGTGGCGGCTATTTTACTGTGGAGCCCGTGATTTGAACCGCCGACGAATGTGCGTTTTAATAAAGCAGTACATGTCTGTGGACGAACTCAAATCCGCGACCGTCTTAGGGTTTTTTTTTCCCAATTTTGTTCTTTGTTCAGGTTTTTAAGCGGAAAGTTTCCGGGAAATTGAACTGGAAAAAAATTGTTCCTGAGCCGTTTGGAACTCACGACCTTCTTGGAGATGAATTTAGTCTAACCAGAGTGTTTCTTTCTTGCAAGCGCGTTTCCGGGAAATATACAGGAATTTTCTCTGCGAATTTTTAATTCCCGTGGCATCAGAAGTTCCGATTTGCCAGGTCTTTGAACTCGGAATTTCTCGGCTGT_-_ATGCTTTGGATGAGAATGGAAACCGCGATATCCTCACCTGATGCCTGCATGAATCCCTGCAGTTTGCTGGAAGAGACTCCGGCCATGGCCGCAAGGCGACGCCGGATGGAAATCCGGCGCCTGAAATTGATGTCTAATAGCGGAAATTTTTCTGATATGGTGAAAAAGCGCACTCGTGCACGAAACGGTCGGGTTTGCAGTAATTGTTTTGGCAGGGAGGGGGCTTCTTTGGCAGAGGAGGATGCCGAAAATTCATTGGCACTGGAAATTGAACTACAGTCGCATACTCTGTATCCCGCCAGAAGGCTGGTGAGGTCAGTGTCGACTCCTATTGGTTGGAATAGTGGGCTGCTTTGCACCTGCCGCGTGGAGAAATATTGGACGAGCGACGCCTCTGACAAACAAGACAGCATCAGCAGCACCCCTGTCAATGAGAAAAACAAATTTAACAGCAGCAGCAACAATAACAATAATAACTATAATAAGAACGACAGCATCAGTAATGTTGCAGCCGATTTAGAGCCTGTGGATCAAGATTCAACACAACAAGAGGCAATTACTGATAGTAAGCCTCAAAGAGATAAATCATCTTCAGAAGATGACAATAATAACAATAAGGACCTCCCTACCGTTACTACTCCTGCTGCTTCTGCAGGTAAATGTAACATTCCTGCTCCTCCCACACAGGGGTCTAAACAGCGTACAACTGAGCAGGGTGTTCCCTTAAACAGGCCGTTGAAGACCATAGGCAGGGCTAACAGTGAAAGCATCAGTTTGCTGTTGAAGGATCCATGTCCTCCGCATAGTACCATGTCTATAATTGGCAGAAGACGTGAAATGGAGGATGCTGTTTCGGCTGTGCCCTCGTTCTTTTCCATTCCGAAAGGTAGTTCTATTGCACTTCTAGACGGGTTCTGTGGATCAGGACCGCCGCCGCTGCCTACTGCTCTCCACTTCTTTGCTGTCTATGATGGCCATGGTGGATCTCAGGCTTCAGTATTCTGCAAGGACCGTTTCCATGAGGCTCTTGCTGAGGAGTTGAGAAATTCCTCTCCATTTTGCAGAGATTTAAACGATTGGAGTAAAGTGATGTCTACTTGCTTCACGAAAATAGATATGGCAGTGGGAGGGATGTGTCCAAATGGAAGCTGTGGGAGTGGGGATTCACAAAAGACTAGTGATTGCTGCCATGATCCAGTTGCACCAGAGAACGTGGGTTCAACAGCTGTTGTAGCCATTGTGAGCCCATCTCAACTTGTTATTGCAAACTGTGGAGATTCCAGAGCAGTCTTATCAAGGGGAGGCAAAGCTATTCCCCTTTCCAGTGACCATAAGCCCGAACGAGAGGACGAGTTGAACCGCATTGAAGCTGCTGGTGGACGTGTTATTTTTTGGAATGGGTATCGTGTTGGAGGTTTTCTTGCTATGTCAAGGGCCATAGGTGACCGATTCTTGAAACGGTATGTGATTTCTGAACCAGAAGTAACATGTACAGAGCGTACACATGAAGATGAATGCCTGATTTTAGCCAGTGATGGTCTATGGGATGTTTTGTCAAATGATGTTGTCTGTGAAGTTGCTCGAAAATGTCTGGCTGGTTATCGGCCGCATCGTTCAAAAGGTATTACTGAAGACACTCCCGTTGGTGCAGCAGCCGCTCTCCTTACAAAATTAGCCTTGGGAAAGGGAAGTGGAGATAATATTAGTGTAGTTGTAATCGATCTCAAAGAAAGAAGAAATAGAAACAGATGA___TAATTATTCTACTTTATATAAATATATCTATATATATGCATACATACATGATAC

Fln Alignment:

Contig3351___MVKKRTRARNGRVCSNCFGREGASLAEEDAENSLALEIELQSHTLYPARRLVRSVSTPIGWNSGLLCTCRVEKYWTSDASDKQDSISSTPVXXXXXXXXXXXXXXXXXXXXXXXXNVAADLEPVDQDSTQQEAITDSKPQRXXXXXXXXXXXXXD-LPTVTTPA-ASAGKCNIPAPPTQGSKQRTTEQGVPLNRPLKTIGRANSESISLLLKDPCPPHSTMSIIGRRREMEDAVSAVPSFFSIPKGSSIALLDGFCGSGPPPLPTALHFFAVYDGHGGSQASVFCKDRFHEALAEELRNSSPFCRDLNDWSKVMSTCFTKIDMAVGGMCPNGSCGSGDSQKTSDCCHDPVAPENVGSTAVVAIVSPSQLVIANCGDSRAVLSRGGKAIPLSSDHKPEREDELNRIEAAGGRVIFWNGYRVGGFLAMSRAIGDRFLKRYVISEPEVTCTERTHEDECLILASDGLWDVLSNDVVCEVARKCLAGYRPHRSKGITEDTPVXXXXXXXXXXXXXXXXGDNISVVVIDLKE
D5A8K0______________MLKKRTRTRNARVCSNCFGREGASLAEEDAENSLPMEIELQSHTLYPARRLVRSVSTPIGWNSGLLCTCRVEKYWTSEARDKQNSISSTSVNEKNKFNSSSNNNNNNSNKDDSIIKVAADAEPVDQGSTQQEATTDSKPQREKSSSEDENNNNKKESPSLPPPLPAAAGKSNVPAPATQGSKQRTTEQDIPLNRPLKGIGRANSESISFLLKDPCPPHSTMSIIGRRREMEDAVSAVPSFFSIPKASSIALLDGFPGFVQPPLSTALHFFAVYDGHGGSQASVFCKDRFHEALAEELRNSSPFCIDLNDWSRVMSTCFTKIDMAVGGMCPNGSCGSGDSQKSSDCCQDPIAPENVGSTAVVAIVSPSQLVIANCGDSRAVLSRGGKAIPLSSDHKPEREDELSRIEAAGGRVIFWNGYRVGGFLAMSRAIGDRFLKRYVISEPEVTCTERTHEDECLILASDGLWDVLSNDVVCEVARKCLAGYRPHRSKGITEDTPVGAAAALLTKLALGRGSGDNISVVVIDLKE

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
809	87		12		0.992554
812			87	12	0.992554
895		77		22	0.999999
949	88		11		0.923564
1043		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain