SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3346

Length: 2660 nt

UniGene Fasta

>sp_v3.0_unigene3346
TACTGGGAGTTGGGGTGGTGATTTTAGTGGTGTTGCTGTTGATCCTGTGGTACAATCACTTGAAGAGCAGCAGAACCAGCCCTTATGATCTGACCGCTGTCAGGCTTCAGAGATTCACATACCGTGAGCTCAAAGCTTCTACCCGTTCATTCAACTCGACTCACAGGCTTGGGAAGGGAGGATTCGGTGTTGTTTACAAAGGGGTTCTCAGGAATGGCAAGGAAATTGCAGTCAAGAGGTTGGATATCACTTCTCTGCAAGGCGAAAGAGAATTTCAGAATGAATTGTCGATCATTGGGGGGCTCAGGTCTCCTTTTGTGGTTTCTCTGTTGGGGTACTGTGCTGATAGGACGAGGAGACTGCTAGTGTATGAGCATATGCAGAACAGAAGCTTGCAGGAGGCTCTGTTTGAGAATGATTCGCCTTCGAAGTTGGATTGGGAAACCAGGTTTAAGATAATTCTGGACATTGCCCAAGCGCTGGCCTTTCTGCACCTTGAGTGTGATCCACCCATTATTCATGGCGATATAAAGCCCAGCAATGTTCTTCTGGATGCCCGTTTCAGTGCGAAACTAGCTGATTTTGGGCTGGCCAGACTTAAGTGCGATGCTGACTTTGGGCCTGAGCTATTTAGTCAGGACCTTGGGCGAAGCCAAGAGTTTCAATGCAGAAGTCAGGATCTGTGGAAGAGCCAGGATCTAGGTAAGAGCCAAGACCTTAACATAAGCCAGGATTTTAATATGAGCTATGATCTTTATAAAAACCAGGATGTTGGAAAGATGAACAGAGATAATGCAAATACTAAAACAGATGCTGTTGACTATGGGGAGGGGAGCATTGGGAAGCTCTCTGGTAGGAAGATGGTAAACATTATAGATGGAGATGGCCTGAGTCCAAGGTCTGTTGACAAGGAATCTGAGGTCGACTTCGCTCTGGCATTACAGTTGCAGCATCAAGCTTCTTCCTCTAGTAAAATTGAATATTTAAGTGATAATGCCCTGGTGCACGAGGTTGTCAATAGTGGGGATGAGGAAATTGGGTTACAGATGAAGGGAAAAGAGATTCTGACAGAGGGTGAGGATTGGTGCAAAAATTGCCCTTCGGATGCTGGAACCGATGATATCAGTAGCTTTGATAGGAGCAAGGAATTGAGAGCATCTCCCTCTGATTGCAAAGATTCGAAAAAGAAGCAGCCTTGGGGAAAGGATTGGTGGTGGAGACAAGATGGCAGTGGTGAGCTATGTGCTAAAGACTATGTGATGGAGTGGATTGGTAGTCAAATTAGGCCTTCCAGGAGTGGAAACTGGGATGATGAGAACAAGGTGGAGAAAGCAGAGACTGATGGAACCAAGACCCCGGAGGTCCATAAAGAACCCAGTGGAGAGCTGAGTCTTACTGAATCCATGCGAATAACAGAGAAAAAGTCTGGCAAGAACAAGCACAAGAAGTTCAAAGAATGGTGGAAGGAAGAATACTTTGCAGAGATTAACAAAAAAAGCAGGAAGTTGAAGCTGGAAAAGAGGTGGAAGAGGGGCAAGAAATTTGAGACCTGGAGGGATGGTTGTTTTAGTGGGGATCTCAGCAAGGGAAATAGCAGAAGGCATAATGCGCGATCTGATAGTCGAGGTAGGGACTTGTGGAAGGATGATCATAGTGGAGAAATCAGTTTCAGGAGGGGCTGGAGGAGTAGAAATAAAAAGAAAAATCCTTCAACGGGAAGTGATCTCTGGAGCGGGGATTTGCTTAGTAGAGATGTGAGCAGTACAACTAGCATGAGGGGAACAGTTTGTTATATTGCTCCTGAATATGGAGGTTGTGGGTTCCTCTCGGAGAAGGGTGATATTTATAGCTTCGGTGTCCTAATGTTAGTGATTGTTTCTGGAAGAAGGCCTCTGCATATTCTGGCTTCGCCCATGAAAGATTTTGAGAAGGCAAATCTTATCACATGGTCAAGGCACCTGGCTCAGACAGGCAATATTTTGGACCTCATGGATGAGAGCTTGAAAGATGTTTACAATAGGGATCAGGCAAGTCTTTGTATTACTCTGGCTCTACTATGCTTGCAGAGGATCCCAGAAATGAGGCCTGATATATCAGAGATTGTTAAAATTCTAAAAGGAGAGATGGATGCTCCAGGTCTGCCGCTAGAATTCTCACCTTCTCCTCCTTGCAGAGTCTTCAGTAAAGCTAGACAAAAACTGAATGCAGATGTTGCAGTTTCGATTGATTTTCCATAGTTTCTCAGTTCTCTGCTTGCTATTCTGCAATTTATTTTCGAGTTGGTTCTTGAATGTACCATAGCTAAAGGCCGAGCACAATTCTGCCCATTGTTCACCAAATCAAGGTATTTTCACTGAGGTTTACTGCAAAGTTTTTGTAGCAACTGTACCATCTCATTTTCCAAACAGTAATTCATGTATCCTTTGTGGGCAAATGGCTTGTATTATTGCAGCAGTGTATAGACAATATCATAGAGATACATACACAAAAAAACAAGTATTCACTTCAGTAACATATGTAGTGGCCAGTAGGAGGGCAATTTATGTATTGTTTGGAATAGAGTCTGTGATAATATGCAGAGATTGCATTGTCTCTGAAACTATTTCACATTCCAACCTCTTAGACAGATAATATAAATGCAGTGACTGCATTAATCTGCG

Ace file of the UniGene sp_v3.0_unigene3346

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	protein kinase-like protein [Arabidopsis thaliana] sp\|Q9SAH3.1\|Y1887_ARATH RecName: Full=Putative receptor-like protein kinase At1g80870 gb\|AAF14675.1\|AC011713_23 Contains similarity to gb\|U82481 KI domain interacting kinase 1 from Zea mays and contains P	-	-	0.0	45%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	51%
Sma3	Chromosome chr10 scaffold_81, whole genome shotgun sequence	-	-	8.216e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	Non-specific protein-tyrosine kinase.	EC:2.7.10.2	-	1.615e-13	-
Sma3		EC:2.7.11.3-	-	4.155e-09	-

Source	Gene names
Sma3	17L07.5; AT1G07650; AT1G29750; AT3G24550; AT4g32710; At1g29750; At1g49270; At1g52290; At1g80870; At2g19130; At2g45590; At3g26940; At4g11470; At4g25390; At4g34440; At4g34440/T4L20_20; At5g06740; CDG1; CRK31; F13F21.28; F19K6.9; F1N18.19; F1N18.20; F23A5.23

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	integral to plasma membrane	GO:0005887	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	protein kinase activity	GO:0004672	Molecular Function	-
Sma3	protein serine/threonine kinase activity	GO:0004674	Molecular Function	-
Sma3	protein tyrosine kinase activity	GO:0004713	Molecular Function	-
Sma3	receptor activity	GO:0004872	Molecular Function	-
Sma3	structural constituent of cell wall	GO:0005199	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	sugar binding	GO:0005529	Molecular Function	-
Sma3	kinase activity	GO:0016301	Molecular Function	-
Sma3	metal ion transmembrane transporter activity	GO:0046873	Molecular Function	-
Sma3	protein phosphorylation	GO:0006468	Biological Process	-
Sma3	metal ion transport	GO:0030001	Biological Process	-
Sma3	recognition of pollen	GO:0048544	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Protein kinase, catalytic domain	IPR000719	-	-
Sma3	Epidermal growth factor-like domain	IPR000742	-	-
Sma3	S-locus glycoprotein	IPR000858	-	-
Sma3	Blue (type 1) copper domain	IPR000923	-	-
Sma3	Legume lectin domain	IPR001220	-	-
Sma3	Serine-threonine/tyrosine-protein kinase catalytic domain	IPR001245	-	-
Sma3	Bulb-type lectin domain	IPR001480	-	-
Sma3	Leucine-rich repeat	IPR001611	-	-
Sma3	Alpha-isopropylmalate/homocitrate synthase, conserved site	IPR002034	-	-
Sma3	Chaperonin TCP-1, conserved site	IPR002194	-	-
Sma3	Serine/threonine- / dual-specificity protein kinase, catalytic domain	IPR002290	-	-
Sma3	Lipocalin	IPR002345	-	-
Sma3	Ribosomal protein L10, eubacterial, conserved site	IPR002363	-	-
Sma3	Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB	IPR002523	-	-
Sma3	Gnk2-homologous domain	IPR002902	-	-
Sma3	PAN-1 domain	IPR003014	-	-
Sma3	Apple-like	IPR003609	-	-
Sma3	Pistil-specific extensin-like protein	IPR003882	-	-
Sma3	Epidermal growth factor-like	IPR006210	-	-
Sma3	Serine/threonine-protein kinase, active site	IPR008271	-	-
Sma3	PAN-2 domain	IPR013227	-	-
Sma3	Concanavalin A-like lectin/glucanase, subgroup	IPR013320	-	-
Sma3	Glycoside hydrolase, subgroup, catalytic domain	IPR013781	-	-
Sma3	SKG6/AXL2 alpha-helix transmembrane domain	IPR014805	-	-
Sma3	Protein kinase, ATP binding site	IPR017441	-	-
Sma3		IPR017442	-	-
Sma3	Homeobox, conserved site	IPR017970	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G80870.1	Protein kinase superfamily protein chr1:30392133-30394211 FORWARD LENGTH=692	47%
RefSeq	Arabidopsis thaliana	NP_178202.1	protein kinase-like protein [Arabidopsis thaliana]	47%
RefSeq	Populus trichocarpa	XP_002303855.1	predicted protein [Populus trichocarpa]	48%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: coniferopsida.fasta

Fln subject: C0PRI9

Fln msg: your sequence is longer than subject: 745 - 656

Fln protein: LGVGVVILVVLLLILWYNHLKSSRTSPYDLTAVRLQRFTYRELKASTRSFNSTHRLGKGGFGVVYKGVLRNGKEIAVKRLDITSLQGEREFQNELSIIGGLRSPFVVSLLGYCADRTRRLLVYEHMQNRSLQEALFENDSPSKLDWETRFKIILDIAQALAFLHLECDPPIIHGDIKPSNVLLDARFSAKLADFGLARLKCDADFGPELFSQDLGRSQEFQCRSQDLWKSQDLGKSQDLNISQDFNMSYDLYKNQDVGKMNRDNANTKTDAVDYGEGSIGKLSGRKMVNIIDGDGLSPRSVDKESEVDFALALQLQHQASSSSKIEYLSDNALVHEVVNSGDEEIGLQMKGKEILTEGEDWCKNCPSDAGTDDISSFDRSKELRASPSDCKDSKKKQPWGKDWWWRQDGSGELCAKDYVMEWIGSQIRPSRSGNWDDENKVEKAETDGTKTPEVHKEPSGELSLTESMRITEKKSGKNKHKKFKEWWKEEYFAEINKKSRKLKLEKRWKRGKKFETWRDGCFSGDLSKGNSRRHNARSDSRGRDLWKDDHSGEISFRRGWRSRNKKKNPSTGSDLWSGDLLSRDVSSTTSMRGTVCYIAPEYGGCGFLSEKGDIYSFGVLMLVIVSGRRPLHILASPMKDFEKANLITWSRHLAQTGNILDLMDESLKDVYNRDQASLCITLALLCLQRIPEMRPDISEIVKILKGEMDAPGLPLEFSPSPPCRVFSKARQKLNADVAVSIDFP*

Protein Length: 746

Fln nts: TACTGGGAGTTGGGGTGGTGATTTTAGTGGTGTTGCTGTTGATCCTGTGGTACAATCACTTGAAGAGCAGCAGAACCAGCCCTTATGATCTGACCGCTGTCAGGCTTCAGAGATTCACATACCGTGAGCTCAAAGCTTCTACCCGTTCATTCAACTCGACTCACAGGCTTGGGAAGGGAGGATTCGGTGTTGTTTACAAAGGGGTTCTCAGGAATGGCAAGGAAATTGCAGTCAAGAGGTTGGATATCACTTCTCTGCAAGGCGAAAGAGAATTTCAGAATGAATTGTCGATCATTGGGGGGCTCAGGTCTCCTTTTGTGGTTTCTCTGTTGGGGTACTGTGCTGATAGGACGAGGAGACTGCTAGTGTATGAGCATATGCAGAACAGAAGCTTGCAGGAGGCTCTGTTTGAGAATGATTCGCCTTCGAAGTTGGATTGGGAAACCAGGTTTAAGATAATTCTGGACATTGCCCAAGCGCTGGCCTTTCTGCACCTTGAGTGTGATCCACCCATTATTCATGGCGATATAAAGCCCAGCAATGTTCTTCTGGATGCCCGTTTCAGTGCGAAACTAGCTGATTTTGGGCTGGCCAGACTTAAGTGCGATGCTGACTTTGGGCCTGAGCTATTTAGTCAGGACCTTGGGCGAAGCCAAGAGTTTCAATGCAGAAGTCAGGATCTGTGGAAGAGCCAGGATCTAGGTAAGAGCCAAGACCTTAACATAAGCCAGGATTTTAATATGAGCTATGATCTTTATAAAAACCAGGATGTTGGAAAGATGAACAGAGATAATGCAAATACTAAAACAGATGCTGTTGACTATGGGGAGGGGAGCATTGGGAAGCTCTCTGGTAGGAAGATGGTAAACATTATAGATGGAGATGGCCTGAGTCCAAGGTCTGTTGACAAGGAATCTGAGGTCGACTTCGCTCTGGCATTACAGTTGCAGCATCAAGCTTCTTCCTCTAGTAAAATTGAATATTTAAGTGATAATGCCCTGGTGCACGAGGTTGTCAATAGTGGGGATGAGGAAATTGGGTTACAGATGAAGGGAAAAGAGATTCTGACAGAGGGTGAGGATTGGTGCAAAAATTGCCCTTCGGATGCTGGAACCGATGATATCAGTAGCTTTGATAGGAGCAAGGAATTGAGAGCATCTCCCTCTGATTGCAAAGATTCGAAAAAGAAGCAGCCTTGGGGAAAGGATTGGTGGTGGAGACAAGATGGCAGTGGTGAGCTATGTGCTAAAGACTATGTGATGGAGTGGATTGGTAGTCAAATTAGGCCTTCCAGGAGTGGAAACTGGGATGATGAGAACAAGGTGGAGAAAGCAGAGACTGATGGAACCAAGACCCCGGAGGTCCATAAAGAACCCAGTGGAGAGCTGAGTCTTACTGAATCCATGCGAATAACAGAGAAAAAGTCTGGCAAGAACAAGCACAAGAAGTTCAAAGAATGGTGGAAGGAAGAATACTTTGCAGAGATTAACAAAAAAAGCAGGAAGTTGAAGCTGGAAAAGAGGTGGAAGAGGGGCAAGAAATTTGAGACCTGGAGGGATGGTTGTTTTAGTGGGGATCTCAGCAAGGGAAATAGCAGAAGGCATAATGCGCGATCTGATAGTCGAGGTAGGGACTTGTGGAAGGATGATCATAGTGGAGAAATCAGTTTCAGGAGGGGCTGGAGGAGTAGAAATAAAAAGAAAAATCCTTCAACGGGAAGTGATCTCTGGAGCGGGGATTTGCTTAGTAGAGATGTGAGCAGTACAACTAGCATGAGGGGAACAGTTTGTTATATTGCTCCTGAATATGGAGGTTGTGGGTTCCTCTCGGAGAAGGGTGATATTTATAGCTTCGGTGTCCTAATGTTAGTGATTGTTTCTGGAAGAAGGCCTCTGCATATTCTGGCTTCGCCCATGAAAGATTTTGAGAAGGCAAATCTTATCACATGGTCAAGGCACCTGGCTCAGACAGGCAATATTTTGGACCTCATGGATGAGAGCTTGAAAGATGTTTACAATAGGGATCAGGCAAGTCTTTGTATTACTCTGGCTCTACTATGCTTGCAGAGGATCCCAGAAATGAGGCCTGATATATCAGAGATTGTTAAAATTCTAAAAGGAGAGATGGATGCTCCAGGTCTGCCGCTAGAATTCTCACCTTCTCCTCCTTGCAGAGTCTTCAGTAAAGCTAGACAAAAACTGAATGCAGATGTTGCAGTTTCGATTGATTTTCCATAG___TTTCTCAGTTCTCTGCTTGCTATTCTGCAATTTATTTTCGAGTTGGTTCTTGAATGTACCATAGCTAAAGGCCGAGCACAATTCTGCCCATTGTTCACCAAATCAAGGTATTTTCACTGAGGTTTACTGCAAAGTTTTTGTAGCAACTGTACCATCTCATTTTCCAAACAGTAATTCATGTATCCTTTGTGGGCAAATGGCTTGTATTATTGCAGCAGTGTATAGACAATATCATAGAGATACATACACAAAAAAACAAGTATTCACTTCAGTAACATATGTAGTGGCCAGTAGGAGGGCAATTTATGTATTGTTTGGAATAGAGTCTGTGATAATATGCAGAGATTGCATTGTCTCTGAAACTATTTCACATTCCAACCTCTTAGACAGATAATATAAATGCAGTGACTGCATTAATCTGCG

Fln Alignment:

Contig3346___FTYRELKASTRSFNSTHRLXXXXXXXXXXXXLRNGKEIAVKRLDITSLQGEREFQNELSIIGGLRSPFVVSLLGYCADRTRRLLVYEHMQNRSLQEALFENDSPSKLDWETRFKIILDIAQALAFLHLECDPPIIHGDIKPSNVLLDARFSAKLADFGLARL
C0PRI9______________FTYEDLEAATNGFSRTNLLGQGGFGYVYKGILPGSKTIAVKQLKVGGSQGEREFQAEVEIISRVHHRHLVSLVGYCIAGSQRLLVYEFVPNDTLEHHLHGKGQPN-MEWPTRLKIAIGAARGLAYLHEDCYPKIIHRDIKASNILLDSNFEAKVADFGLAKL

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
183	20			80	0.995493
1809		33		66	0.997452
1810			75	25	0.996473
1811		25	75		0.996473
2108		16		83	0.994512
2125			83	16	0.994512
2126	83		16		0.994512
2128	83		16		0.994512
2140		14	85		0.993533
2146	14	85			0.993533
2151	85			14	0.993533
2153	85		14		0.993533
2154	85	14			0.993533
2158	14			85	0.993533
2160	85			14	0.993533
2162	14	85			0.993533
2206	85	14			0.993533
2207	85		14		0.993533
2209		14	71	14	0.984337
2210		85	14		0.993533
2211	85			14	0.993533
2214		14		85	0.993533
2215		14	85		0.993533
2220	85		14		0.993533
2221		14	85		0.993533
2223			14	85	0.993533
2226	14		85		0.993533
2227	85	14			0.993533
2229		14		85	0.993533
2230	14		85		0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain