SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3335

Length: 1709 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene3335

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DNA helicase, TBP-interacting protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9TL22_PHYPA	-	-	0.0	77%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Sma3	DNA helicase, TBP-interacting protein	-	-	5.005e-12	-

Source	Gene names
Sma3	At3g49830; At5g22330; At5g67630; CHLREDRAFT_192123; CHLREDRAFT_24073; GSVIVT00010591001; GSVIVT00024530001; MICPUCDRAFT_19130; MICPUCDRAFT_44976; MICPUN_109123; MICPUN_98268; OJ1014_E09.2; OJ1361_E02.120; OSTLU_31398; OSTLU_43499; Os01g0837500; Os06g01869

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	DNA helicase activity	GO:0003678	Molecular Function	-
Sma3	ATP-dependent peptidase activity	GO:0004176	Molecular Function	-
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	meristem development	GO:0048507	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3		IPR001984	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	CCAAT-binding factor	IPR005612	-	-
Sma3	DNA helicase, DnaB-like, C-terminal	IPR007694	-	-
Sma3	TIP49, C-terminal	IPR010339	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G67630.1	P-loop containing nucleoside triphosphate hydrolases superfamily protein chr5:26967535-26969306 REVERSE LENGTH=469	81%
RefSeq	Arabidopsis thaliana	NP_201564.1	RuvB-like protein 2 [Arabidopsis thaliana]	81%
RefSeq	Populus trichocarpa	XP_002323491.1	predicted protein [Populus trichocarpa]	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LQ05

Fln msg:

Fln protein: MTELKMSETRDLTRLERIGAHSHIRGLGLDDALEARNASQGMVGQKSARKAAGIILEMIKEGKIAGRAVLLAGQPGTGKTAIAMGMAKSLGEETPFAMMSGSEIFSLDMSKTEALTQAFRKAIGVKIKEETEVIEGEVVEIQIDRPATSGAAAKTGKLTLKTTEMETVHDLGTKMIEGLSKEKVQSGDVIAIDKASGKITKLGRSRTRSKDYDAMGPQTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTGEIRSEVRDQIDGKVAEWREEGKADIVPGVLFIDEVHMLDIECFSFLNRALENAMSPILVVATNRGITKIRGTNYKSPHGIPIDFLDRLLIISTEPYTEDDMHKILEIRSEEEDIALSEDAKELLTKIAVNTSLRYAIHLITAAALACQKRKAKCVEVEDVSRVYQLFMDVKRSTQFLMEYQEQFMFNEVPDERDEDKMDE*

Protein Length: 465

Fln nts: GTCGAGCTTTTTGAAACTTAGCAGGTTTCGAACGGTGATTTTTTAAGAAAGAGCC_-_ATGACGGAACTAAAGATGTCGGAGACTAGGGATTTAACGCGCCTAGAACGAATAGGCGCCCATTCGCACATCAGAGGCTTAGGGCTCGATGATGCATTAGAAGCCCGCAATGCTTCACAGGGTATGGTCGGGCAGAAATCCGCTAGAAAAGCCGCAGGAATTATTTTGGAAATGATTAAGGAAGGGAAAATAGCAGGCCGCGCGGTTCTGTTGGCAGGCCAGCCTGGGACAGGTAAGACCGCCATAGCCATGGGCATGGCTAAATCCCTGGGCGAAGAAACTCCCTTTGCAATGATGTCAGGCAGTGAAATTTTTTCATTAGACATGAGCAAGACGGAGGCTTTGACACAGGCGTTCAGGAAGGCAATAGGGGTTAAAATTAAGGAAGAGACTGAAGTTATTGAAGGCGAAGTTGTCGAGATACAGATTGATCGGCCTGCCACATCGGGCGCCGCCGCAAAGACCGGGAAATTGACATTGAAGACAACAGAGATGGAGACTGTGCATGATTTGGGGACCAAAATGATCGAGGGGTTGAGCAAGGAGAAGGTCCAGAGTGGGGATGTGATCGCGATCGACAAAGCTTCTGGGAAGATTACGAAGTTGGGGCGGTCTCGTACGAGGTCCAAGGATTATGATGCGATGGGGCCGCAGACCAAGTTCGTTCAGTGTCCAGATGGAGAGCTGCAGAAGCGCAAGGAGGTAGTACATTGCGTTACGCTACATGAGATCGACGTCATCAATAGCAGGACCCAAGGGTTTTTGGCCCTCTTTACAGGAGATACTGGAGAAATCCGTTCTGAAGTCAGGGATCAGATTGACGGTAAAGTTGCTGAATGGAGGGAAGAGGGCAAAGCTGACATTGTACCAGGAGTGCTTTTTATTGATGAAGTCCATATGCTTGACATTGAATGCTTCTCTTTTTTGAATCGTGCTCTAGAGAATGCGATGTCACCAATATTGGTTGTTGCAACAAATCGTGGTATCACAAAAATCCGTGGAACAAATTACAAGTCTCCACATGGTATACCCATTGATTTCTTGGATCGTCTGCTCATTATTTCGACAGAGCCATATACAGAAGATGATATGCACAAAATTCTTGAGATAAGATCTGAAGAAGAAGACATTGCATTGTCAGAGGATGCCAAGGAACTTCTAACAAAGATAGCAGTTAATACTTCATTGCGCTATGCCATTCACTTAATCACAGCAGCTGCTCTAGCTTGCCAGAAGCGAAAGGCGAAATGTGTTGAGGTTGAGGATGTCAGCAGAGTTTACCAATTATTTATGGATGTTAAGAGATCAACCCAATTCCTTATGGAATATCAGGAGCAATTCATGTTTAATGAGGTCCCTGATGAGAGGGATGAAGACAAAATGGACGAGTAA___TTGTTTTCCTAGAAATTTTACGTTTCCCAACAAAGAGTATAATTCTGTATTCAGAACAAGCAACATAAATATCAAATAAACGGAGGAAAGTACAAGATCAGGTGTTTTACTGATCTACTTGTGAGCAAGTAGTGGTAATGTTTAGAAAATTGTACAGCTACCTTATGAAGATGTTGTTTTGAGATAGAAGTTGCAGGCCTGTTTTTTTCCATGGTACTTGATAATGCTCCAGATTAGGTTGCTTAATTAAATTATTGCGTAC

Fln Alignment:

Contig3335___MTELKMSETRDLTRLERIGAHSHIRGLGLDDALEARNASQGMVGQKSARKAAGIILEMIKEGKIAGRAVLLAGQPGTGKTAIAMGMAKSLGEETPFAMMSGSEIFSLDMSKTEALTQAFRKAXXXXXXXXXXXXXXXXXXXQIDRPATSXXXXXXXXXXXXXXEMETVHDLGTKMIEGLSKEKVQSGDVIAIDKASGKITKLGRSRTRSKDYDAMGPQTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTGEIRSEVRDQIDGKVAEWREEGKADIVPGVLFIDEVHMLDIECFSFLNRALENAMSPILVVATNRGITKIRGTNYKSPHGIPIDFLDRLLIISTEPYTEDDMHKILEIRSEEEDIALSEDAKELLTKIAVNTSLRYAIHLITAAALACQKRKAKCVEVEDVSRVYQLFMDVKRSTQFLMEYQEQFMFNEVPDERDEDKMDE
B8LQ05______________MAELKLSETRDLTRIERIGAHSHIRGLGLDDALEARKVSQGMVGQTSARKAAGVILEMIKEGKIAGRAVLLAGQPGTGKTAIAMGMAKSLGEETPFAMMAGSEIFSLDMSKTEALTQAFRKAIGVRIKEETEIIEGEVVEIQIDRPATSGAAAKTGKLTLKTTEMETVYDLGSKMIEGLSKEKVQSGDVIAIDKASGKITKLGRSFARSRDYDAMGPQTKFVQCPDGELQKRKEVVHCVTLHEIDVINSRTQGFLALFTGDTGEIRSEVREQIDSKVAEWREEGKAEIVPGVLFIDEVHMLDIECFSFLNRALENDMAPILVVATNRGITKIRGTNYKSPHGIPIDLLDRLLIISTQPYTEDEMRQILDIRCEEEDVGMSDEAKELLTKIGFETSLRYAIHLITAAALACQKRKGKLVEIVDVSRAYQLFVDIKRSTQFLIEYQEQFMFNEVPGEIEEDTMVE

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
79	33		66		0.997452
197	33		66		0.997452
498		75		25	0.996473
1360	60		40		1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain