SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3322

Length: 3591 nt

UniGene Fasta

>sp_v3.0_unigene3322
TTGATACCACTGCTTAAGCAGTGGTATCAACGAAGAGGACGGAGGGTCAGGGCGTGGAGATCAATCTGGAGACCTGATTTGATTTTCGATCCCGCTGATTAGAGCTTTGAACTTCCTAGGGTTCGAAAGGGGGTTTCTGTAGTTTCGGATTTCATCTAGTTTGAAATGGGGGTTCTGTAGTTTCGGATTTCATCTAGTTCGAAATGGGGGTTCTGTAGTTTCGGATTTACGAGGGTTTCGCCCATTGTTTATCATCTATTTTGACGAGGGCTTCGCCCATTGTTTGTCAACATCTCAAGGCTAAAGGGTTTGCTGACCAGATTAGGCGACGTTCTCTGAGCAGAATATAGTTTTCAGGAGGGGATCTGGAAATCTAGGAAAGAGGAATACACACACCAAAAAATTGTTAAGAGCGAAGACGGAATGTTGTTTTTATGGGTATCGGTGTTTATGTAACAAACTGAAGTAGGTTTTCCGGCAAAAATTCACTCTACCTTCGGCAGGTCTCGTTCGTGTAACCTGGACCTGGGTACAACAGATTGTGACTGCTGGACCTAGGTCTCTCTGAACAGATTCAGAATTTTGATAAAGGATAGGATGGAGCGAGCTTTAGTTGCTACTCGTCCCTTGTGGATGAAACAAGCCGAGGAAGCCAAGTTGAAGGATGAAGAACAAAAAGCTGCAGCTGCTCGGGCGGCCTTCGACGCCACATTCAAGTATGTTGACAGATCTCCTAGAAAGGAAACTGCGTCATCTGACAGTGAAGCTGATGAGACAGATAGGTTGGCCAACAAACCTATAGGACCAGTAGATCCATCGAAATGCACGGCTGCTGGGTCTGGGGTAGGTGGTGGAGCTGCAGGTGCTGCAGAGTCATTTGTTGTTGTTACTAAAGATTTTGAGGGAAGGCGAATACCCCATGGTGGAGATCAAATCAAAGCTATTATTGCACCAGGCCTTGGAGTAGGAGGTGTTGAACAAGAGGCAATGGTGAAAGACAATGGAGATGGGACATATACGGTGAGTTATGCTGTCGCTAAGAGAGGCAATTATATGGTCCGCGTGGAGTGCAATGGCAAACCAATCCTAGGCAGTCCTTTCCCTGTTTTCTTCAGTGCTGGCAGCCTTCCTATGAATGGTAGCGTACCTTATCCAAATGGGGTGAATCAGGGAGCGCCTAATTATTCTGGGACGATGCCAGGATTGTTTTCAGGGATGCTTGGGATGATTCCTGGTATTCGGCCAGGTGCATCAGCCGGAGTTGTTTTGCCTGGTCTTGGAGCATCACTTGGGGAAGTTTGTCAAGATTACCTTAATGGACAGTGTGCGTTGAATGATTGCAAGTTTAATCACCCTCCATATAGTCAATTGATGGCTGCATTAGCCCCTGGAAGCACCATGGGAGGCCTTAGTCATATGCCTATGGCACCTTCTGCAGCTGCTATGGCGGCTGCACAGGCTATTGTTGCTGCACAAGCACTTCAAGCTCATGCTGCTCAAGCACAATCTGCCGGAGAATCAGCAGGTTCGAAGAATCACAATGGGAGCTCATCTTATCAAAATGAGCAAGATAAAAACGATTCTTCTCAGCATCCACCATTGCCAATGATGATGCAGCAAGCAGTTGCCATGCAGCAATTGCAGTTTAAACAGGCATTGCTTATGCAACAGTCAATGGCTACACAGCAGGCAGCCAGCAGGGCTGCATCAATGAAGTCTGCAACTGAAATGGCATCAGCTAGGGCTGCAGAAATAAGTAAAACCCTTAAAGTAGATGGAGATGATATTGATGAAAAGGCTGCAAGTCGAAAGTCAATATCTCCTAGGTCACGCGCAAAATCACGCTCTAGGTCAAGGTCCCCAGTTAGATATCGGCATGGTCGGCGCTCTCGATCACCTCCGATTCGATATCAGCGAGACCGCCAGTCCAGATCACCAGTGAGAGCTTACCGTGGCCACAGAAATCATGGCAGGGGTAGAAGTTATTATTACAGAGATGAGAGGAATAATTACCAAAAACTATATAGCAGGCGTGATTGGTTAAGATCACGGGATGAGCCTGTTGTCAATATGCGAAGGAAAAGGAGTAGGAGTCGGAGCAGAAGTAGGACAAGAAAGTCACCCCGAGCATGCTCTAGCTCCCCGAGGCATCACAGGGAAAGGAGGAATTCTCCTAATATGCACAAGGAAGAACAAAAGTCTACTTATCACTCTAGACGCTCAAGGTCTATGTCAAAAGAGTTGAGAGAAAACATTATGGACTATGAGGATGTGTCAAAAAATCCTCAGGAAAGTTCAAGGAAACAGGTAAAAGAGGTCAACAAGGTGGAGAAACATGACGTTCTTCAGGATATAGAGGAAATTAAGGAAGAAAAGTATGATAAAGACTCTGATAAACCAGAAAATTATAGGAAGAATCTAATAAGAACAGGCAAAGGAACTGACCAGGAAAATGCCAGGGAAGAAAGGATAAAAGTATCCAAAACTATCAATAAAGATAGTTATAGTGACAAAATGAAAGTTTCTGAGAAAACTGATGATGTATTGATGCAGATGGAGACAACTATTGTTGAGGAAGAGAATATTAAAGAGAAGAGAAGGCATACAAAAAAAAGTACGGTAGAAGATGATGGAGAGAATTTTACAGAAAAGAAATCACATAGAAAGGAAAAAAGAGCATATGAGGATGAATATGAAGTGGAAGAAAAGAGGTCACATAAGAAAGACAGGAAGCCACTGTATAGCGATGTCAAGGAGATGAAAGAAAAGAGTCAGAGGAGAAAGGGAAATGAAAAAGATTATGAGGTAGATGAGGCATCAAAACGATATAAAGAACGTAGTAAGAAGGAGCATGACAGTGACAAAGTGGATAAAAAGAAGAGAAAATATAAATACGGGCCAATGTCTGCCTCTGGTTCATCAGAAGGTTCACCAGTGGAGGATGTTGACAGAGGCAATAGTTCTCACAGAAAAAACCATAGTCGACACAGTAGGAAGTATCGAGGAGTTTCTAAGTCAGTTTCTCCAGGCCACAGTTTTGAAGACTGAAAAGGCTAACTGGCTAGAAGTTGTTGACATTTGCAGTGAGCTCCGAATAAGAGTATTCATATCTGATGGTGCTCAGAAATCATGTCACAATCTGGTTCCTGAAAGGTTTGCTTGGAGCTGAATTTTGAGCCAGTGCAAATTCCAAATGCTTTTTGATTGCAGGATTATGCTCGGCATTATGCTAGGGGATTGGCTATTGTTAGAACTTAATTACTGAATTTGCAATGGAGGAATTGTGTAATTGAATCCTTCATACTTATAATTTGTGTCAAAGAAAGATGACCAACTAGCAACACATTCTGTTGCAACTTATCTTTAGGTAGCTGGACTTTGCATCTTTGTTTTTTCCTTTGTTGTATAAAATGCTGACTGTTTGCACATTCTTCTTCATTAGTAAGCTTATGTTAGTTGTCACATAAAATTGACTTACAGAGTGTTGTGTTGAGTTCTGTATGCTATTCTAGGTTCTGTTGCATCTCTGTTCAAGATCAATGTTATCCAGTAGGACCTTTTAGACCTAAAAGAAAAAATTAAGTGCAAAAA

Ace file of the UniGene sp_v3.0_unigene3322

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana] gb\|AEE76829.1\| RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana]	-	-	0.0	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	92%

Source	Gene names
Sma3	PHYPADRAFT_65813; VITISV_034243;

Source	GOs	Term	Type	Identity
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	Zinc finger, CCCH-type	IPR000571	-	-
Sma3	Filamin/ABP280 repeat	IPR001298	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-
Sma3	Immunoglobulin-like fold	IPR013783	-	-
Sma3	Filamin/ABP280 repeat-like	IPR017868	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G23900.1	RNA recognition motif (RRM)-containing protein chr3:8631941-8635852 REVERSE LENGTH=987	54%
RefSeq	Arabidopsis thaliana	NP_001030753.1	RNA recognition motif (RRM)-containing protein [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002328861.1	predicted protein [Populus trichocarpa]	59%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AC95

Fln msg: your sequence is longer than subject: 817 - 166

Fln protein: MERALVATRPLWMKQAEEAKLKDEEQKAAAARAAFDATFKYVDRSPRKETASSDSEADETDRLANKPIGPVDPSKCTAAGSGVGGGAAGAAESFVVVTKDFEGRRIPHGGDQIKAIIAPGLGVGGVEQEAMVKDNGDGTYTVSYAVAKRGNYMVRVECNGKPILGSPFPVFFSAGSLPMNGSVPYPNGVNQGAPNYSGTMPGLFSGMLGMIPGIRPGASAGVVLPGLGASLGEVCQDYLNGQCALNDCKFNHPPYSQLMAALAPGSTMGGLSHMPMAPSAAAMAAAQAIVAAQALQAHAAQAQSAGESAGSKNHNGSSSYQNEQDKNDSSQHPPLPMMMQQAVAMQQLQFKQALLMQQSMATQQAASRAASMKSATEMASARAAEISKTLKVDGDDIDEKAASRKSISPRSRAKSRSRSRSPVRYRHGRRSRSPPIRYQRDRQSRSPVRAYRGHRNHGRGRSYYYRDERNNYQKLYSRRDWLRSRDEPVVNMRRKRSRSRSRSRTRKSPRACSSSPRHHRERRNSPNMHKEEQKSTYHSRRSRSMSKELRENIMDYEDVSKNPQESSRKQVKEVNKVEKHDVLQDIEEIKEEKYDKDSDKPENYRKNLIRTGKGTDQENAREERIKVSKTINKDSYSDKMKVSEKTDDVLMQMETTIVEEENIKEKRRHTKKSTVEDDGENFTEKKSHRKEKRAYEDEYEVEEKRSHKKDRKPLYSDVKEMKEKSQRRKGNEKDYEVDEASKRYKERSKKEHDSDKVDKKKRKYKYGPMSASGSSEGSPVEDVDRGNSSHRKNHSRHSRKYRGVSKSVSPGHSFED*

Protein Length: 818

Fln nts: TTGATACCACTGCTTAAGCAGTGGTATCAACGAAGAGGACGGAGGGTCAGGGCGTGGAGATCAATCTGGAGACCTGATTTGATTTTCGATCCCGCTGATTAGAGCTTTGAACTTCCTAGGGTTCGAAAGGGGGTTTCTGTAGTTTCGGATTTCATCTAGTTTGAAATGGGGGTTCTGTAGTTTCGGATTTCATCTAGTTCGAAATGGGGGTTCTGTAGTTTCGGATTTACGAGGGTTTCGCCCATTGTTTATCATCTATTTTGACGAGGGCTTCGCCCATTGTTTGTCAACATCTCAAGGCTAAAGGGTTTGCTGACCAGATTAGGCGACGTTCTCTGAGCAGAATATAGTTTTCAGGAGGGGATCTGGAAATCTAGGAAAGAGGAATACACACACCAAAAAATTGTTAAGAGCGAAGACGGAATGTTGTTTTTATGGGTATCGGTGTTTATGTAACAAACTGAAGTAGGTTTTCCGGCAAAAATTCACTCTACCTTCGGCAGGTCTCGTTCGTGTAACCTGGACCTGGGTACAACAGATTGTGACTGCTGGACCTAGGTCTCTCTGAACAGATTCAGAATTTTGATAAAGGATAGG_-_ATGGAGCGAGCTTTAGTTGCTACTCGTCCCTTGTGGATGAAACAAGCCGAGGAAGCCAAGTTGAAGGATGAAGAACAAAAAGCTGCAGCTGCTCGGGCGGCCTTCGACGCCACATTCAAGTATGTTGACAGATCTCCTAGAAAGGAAACTGCGTCATCTGACAGTGAAGCTGATGAGACAGATAGGTTGGCCAACAAACCTATAGGACCAGTAGATCCATCGAAATGCACGGCTGCTGGGTCTGGGGTAGGTGGTGGAGCTGCAGGTGCTGCAGAGTCATTTGTTGTTGTTACTAAAGATTTTGAGGGAAGGCGAATACCCCATGGTGGAGATCAAATCAAAGCTATTATTGCACCAGGCCTTGGAGTAGGAGGTGTTGAACAAGAGGCAATGGTGAAAGACAATGGAGATGGGACATATACGGTGAGTTATGCTGTCGCTAAGAGAGGCAATTATATGGTCCGCGTGGAGTGCAATGGCAAACCAATCCTAGGCAGTCCTTTCCCTGTTTTCTTCAGTGCTGGCAGCCTTCCTATGAATGGTAGCGTACCTTATCCAAATGGGGTGAATCAGGGAGCGCCTAATTATTCTGGGACGATGCCAGGATTGTTTTCAGGGATGCTTGGGATGATTCCTGGTATTCGGCCAGGTGCATCAGCCGGAGTTGTTTTGCCTGGTCTTGGAGCATCACTTGGGGAAGTTTGTCAAGATTACCTTAATGGACAGTGTGCGTTGAATGATTGCAAGTTTAATCACCCTCCATATAGTCAATTGATGGCTGCATTAGCCCCTGGAAGCACCATGGGAGGCCTTAGTCATATGCCTATGGCACCTTCTGCAGCTGCTATGGCGGCTGCACAGGCTATTGTTGCTGCACAAGCACTTCAAGCTCATGCTGCTCAAGCACAATCTGCCGGAGAATCAGCAGGTTCGAAGAATCACAATGGGAGCTCATCTTATCAAAATGAGCAAGATAAAAACGATTCTTCTCAGCATCCACCATTGCCAATGATGATGCAGCAAGCAGTTGCCATGCAGCAATTGCAGTTTAAACAGGCATTGCTTATGCAACAGTCAATGGCTACACAGCAGGCAGCCAGCAGGGCTGCATCAATGAAGTCTGCAACTGAAATGGCATCAGCTAGGGCTGCAGAAATAAGTAAAACCCTTAAAGTAGATGGAGATGATATTGATGAAAAGGCTGCAAGTCGAAAGTCAATATCTCCTAGGTCACGCGCAAAATCACGCTCTAGGTCAAGGTCCCCAGTTAGATATCGGCATGGTCGGCGCTCTCGATCACCTCCGATTCGATATCAGCGAGACCGCCAGTCCAGATCACCAGTGAGAGCTTACCGTGGCCACAGAAATCATGGCAGGGGTAGAAGTTATTATTACAGAGATGAGAGGAATAATTACCAAAAACTATATAGCAGGCGTGATTGGTTAAGATCACGGGATGAGCCTGTTGTCAATATGCGAAGGAAAAGGAGTAGGAGTCGGAGCAGAAGTAGGACAAGAAAGTCACCCCGAGCATGCTCTAGCTCCCCGAGGCATCACAGGGAAAGGAGGAATTCTCCTAATATGCACAAGGAAGAACAAAAGTCTACTTATCACTCTAGACGCTCAAGGTCTATGTCAAAAGAGTTGAGAGAAAACATTATGGACTATGAGGATGTGTCAAAAAATCCTCAGGAAAGTTCAAGGAAACAGGTAAAAGAGGTCAACAAGGTGGAGAAACATGACGTTCTTCAGGATATAGAGGAAATTAAGGAAGAAAAGTATGATAAAGACTCTGATAAACCAGAAAATTATAGGAAGAATCTAATAAGAACAGGCAAAGGAACTGACCAGGAAAATGCCAGGGAAGAAAGGATAAAAGTATCCAAAACTATCAATAAAGATAGTTATAGTGACAAAATGAAAGTTTCTGAGAAAACTGATGATGTATTGATGCAGATGGAGACAACTATTGTTGAGGAAGAGAATATTAAAGAGAAGAGAAGGCATACAAAAAAAAGTACGGTAGAAGATGATGGAGAGAATTTTACAGAAAAGAAATCACATAGAAAGGAAAAAAGAGCATATGAGGATGAATATGAAGTGGAAGAAAAGAGGTCACATAAGAAAGACAGGAAGCCACTGTATAGCGATGTCAAGGAGATGAAAGAAAAGAGTCAGAGGAGAAAGGGAAATGAAAAAGATTATGAGGTAGATGAGGCATCAAAACGATATAAAGAACGTAGTAAGAAGGAGCATGACAGTGACAAAGTGGATAAAAAGAAGAGAAAATATAAATACGGGCCAATGTCTGCCTCTGGTTCATCAGAAGGTTCACCAGTGGAGGATGTTGACAGAGGCAATAGTTCTCACAGAAAAAACCATAGTCGACACAGTAGGAAGTATCGAGGAGTTTCTAAGTCAGTTTCTCCAGGCCACAGTTTTGAAGACTGA___AAAGGCTAACTGGCTAGAAGTTGTTGACATTTGCAGTGAGCTCCGAATAAGAGTATTCATATCTGATGGTGCTCAGAAATCATGTCACAATCTGGTTCCTGAAAGGTTTGCTTGGAGCTGAATTTTGAGCCAGTGCAAATTCCAAATGCTTTTTGATTGCAGGATTATGCTCGGCATTATGCTAGGGGATTGGCTATTGTTAGAACTTAATTACTGAATTTGCAATGGAGGAATTGTGTAATTGAATCCTTCATACTTATAATTTGTGTCAAAGAAAGATGACCAACTAGCAACACATTCTGTTGCAACTTATCTTTAGGTAGCTGGACTTTGCATCTTTGTTTTTTCCTTTGTTGTATAAAATGCTGACTGTTTGCACATTCTTCTTCATTAGTAAGCTTATGTTAGTTGTCACATAAAATTGACTTACAGAGTGTTGTGTTGAGTTCTGTATGCTATTCTAGGTTCTGTTGCATCTCTGTTCAAGATCAATGTTATCCAGTAGGACCTTTTAGACCTAAAAGAAAAAATTAAGTGCAAAAA

Fln Alignment:

Contig3322___MQMETTIVEEENIKEKRRHTKKSTVEDDGENFTEKKSHRKEKRAYEDEYEVEEKRSHKKDRKPLYSDVKEMKEKSQRRKGNEKDYEVDEASKRYKERSKKEHDSXXXXXXXXXXXXGPMSASGSSEGSPVEDVDRGXXXXXXXXXXXXXXYRGVSKSVSPGHSFED
D5AC95______________MQMETAVVDEENIKEKRRHTKKSTVDDDGENFTEKKSHRKEKRAHEDEYEVEEKRSHKKDRKPLYSDVKEMKEKSQRRKGNEKDYEVDEASKRYKERSKKEHDSDKVDRKKRKYKYGPMSASDSSEGSPVEDVDRGNSTQRKHYSRHNRKYRGVSKSVSPGRSFED

SNPs (tot: 30)

Position	A %	C %	G %	T %	Probability
519	33		66		1.0
632	20		80		0.995493
707		83		16	0.994512
710		16		83	0.994512
794		80		20	0.995493
1024	11			88	0.923564
1025		11	88		0.923564
1027			88	11	0.923564
1060		11		88	0.923564
1508	88			11	0.923564
1602		14		85	0.993533
1619		12	87		0.992554
1621	87		12		0.992554
1625	87			12	0.992554
1728	11		88		0.923564
1734	11		88		0.923564
1859	10		90		0.90298
2019	90		10		0.90298
2090		11		88	0.923564
2260	16			83	0.994512
2273			20	80	0.995493
3034	88		11		0.923564
3376	10		89		0.999919
3383	5		84		0.999846
3385	84		5		0.999846
3387		85	14		0.999981
3388	16			83	0.999991
3389	16			83	0.999991
3438		12		87	0.992554
3462		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain