SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3308

Length: 1448 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

Ace file of the UniGene sp_v3.0_unigene3308 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Tir-nbs resistance protein n=1 Tax=Populus trichocarpa RepID=B9GWT3_POPTR	-	-	0.0	55%
FL-Next	tr=Tir-nbs resistance protein; subsp. trichocarpa).	-	-	0.0	58%
Sma3	Tir-nbs resistance protein	-	-	7.241e-08	-

Source	Gene names
Sma3	6J23.20; AT4g23440; At4g23440; At5g56220; At5g56220/K24C1_3; F16G20.140; GSVIVT00003329001; GSVIVT00012890001; Os01g0760400; Os08g0499100; Os09g0481600; OsI_03819; OsI_29754; OsI_31792; OsJ_03529; OsJ_27818; OsJ_29780; P0460E08.19; P0463D04.26; P0512C01.8

Source	GOs	Term	Type	Identity
Sma3	intrinsic to membrane	GO:0031224	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	transmembrane signaling receptor activity	GO:0004888	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	signal transduction	GO:0007165	Biological Process	-
Sma3	innate immune response	GO:0045087	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	AAA+ ATPase domain	IPR003593	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G23440.1	Disease resistance protein (TIR-NBS class) chr4:12237765-12240659 FORWARD LENGTH=964	53%
RefSeq	Arabidopsis thaliana	NP_194075.1	TIR-NBS class of disease resistance protein [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002303599.1	tir-nbs resistance protein [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9GWT3

Fln msg: your sequence is shorter than subject: 412 - 1005

Fln protein: TTHVIISTRLSCVMNLDPVRLSYLSSVEAMSLMKGKRRDFSVVELDALRTIEERLGRLTLGLGIVGSILSELPITPSRLLDTINRVSLRDMLWSIREDSTLRSHPFLMQLLDVCFNILDHANKPKKLATRMLLVGAWFAPYPIPISLLSIAAHKAPERASGLQLQKKCLHAIGCCFRVSQIRKSEAEASTMLIRFGIARSSTREGWINMHEMIQLYARKKGGNSAARAMFQGVGSRGAISLHSEHLWAACFLVFGFGNDPVIVVGKVSELLSFIKRVAIPLALHSFTSFSRCQAALELLRICTCALEAAEESFVSQVQNWLDKSTCWRMLGRADTKLDEYLWQNVTLLKALLLEMRAKLMLRGGLYDGGEDLCRTCISIRTVMLGADHPDTIAAQQTLAKLVRYQTNIRVG*

Protein Length: 413

Fln nts: ACAACGCATGTGATAATTTCTACTCGACTCTCCTGTGTGATGAATCTAGATCCAGTGAGGCTGTCATACTTATCAAGTGTGGAAGCTATGTCTTTGATGAAGGGAAAGAGGAGGGATTTTTCAGTAGTGGAGCTTGATGCGCTAAGAACAATTGAAGAAAGGTTGGGTCGGTTAACATTAGGCCTCGGGATTGTTGGTTCCATCCTTTCAGAGCTTCCCATTACACCTTCTAGACTCCTTGATACCATTAATAGGGTGTCCTTGAGAGATATGTTATGGAGTATTCGAGAAGATTCAACTTTGAGAAGTCATCCCTTTCTTATGCAGCTTCTGGATGTATGCTTCAACATTCTTGATCATGCAAATAAACCAAAGAAATTAGCTACCAGGATGTTATTGGTTGGTGCTTGGTTTGCTCCTTACCCTATCCCAATCTCTCTTCTTTCAATTGCAGCGCACAAGGCTCCTGAAAGAGCAAGTGGATTGCAGCTACAGAAGAAATGCCTGCATGCAATTGGTTGCTGTTTTAGGGTATCTCAGATAAGAAAATCAGAAGCAGAAGCATCAACTATGTTGATCAGATTTGGTATTGCAAGAAGTAGCACCAGAGAGGGATGGATTAACATGCATGAGATGATTCAGTTATATGCGAGAAAAAAAGGAGGCAACTCTGCTGCCAGAGCTATGTTCCAAGGTGTTGGTAGCAGAGGGGCAATCTCCCTACATTCAGAGCATTTATGGGCAGCTTGTTTTCTTGTATTTGGATTTGGAAATGACCCAGTGATTGTAGTTGGTAAGGTATCTGAATTACTTTCCTTCATTAAAAGAGTAGCAATTCCATTGGCACTTCATTCTTTTACTTCCTTCTCAAGATGCCAGGCAGCTTTAGAACTTCTACGTATCTGCACCTGTGCCTTGGAGGCTGCCGAAGAGTCCTTTGTTTCTCAAGTGCAAAATTGGTTGGATAAATCCACATGTTGGAGAATGCTTGGTCGCGCTGATACGAAATTGGATGAGTATCTCTGGCAAAATGTAACACTTCTGAAGGCTTTGCTTTTGGAAATGAGGGCAAAACTAATGCTCAGAGGTGGACTATATGATGGAGGGGAGGATCTGTGCAGAACCTGCATCAGTATCAGAACGGTAATGTTGGGTGCAGATCATCCTGACACCATAGCTGCTCAGCAGACACTGGCCAAACTTGTCAGATACCAAACAAATATTAGAGTTGGGTAG___ATGATAAGTTTGATTAATGCAGTTGACATACAACTGTGGAATATGCAGGCAACATTCCGGTGCTCACCAAGTCATTCTCCCGTCATATGTTTATTAGTGAAATATTATTCGAAAAATTCTGCATGTTGTTTTATTCTGTTCCTCTATTTTTTAGGAAAATTCACTATGCTTTGTAGAGGATATCACTAATTCAAATGCGGTACAATTCAAAG

Fln Alignment:

Contig3308___THVIISTRLSCVMNLDPVRLSYLSSVEAMSLMKGKRRDFSVVELDALRTXXXXXXXXXXXXXXXGSILSELPITPSRLLDTINRVSLRDMLWSIREDSTLRSHPFLMQLLDVCFNILDHANKPKKLATRMLLVGAWFAPYPIPISLLSIAAHKAPERASGLQLQKKCLHAIGCCFRVSQIRKSEAEASTMLIRFGIARSSTREGWINMHEMIQLYARKKGGNSAARAMFQGVGSRGAISLHSEHLWAACFLVFGFGNDPVIVVGKVSELLSFIKRVAIPLALHSFTSFSRCQAALELLRICTCALEAAEESFVSQVQNWLDKSTCWRMLGRADTKLDEYLWQNVTLLKALLLEMRAKLMLRGGLYDGGEDLCRTCISIRTVMLGADHPDTIAAQQTLAKLVRYQTNIRV
B9GWT3______________THIIISTRLPRVMNLEPLKLSYLSAVEAMCLMQGSDKDYSIAEIDALRVIEEKVGRLTLGLAIVGAILSELPINPSRLLDTINRMPLREMSWSGREAHSMRKNTFLLQLFEVCFSIFDHADGPRSLATRMVQASAWFAPAAIPVSLLALAAKKIPEKHKGTHLWRKLLSSLSCGLSSSYTKRSEAEASSMLLRFNIARSSTKQGYVHVNELIKLYARKRGVTGVAQAMVHAVISRGSVSHHSEHIWAACFLLFAFGTDPKAVELKVSELLYLVKQVVLPLAIRTFITFSRCSAALELLRLCTNALEAADQAFVTPVEKWLDKSLCWRPI-QTNAQLNPYLWQELALSRATVLETRAKLMLRGGQFDIGDDLIRKAIFIRTSICGDDHPDTVSARETLSKLTRLHANVQI

SNPs (tot: 3)

Position	A %	C %	G %	T %	Probability
399	66			33	0.997452
401		66		33	0.997452
490	75		25		0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain