SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3305

Length: 4215 nt

UniGene Fasta

>sp_v3.0_unigene3305
AGGTTTTTTCCAAGGATCTTTATTCGGATCGATCGATCCAGAAAGGATTTGAAGGTAAGTGGTTTTGTTATTGGAGGTGGTTGACATCCGCAGAGGGCGATTTGCATCAACAGATATACCCTCAAACGCAATGACAATGATGGCCCCTCCTCCTTTAGATCAGGAAGAGGACGAAATGCTGGTCCCGCATGCCGAGTTCAATGACGGGGCTCAGCCCATGGAAGTTGCAGGGCAAGGAGAGACGGTTAGTACCGCGGAGAATCAACCCCCGGATGATCCTCCTTCCTCTCGATTTACCTGGGCTGTTGATAATTTTTCGAGGTTAAATGTGAAAAAGCATTACTCAGAAGTTTTCACGGTGGGAGGTTACAAATGGCGGGTGCTAATATTTCCGAAGGGAAACAATGTGGATCACCTATCGATGTACTTGGATGTGGCGGATTCTGCTACATTGCCTTATGGTTGGAGCAGATATGCACAGTTTAGCTTGGCAATTGTTAATCAGATTAGCCCTAAATATTCCATCCGGAAAGATACACAACATCAGTTCAATGCCCGAGAGAGTGACTGGGGTTTCACATCGTTTATGCCGCTGGGAGATGTGTATGATCATTCAAAAGGTTATCTGGTGAATGATACTCTCATAATAGAAGCGGACGTTGTTGTTCGCAGAGTAATTGATTATTGGTCCTATGACTCAAAGAAGGAAACAGGTTATGTTGGGCTCAAGAATCAAGGAGCAACATGCTACATGAACTCACTTCTTCAGACATTATATCACATTCCTTACTTCAGAAAGGCCGTGTATCATATGCCAACAACTGAAAATGACATGCCATCTAGCAGCATTCCATTGGCTTTACAGAGTTTGTTTTATAAGCTCCAGTATAGTGACACCAGTGTTGCGACAAAGGAGTTAACGAAATCTTTTGGATGGGACACATATGATTCTTTTATGCAACATGATGTTCAGGAGTTGAACAGAGTGTTATCTGAGAAGTTAGAAGACAAAATGAAGGGGACAGTTGTTGAGGGCACAATACAGCAACTGTTTGAGGGCCATCATATGAATTATATTGAATGCATAAATGTAGATTACAAGTCAACAAGGAAAGAGTCATTTTATGATCTGCAGCTTGATGTCAAAGGTTGTCGAGATGTCTATGCTTCATTTGATAAATATGTTGAAGTGGAACGCCTTGAAGGGGATAATAAATATCATGCTGAGCAATATGCTTTACAGGATGCAAGGAAGGGTGTTCTTTTCATTGATTTTCCTCCTGTACTACAACTTCAACTGAAGCGCTTTGAATATGACTTCATGCGAGACACAATGGTTAAGATAAATGATCGCTATGAGTTTCCTTTGCAACTTGATCTTGATAGAGACGATGGGAAATATCTTTCTCCAGATGCAGATAGAAGTGTCCGCAATTTATATACTCTTCACAGTGTTTTAGTACACAGCGGAGGTGTTCATGGGGGCCATTACTATGCTTTTATCCGTCCAACTCTTTCAGACCAGTGGTTCAAGTTTGATGATGAGCGTGTAACAAAGGAAGACATAAAGAGGGCACTAGAGGAGCAATATGGCGGGGAGGAAGAGCTACCTCAGACAAATCCAGGTTTCAACAACACTCCATTTAAGTTTACAAAATACTCCAATGCTTACATGCTTGTTTATATCAGAGAGAGTGACAAGGATAAAATTATCTGCAATGTTGATGAGAAGGATATAGCAGAGCATCTTAGGGTAAGGCTAAAGAAAGAGCAAGAGGAGAAAGAGCACAAAAGAAAAGAGAAGGCTGAGGCACACCTTTATACCATCATAAAGGTTGCTCGTGATGAAGATCTTGCTGAGCAGATTGGAAAGGACATATTTTTTGATCTTGTTGACCATGACAAAGTTCGTAGTTTTCGGATTCAGAAACAAACACCATTTACTGTTTTCAAGGAAGAGGTGGCAAAGGAATTTGGTATCCCTGTTCAATTTCAGCGTTTCTGGTTATGGGCAAAACGACAGAACCATACATATCGCCCCAACAGGCCTTTGACACAACTTGAGGAGTCCCAATCTGTTGGCCACTTGAGAGAGGCTTCTAACAAGGCAAACAATGCAGAGTTGAAACTATTTCTTGAAGTGGAACTTACCACGTGACCTTCACCCACAACCACTACCCGAAAAGACAAAGGATGAAATACTGCTCTTTCTTCAAACTTTATGACCCTGAGAAAGAAGAACTCCGTTTTGTTGGCAGGAGTTTTGTGAAGGCAGTGGGCAAGCCAACAGAAATTTTAAGAAGCTTGAATGAGATGGCTGGTTTTTCCCCAAATGAAGAAATTGAGCTTTTTGAGGAAATAAAGTTTGAACCAAATGTTATGTGTGAGCATGTTGACAAGAGACTTACATTTCGTGGCAGCCAACTTGAAGATGGAGATATTATCTGCTACCAAAAGGTTCTTTCAAGGGAAGAAGAGGAACGCTATAGATATCCAGATGTTCCATCATTTCTTGAATATGTTCACAACCGACAGATTGTTCATTTTCGTTGCCTGGATAAGCCAAAGGAAGATGAATTTTGTCTTGAACTATCAAAACTCTCTACATATGATGATGTTGTGGAGAGAGTCGCACAGCAACTTGGACTAGATGATCCTTCGAAAATCAGACTTACATCACACAATTGCTATTCTCAGCAACCTAAACCCCAACCTATTAAATATCGTGGCGTGGATCACTTATCTGATATGCTAGTTCATTACAATCAGTCTTCTGATATCTTGTACTATGAAGTCTTGGACATACCACTGCCAGAGTTGCAAGGCTTAAAATCATTAAAAGTAGCTTTTCATCATTCAACAAAAGATGAAGTATCTGTTCACAGTATACGATTGCCCAAACAAAGTACTGTTGGGGATGTTATTAATGAGCTGAGGACAAAGGTTGAGCTGTCACACGCTACCGCTGAAATTCGATTGCTCGAGGTGTTTTATCACAAAATTTACAAGATTTTTCCACTAAATGAAAAGATTGAGAACATAAATGATCAGTATTGGACATTACGAGCAGAGGAGGTCCCAGAAGAGGAGAAGAATCTAGGCCCTCATGATCGTTTAATCCATGTTTATCATTTTACAAGAGATGCGTCGCAGAATCACATGGTCCAAAATTTTGGAGAGCCTTTCTTTCTGGTCATTAGGGAAGGTGAAACTTTATCAGATGTTAAGGAAAGAATCCAGAAGAAGTTGCAGGTTCCTGATGAAGAATTTTCCAAATGGAAGTTTGCATTCCTCTCCTTGGGTCGCCCAGAGTACCTTCAGGATACGGATGTTATTTCGAGTCGTTTTCAGCGGAGAGATGTTTATGGAGCTTGGGAGCAATATCTTGGATTGGAGCATTCAGATAGTGCACCCAAACGATCTCATCAAACCAACCAGAATCGTCACACTTTTGAAAAGCCTGTAAAGATATACAACTGAAAGAAAATCTAAAATGGTGATTTCTTTATACTTGCAATGGAAGAGAGAGAATTGTACCATTTATAGTTGCCTCCATTTTGTTAGAATTTAGAAACTTAGATGGTACTTGGGAAGGTGAATGCAGTCGTTTATGATATAGTGAAGAGAAGTCAGCATCTCTATATTAATTGATGCCATATCTGTGGCTTGTCAAAGTTATAGAAAACAATGTCTTGTTTGGTTCCCCAATTAGAGAACTCAGATTCAGATCAGTATTAGACCAGCAGATTTTTATAGACGACTGTATTTTCATGTCAGAGCTGCTGACTGGTGGTGTCCAATTATTTCTTTGATTATATTTTAATGTCAAATTAAAACTATGCTTACCCTGCCTTGAAACATGCTTTCCAATATCCGGGATGTGGTCGGCAGCATAGTTTATGGTATTGATTGCCCACCCCACAGTGAGCAACTATGTAAGCAAAGTTGTGCATAGCACATTTTGGGGGGTTTCTCCAAGCTGGTTTCATTTTGTAGGGTCTCCTGAGACCACTTCTCAATTTTGTTGTAATGTAATGTTACAATCTGGAAATTTCAGTCTTGTATGAGGAAGCTGCAGATTGTGACATATATTGTTTCCCTTTTGAATGTATTATTGTATTATTTGTGATGGAAAATAGGTATCATATATTCTGAGCTTGTCCACCTGTTTTGCTAGCTATGCTTAGCTGTTACATATTTGATTTAGATTTAGCA

Ace file of the UniGene sp_v3.0_unigene3305

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	ubiquitin carboxyl-terminal hydrolase 12 [Arabidopsis thaliana] gb\|AAK25908.1\|AF360198_1 putative ubiquitin-specific protease UBP12 [Arabidopsis thaliana] gb\|AAN13185.1\| putative ubiquitin-specific protease UBP12 [Arabidopsis thaliana] gb\|AED91040.1\| ubiq	-	-	0.0	81%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	58%
Sma3	Ubiquitin carboxyl-terminal hydrolase	-	-	1.959e-11	-

Source	ECs	Term	Type	e value	Identity
Sma3	Ubiquitin thiolesterase.	EC:3.1.2.15	-	1.661e-20	-

Source	Gene names
Sma3	At3g11910; At3g58250; At3g58270; At5g06600; CHLREDRAFT_121621; CM0545.290.nc; F15M7.13; F26K24.20; F9D24.160; F9D24.180; GSVIVT00002647001; GSVIVT00017456001; GSVIVT00027113001; GSVIVT00038368001; LOC_Os11g36470; LOC_Os12g30540; MEC18.1; MICPUN_69054; NtN

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	double-stranded DNA binding	GO:0003690	Molecular Function	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	ubiquitin thiolesterase activity	GO:0004221	Molecular Function	-
Sma3	peptidase activity	GO:0008233	Molecular Function	-
Sma3	cysteine-type peptidase activity	GO:0008234	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	hydrolase activity	GO:0016787	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	DNA topological change	GO:0006265	Biological Process	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, GATA-type	IPR000679	-	-
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2	IPR001394	-	-
Sma3	MATH	IPR002083	-	-
Sma3	Tify	IPR010399	-	-
Sma3	CCT domain	IPR010402	-	-
Sma3	TRAF-type	IPR013322	-	-
Sma3	Small acid-soluble spore protein, alpha/beta-type, conserved site	IPR018126	-	-
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site	IPR018200	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G06600.1	UBP12 ubiquitin-specific protease 12 chr5:2019545-2027834 REVERSE LENGTH=1116	86%
RefSeq	Arabidopsis thaliana	NP_850783.1	ubiquitin carboxyl-terminal hydrolase 12 [Arabidopsis thaliana]	86%
RefSeq	Populus trichocarpa	XP_002316470.1	predicted protein [Populus trichocarpa]	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NSM8

Fln msg: your sequence is longer than subject: 676 - 123

Fln protein: MTMMAPPPLDQEEDEMLVPHAEFNDGAQPMEVAGQGETVSTAENQPPDDPPSSRFTWAVDNFSRLNVKKHYSEVFTVGGYKWRVLIFPKGNNVDHLSMYLDVADSATLPYGWSRYAQFSLAIVNQISPKYSIRKDTQHQFNARESDWGFTSFMPLGDVYDHSKGYLVNDTLIIEADVVVRRVIDYWSYDSKKETGYVGLKNQGATCYMNSLLQTLYHIPYFRKAVYHMPTTENDMPSSSIPLALQSLFYKLQYSDTSVATKELTKSFGWDTYDSFMQHDVQELNRVLSEKLEDKMKGTVVEGTIQQLFEGHHMNYIECINVDYKSTRKESFYDLQLDVKGCRDVYASFDKYVEVERLEGDNKYHAEQYALQDARKGVLFIDFPPVLQLQLKRFEYDFMRDTMVKINDRYEFPLQLDLDRDDGKYLSPDADRSVRNLYTLHSVLVHSGGVHGGHYYAFIRPTLSDQWFKFDDERVTKEDIKRALEEQYGGEEELPQTNPGFNNTPFKFTKYSNAYMLVYIRESDKDKIICNVDEKDIAEHLRVRLKKEQEEKEHKRKEKAEAHLYTIIKVARDEDLAEQIGKDIFFDLVDHDKVRSFRIQKQTPFTVFKEEVAKEFGIPVQFQRFWLWAKRQNHTYRPNRPLTQLEESQSVGHLREASNKANNAELKLFLEVELTT*

Protein Length: 677

Fln nts: AGGTTTTTTCCAAGGATCTTTATTCGGATCGATCGATCCAGAAAGGATTTGAAGGTAAGTGGTTTTGTTATTGGAGGTGGTTGACATCCGCAGAGGGCGATTTGCATCAACAGATATACCCTCAAACGCA_-_ATGACAATGATGGCCCCTCCTCCTTTAGATCAGGAAGAGGACGAAATGCTGGTCCCGCATGCCGAGTTCAATGACGGGGCTCAGCCCATGGAAGTTGCAGGGCAAGGAGAGACGGTTAGTACCGCGGAGAATCAACCCCCGGATGATCCTCCTTCCTCTCGATTTACCTGGGCTGTTGATAATTTTTCGAGGTTAAATGTGAAAAAGCATTACTCAGAAGTTTTCACGGTGGGAGGTTACAAATGGCGGGTGCTAATATTTCCGAAGGGAAACAATGTGGATCACCTATCGATGTACTTGGATGTGGCGGATTCTGCTACATTGCCTTATGGTTGGAGCAGATATGCACAGTTTAGCTTGGCAATTGTTAATCAGATTAGCCCTAAATATTCCATCCGGAAAGATACACAACATCAGTTCAATGCCCGAGAGAGTGACTGGGGTTTCACATCGTTTATGCCGCTGGGAGATGTGTATGATCATTCAAAAGGTTATCTGGTGAATGATACTCTCATAATAGAAGCGGACGTTGTTGTTCGCAGAGTAATTGATTATTGGTCCTATGACTCAAAGAAGGAAACAGGTTATGTTGGGCTCAAGAATCAAGGAGCAACATGCTACATGAACTCACTTCTTCAGACATTATATCACATTCCTTACTTCAGAAAGGCCGTGTATCATATGCCAACAACTGAAAATGACATGCCATCTAGCAGCATTCCATTGGCTTTACAGAGTTTGTTTTATAAGCTCCAGTATAGTGACACCAGTGTTGCGACAAAGGAGTTAACGAAATCTTTTGGATGGGACACATATGATTCTTTTATGCAACATGATGTTCAGGAGTTGAACAGAGTGTTATCTGAGAAGTTAGAAGACAAAATGAAGGGGACAGTTGTTGAGGGCACAATACAGCAACTGTTTGAGGGCCATCATATGAATTATATTGAATGCATAAATGTAGATTACAAGTCAACAAGGAAAGAGTCATTTTATGATCTGCAGCTTGATGTCAAAGGTTGTCGAGATGTCTATGCTTCATTTGATAAATATGTTGAAGTGGAACGCCTTGAAGGGGATAATAAATATCATGCTGAGCAATATGCTTTACAGGATGCAAGGAAGGGTGTTCTTTTCATTGATTTTCCTCCTGTACTACAACTTCAACTGAAGCGCTTTGAATATGACTTCATGCGAGACACAATGGTTAAGATAAATGATCGCTATGAGTTTCCTTTGCAACTTGATCTTGATAGAGACGATGGGAAATATCTTTCTCCAGATGCAGATAGAAGTGTCCGCAATTTATATACTCTTCACAGTGTTTTAGTACACAGCGGAGGTGTTCATGGGGGCCATTACTATGCTTTTATCCGTCCAACTCTTTCAGACCAGTGGTTCAAGTTTGATGATGAGCGTGTAACAAAGGAAGACATAAAGAGGGCACTAGAGGAGCAATATGGCGGGGAGGAAGAGCTACCTCAGACAAATCCAGGTTTCAACAACACTCCATTTAAGTTTACAAAATACTCCAATGCTTACATGCTTGTTTATATCAGAGAGAGTGACAAGGATAAAATTATCTGCAATGTTGATGAGAAGGATATAGCAGAGCATCTTAGGGTAAGGCTAAAGAAAGAGCAAGAGGAGAAAGAGCACAAAAGAAAAGAGAAGGCTGAGGCACACCTTTATACCATCATAAAGGTTGCTCGTGATGAAGATCTTGCTGAGCAGATTGGAAAGGACATATTTTTTGATCTTGTTGACCATGACAAAGTTCGTAGTTTTCGGATTCAGAAACAAACACCATTTACTGTTTTCAAGGAAGAGGTGGCAAAGGAATTTGGTATCCCTGTTCAATTTCAGCGTTTCTGGTTATGGGCAAAACGACAGAACCATACATATCGCCCCAACAGGCCTTTGACACAACTTGAGGAGTCCCAATCTGTTGGCCACTTGAGAGAGGCTTCTAACAAGGCAAACAATGCAGAGTTGAAACTATTTCTTGAAGTGGAACTTACCACGTGA___CCTTCACCCACAACCACTACCCGAAAAGACAAAGGATGAAATACTGCTCTTTCTTCAAACTTTATGACCCTGAGAAAGAAGAACTCCGTTTTGTTGGCAGGAGTTTTGTGAAGGCAGTGGGCAAGCCAACAGAAATTTTAAGAAGCTTGAATGAGATGGCTGGTTTTTCCCCAAATGAAGAAATTGAGCTTTTTGAGGAAATAAAGTTTGAACCAAATGTTATGTGTGAGCATGTTGACAAGAGACTTACATTTCGTGGCAGCCAACTTGAAGATGGAGATATTATCTGCTACCAAAAGGTTCTTTCAAGGGAAGAAGAGGAACGCTATAGATATCCAGATGTTCCATCATTTCTTGAATATGTTCACAACCGACAGATTGTTCATTTTCGTTGCCTGGATAAGCCAAAGGAAGATGAATTTTGTCTTGAACTATCAAAACTCTCTACATATGATGATGTTGTGGAGAGAGTCGCACAGCAACTTGGACTAGATGATCCTTCGAAAATCAGACTTACATCACACAATTGCTATTCTCAGCAACCTAAACCCCAACCTATTAAATATCGTGGCGTGGATCACTTATCTGATATGCTAGTTCATTACAATCAGTCTTCTGATATCTTGTACTATGAAGTCTTGGACATACCACTGCCAGAGTTGCAAGGCTTAAAATCATTAAAAGTAGCTTTTCATCATTCAACAAAAGATGAAGTATCTGTTCACAGTATACGATTGCCCAAACAAAGTACTGTTGGGGATGTTATTAATGAGCTGAGGACAAAGGTTGAGCTGTCACACGCTACCGCTGAAATTCGATTGCTCGAGGTGTTTTATCACAAAATTTACAAGATTTTTCCACTAAATGAAAAGATTGAGAACATAAATGATCAGTATTGGACATTACGAGCAGAGGAGGTCCCAGAAGAGGAGAAGAATCTAGGCCCTCATGATCGTTTAATCCATGTTTATCATTTTACAAGAGATGCGTCGCAGAATCACATGGTCCAAAATTTTGGAGAGCCTTTCTTTCTGGTCATTAGGGAAGGTGAAACTTTATCAGATGTTAAGGAAAGAATCCAGAAGAAGTTGCAGGTTCCTGATGAAGAATTTTCCAAATGGAAGTTTGCATTCCTCTCCTTGGGTCGCCCAGAGTACCTTCAGGATACGGATGTTATTTCGAGTCGTTTTCAGCGGAGAGATGTTTATGGAGCTTGGGAGCAATATCTTGGATTGGAGCATTCAGATAGTGCACCCAAACGATCTCATCAAACCAACCAGAATCGTCACACTTTTGAAAAGCCTGTAAAGATATACAACTGAAAGAAAATCTAAAATGGTGATTTCTTTATACTTGCAATGGAAGAGAGAGAATTGTACCATTTATAGTTGCCTCCATTTTGTTAGAATTTAGAAACTTAGATGGTACTTGGGAAGGTGAATGCAGTCGTTTATGATATAGTGAAGAGAAGTCAGCATCTCTATATTAATTGATGCCATATCTGTGGCTTGTCAAAGTTATAGAAAACAATGTCTTGTTTGGTTCCCCAATTAGAGAACTCAGATTCAGATCAGTATTAGACCAGCAGATTTTTATAGACGACTGTATTTTCATGTCAGAGCTGCTGACTGGTGGTGTCCAATTATTTCTTTGATTATATTTTAATGTCAAATTAAAACTATGCTTACCCTGCCTTGAAACATGCTTTCCAATATCCGGGATGTGGTCGGCAGCATAGTTTATGGTATTGATTGCCCACCCCACAGTGAGCAACTATGTAAGCAAAGTTGTGCATAGCACATTTTGGGGGGTTTCTCCAAGCTGGTTTCATTTTGTAGGGTCTCCTGAGACCACTTCTCAATTTTGTTGTAATGTAATGTTACAATCTGGAAATTTCAGTCTTGTATGAGGAAGCTGCAGATTGTGACATATATTGTTTCCCTTTTGAATGTATTATTGTATTATTTGTGATGGAAAATAGGTATCATATATTCTGAGCTTGTCCACCTGTTTTGCTAGCTATGCTTAGCTGTTACATATTTGATTTAGATTTAGCA

Fln Alignment:

Contig3305___QGETVSTAENQPPDDPPSSRFT--WAVDNFSRLNVKKHYSEVFTVGGYKWRVLIFPKGNNVDHLSMYLDVADSATLPYGWSRYAQFSLAIVNQISPKYSIRK
A9NSM8______________QSETVRVTEIIQFD-----KFTCAWAIEHFSSLDAERHYSDIFTVGGHKWRLLIFPKGNNVDYLSIYLDVPDSATLPHGCSKYAEFSLAVVNLTDPQLTIRK

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
790	33	66			0.997452
792			33	66	0.997452
793		66		33	0.997452
1000	12		87		0.992554
1001	12			87	0.992554
1003	87		12		0.992554
1004			87	12	0.992554
1135	18		81		0.999994
1211	83		16		0.999991
4158		20		80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain