SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3302

Length: 1270 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene3302

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	peptide alpha-N-acetyltransferase [Arabidopsis thaliana] dbj\|BAB10599.1\| unnamed protein product [Arabidopsis thaliana] gb\|AAK96745.1\| Unknown protein [Arabidopsis thaliana] gb\|AAL47392.1\| unknown protein [Arabidopsis thaliana] gb\|AAM64579.1\| silencing gr	-	-	85%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	98%
Sma3	Putative uncharacterized protein	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	N-acetyltransferase activity	GO:0008080	Molecular Function	0.0	-
Sma3	metabolic process	GO:0008152	Biological Process	0.0	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Acyl-CoA N-acyltransferase	IPR016181	-	0.0	-
Sma3	GNAT domain	IPR000182	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G13780.1	Acyl-CoA N-acyltransferases (NAT) superfamily protein chr5:4447610-4448603 REVERSE LENGTH=192	85%
RefSeq	Arabidopsis thaliana	NP_196882.1	peptide alpha-N-acetyltransferase [Arabidopsis thaliana]	85%
RefSeq	Populus trichocarpa	XP_002298415.1	predicted protein [Populus trichocarpa]	88%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NSV4

Fln msg:

Fln protein: MVCIRQATIDDLLAMQTCNLMCLPENYQMKYYFYHILSWPQLLYVAEDYNKKIVGYVLAKMEEESTECHGHITSLAVLRTHRKLGLATKLMTAAQKAMQEVFGAEYVSLHVRKSNRAAFHLYTQTLGYKIHDIEAKYYADGEDAYDMRKQLRVKSDGKHHHHHHHAFWSVLWRRRWRWEIAVCS*

Protein Length: 186

Fln nts: TACCACTGCTTGCAGTGGTATCAACGCAGAGTACGCGGGGGTTAAGCAGGTTCGTCTTCGTGAAACCCTATCCTGCAAAGCGGAAGTCTGATCCCTCAGTGGCAGTTTCAGTGGCAGTTATCCTGGGAGAACCAGAGGGAGCAAGCAAAAATAAAGAATAAAAAAACCAGGAGAAGTATCTAACAGAGAACACTAAGTCGGGAGGATTTCTGCACATAAACTCTGATACACAATATATATTCCAGAGTTTAAGCACAATATATGTTCTAGGTTTATACCCACCGTGGTTTGCAGCC_-_ATGGTTTGCATTCGTCAAGCCACTATAGATGACCTGCTGGCAATGCAGACATGCAATCTGATGTGTCTGCCGGAGAATTACCAGATGAAGTATTACTTCTACCACATCCTCTCATGGCCGCAGCTTCTGTACGTGGCCGAGGATTACAACAAGAAAATTGTGGGTTATGTTCTGGCGAAAATGGAAGAGGAGTCCACGGAATGCCACGGCCACATAACCTCTCTGGCTGTGTTGCGTACGCACCGCAAACTGGGCCTTGCAACGAAGCTCATGACCGCAGCCCAGAAGGCAATGCAGGAGGTTTTTGGGGCAGAGTATGTTTCTCTCCATGTCCGCAAGAGCAACCGGGCGGCGTTTCACCTGTATACCCAAACACTGGGCTACAAAATTCACGATATTGAGGCTAAGTACTATGCTGATGGCGAGGATGCCTATGATATGCGCAAACAGCTGAGAGTGAAGTCTGATGGTAAGCATCATCATCATCATCATCATGCATTCTGGAGTGTGCTGTGGCGGAGACGGTGGCGATGGGAAATTGCAGTCTGCAGCTGA___TAAAAAGAGCAAGGAATGAACCTGAATTGGAAGTGAAGCTGTTGAGATTTGCGGCCTTAGCGACCGCTTTTGTTATGGTTAGCACATTGAACTCTTTTGCAGTAGATGTTTGGCCTGCAAATGATGATATGGATTCATATCGTTATTATGCTATTTTGCCCTTTTAATTTACCAGTCCTTAAGTTGTCTCCAAGAGCTACGTATTTCTTCCTGTTGTTGCTACTGGAATTCATTGCCTACTGTGAGATCGTGTTGAACTCTTTTCTTATAGATACTTGACTTACAAATGCTGATAATTTATTCATGTTGTGCTATTTGTCATTTATTGTATGACAGCCATTCAGTTGTCTTAAAAAATTATCTCTTGTTGTTTTTGCTACTGGATTCCATTGGTTTCTTTGAAACATATCATATCTGCA

Fln Alignment:

Contig3302___MVCIRQATIDDLLAMQTCNLMCLPENYQMKYYFYHILSWPQLLYVAEDYNKKIVGYVLAKMEEESTECHGHITSLAVLRTHRKLGLATKLMTAAQKAMQEVFGAEYVSLHVRKSNRAAFHLYTQTLGYKIHDIEAKYYADGEDAYDMRKQLRVKSDGK
A9NSV4______________MVCIRQATIDDLLAMQTCNLMCLPENYQMKYYFYHILSWPQLLYVAEDYNKKIVGYVLAKMEEESTECHGHITSLAVLRTHRKLGLATKLMTAAQKAMHEVFGAEYVSLHVRKSNRAAFHLYTQTLGYKIHDIEAKYYADGEDAYDMRKQLKVKSDGK

SNPs (tot: 20)

Position	A %	C %	G %	T %	Probability
44	75		25		0.996473
45	75		25		0.996473
47		75	25		0.996473
49	20		80		0.995493
50	20		80		0.995493
52			20	80	0.995493
110	38			61	1.0
111		61		38	1.0
112	61	38			1.0
113		38	61		1.0
117		61	38		1.0
120	38			61	1.0
121	38			61	1.0
1048	76		23		1.0
1154		47		52	1.0
1165		84		15	1.0
1171	50		50		1.0
1181			90	9	0.999872
1186	90		10		0.999898
1195	20	80			1.0

SSRs (tot: 1)

Start position	End position	Sequence	Length
771	791	CAT CAT CAT CAT CAT CAT CAT	21

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain