SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3276

Length: 2828 nt

UniGene Fasta

>sp_v3.0_unigene3276
ATAGGAATTCAAACAACAAAAGCCTAGCCTGCCCGGCTGAAGGTCGGATGGACTGGTCTGGGCAGAGCAGGGCAGAACAGAGCAGATAGCGTGTGATTAAGCTCTAACAATAACAATGGGAGCAAAGTATTCAGGAGGCATACCATCTATTCTCAGATATTCCCAGCAGCTGCTGCTCACTAGACCATCACTCACAAAATCTTCACTGAGACCTGTCATTCCCCGAAGAGGAAGTGCCCTTAAATCAGGGGCACACTCTGAATTGTATTACAAAATCAGTCCCTTGTTCATCTCTGGATGGCCTCAGATTATAATCCCAAAGCGCCTTTGCACACAAACATCTTCTTCTGCTATCTTATCAACATTTCCTTATTGTGATTCCATATCTGGAGGGACGAATAATGTCACCCGAAGGAAGAGGAAAGAAAGGAAAAGAGACAGCCGAGAAGGGCAGCTGACATTCGGTCTGGACATGTGTTCGAGAGACGGAGACGTGGTAGAAGCCCTAAATTTGTATGACAGAGCGGTAAAAGAGGGACTAAAGACAAATCAGTACCAGTACAATGTGCTACTCTATGTATGCTCGGCCGCTGCCATGGGCGTCCTCAGGCCTACCGACAGAGCCAAGGATCAAAATCTCGCCAATTCGGAGGAGGTTATTGAAGAGGACAATGCTAAAATTAGCGACGAGATCGGGCGCTTGGCACTGAGGAGAGGATTCGAGATATACAGCCAGATGGAAATCGATAAAATCCCTCCAACCGAGGCCACCTTCACGGCCGTCGCCAGATTGGCCGCAGCTAAAGAGGACGGGGCCTTGGCATTCGATTTGGTGAAGAAGATGGCGGAATTTAATATTCCTCCAAGGCTGAGGTCATATGGGCCTGCGCTTTTTGCCCTCTGTAAGAGTAGGGATGCCGGGATGGCTTATGAGGTGGATGCCCATATGACCCTCTCGGGTGTTCAACCCGAAGAGCCAGAGCTGAGGGCACTGTTGAAAGTCAGTGTGGACGCCCTCAGAGAAGAGAAGGTTTATTCTCTGTTGCACAGACTGAGGACCACTGCAAGGCAGGTGTCACAAAATACATCTGAGGTAATTGAGCAGTGGTTTAATGGTCAGGTTGCTGGGAAGCTAGGGCAGACTGTCTGGGACCGAAAGAAGATCAGGGAAGCCACCATTGCGGGTGGTGGAGGGTGGCATGGACAGGGCTGGTTGGGGACCGGCGATTGGAGAGTGAAGCGCACCGCTATGAACCCAGACGGTGTTTGCCCATGTTGCCAGGAGCGGTTGGTCACTATTGATATCGATCCAGAGGAGACGGAGAACTTTGCAAGGTCTGTTGCGGCATTGGCGTGCGAGAGGGAGTTAGAGGCAAAGTTCGTTAGTTTTCAGAAATGGCTGGACGAACATGGCCCGTTTGAAGCAGTCGTGGATGGTGCAAATGCAGGCCTTTTTCTGCAAAGTAAATATGCCTTCAGTTTTTCTCAGATAAATGCTGTTGCCAATGAGCTAAAACAAATGAGTCAGTCAAAGAAAATGCCACTCATTATCTTGCACAACAGACGTACAAGAGGACAACCTGCCGATAGTCCTGGAAATAAACAATTAATTGTGAACTGGAGAAAAGCTGGTGCACTTTACACCACACCAACAGGATCAAATGATGACTGGTACTGGTTATATGCTGCTGTGAGATTAAAATGCCTGGTTGTGACAGATGATGAAATGAGAGACCATATATTTGAGTTGCTGGGAAATAAATTTTTCCCAGTATGGAAGGAAAGGCATCAGGTTAGGCTTACTATGACAAGCAGAGGTCCAGGGTTCCGTATGCCACCTCCATATTCAATTGTAATTCAGGAATCTGAGATGGGCTCGTGGCACATACCCATAGTGGGCGGAGATGACATTGAGACCCCAAGAATCTGGATGTGTATTACAAGGCCTAAACAGATTGAGCTTGAAAAGAGCAACATTCCTGCATCTTACGAAAGGAGTGCTCAGAGTTTCTCGCCACTCTCAGCTTTTAAAATTACTCGTGGAGAAGCAATTGATGCAGCAAACATTCATATGAAAATAAGAGATCCTTCGAGTGCTTCTGGCCGAGCTTTTCAATCAACGAGTACGCGGAGAGAGCGGACATTGTCCTCGTCACCCCCTTCTTCTGCTCCACCGTCAACAGGGGGGACGATTCGAACAGTTAAATTGCATGTGGATCACCCGATCTACCCAGTTGGGGAGGAAAGAAATTAATTTTGTCTCCTCCATGCAGCTTTGTTATAGAAAATTTTGGTCTAACCTTGACCCTGTAGAACGGATGCTAGCTCTCATGAATTCATGTTGGAAAACAAGAAAAGAGATTTTTTTAGCAGGTACACAAACGCCTGTATGCAACCAATCAAACTTCGAAGATAGTTTTTCATGAAAAGCATTGTACATTAAAACTATGCCCATAGCATGACAGCACTAATTATGGTAAACCTGTAACACAGCTCTGTAACACAGCTTCCTTTCTGTTGTTTAGCTCAGATATGGGCATGGTAGTTGACATATTCTTGGCACACGCTGCCAGTGAATTTTTATTCATTTATTGGGCATAACAATGCCTCATTCAAAGATAGAAAGCAAGCAGAAAATCCCATAGGTGCAGAAAATCCAAAGTCACCTATTTGTTTTTCTGTTGTAACTTTATTTATGCTCTACAATTTGGAGAAATGATTCGAACTCTTAAATGCTTGAAGGGGATACAGCAGTCTGATTTAGAGATCTCTGTAACAGATTACAGATAAGTATATTATGTTATATATAATAATGTGAATGATAATTG

Ace file of the UniGene sp_v3.0_unigene3276

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Multidrug resistance pump, putative n=1 Tax=Ricinus communis RepID=B9SJ92_RICCO	-	-	0.0	49%
FL-Next	sp=Pentatricopeptide repeat-containing protein At2g32230, mitochondrial; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	55%
Sma3	Multidrug resistance pump, putative	-	-	5.046e-09	-

Source	Gene names
Sma3	At2g32230; At4g21900; F22D22.2; GSVIVT00016721001; GSVIVT00025789001; GSVIVT00031551001; GSVIVT00035352001; GSVIVT00038490001; OJ1656_A11.5; OSJNBb0020J19.15; Os01g0968000; Os02g0273800; Os04g0692500; OsI_06719; OsI_18054; OsJ_04901; OsJ_06217; OsJ_16752;

Source	GOs	Term	Type	Identity
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	membrane	GO:0016020	Cellular Component	-
Sma3	drug transmembrane transporter activity	GO:0015238	Molecular Function	-
Sma3	antiporter activity	GO:0015297	Molecular Function	-
Sma3	drug transmembrane transport	GO:0006855	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Multi antimicrobial extrusion protein	IPR002528	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	Putative S-adenosyl-L-methionine-dependent methyltransferase	IPR004159	-	-
Sma3	F-box associated interaction domain	IPR017451	-	-
Sma3	Carbohydrate kinase, FGGY, conserved site	IPR018483	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G32230.1	PRORP1 proteinaceous RNase P 1 chr2:13679608-13681756 REVERSE LENGTH=572	55%
RefSeq	Arabidopsis thaliana	NP_850186.1	proteinaceous RNase P 1 [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002305261.1	predicted protein [Populus trichocarpa]	55%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q66GI4

Fln msg: your sequence is longer than subject: 713 - 572

Fln protein: MGAKYSGGIPSILRYSQQLLLTRPSLTKSSLRPVIPRRGSALKSGAHSELYYKISPLFISGWPQIIIPKRLCTQTSSSAILSTFPYCDSISGGTNNVTRRKRKERKRDSREGQLTFGLDMCSRDGDVVEALNLYDRAVKEGLKTNQYQYNVLLYVCSAAAMGVLRPTDRAKDQNLANSEEVIEEDNAKISDEIGRLALRRGFEIYSQMEIDKIPPTEATFTAVARLAAAKEDGALAFDLVKKMAEFNIPPRLRSYGPALFALCKSRDAGMAYEVDAHMTLSGVQPEEPELRALLKVSVDALREEKVYSLLHRLRTTARQVSQNTSEVIEQWFNGQVAGKLGQTVWDRKKIREATIAGGGGWHGQGWLGTGDWRVKRTAMNPDGVCPCCQERLVTIDIDPEETENFARSVAALACERELEAKFVSFQKWLDEHGPFEAVVDGANAGLFLQSKYAFSFSQINAVANELKQMSQSKKMPLIILHNRRTRGQPADSPGNKQLIVNWRKAGALYTTPTGSNDDWYWLYAAVRLKCLVVTDDEMRDHIFELLGNKFFPVWKERHQVRLTMTSRGPGFRMPPPYSIVIQESEMGSWHIPIVGGDDIETPRIWMCITRPKQIELEKSNIPASYERSAQSFSPLSAFKITRGEAIDAANIHMKIRDPSSASGRAFQSTSTRRERTLSSSPPSSAPPSTGGTIRTVKLHVDHPIYPVGEERN*

Protein Length: 714

Fln nts: ATAGGAATTCAAACAACAAAAGCCTAGCCTGCCCGGCTGAAGGTCGGATGGACTGGTCTGGGCAGAGCAGGGCAGAACAGAGCAGATAGCGTGTGATTAAGCTCTAACAATAACA_-_ATGGGAGCAAAGTATTCAGGAGGCATACCATCTATTCTCAGATATTCCCAGCAGCTGCTGCTCACTAGACCATCACTCACAAAATCTTCACTGAGACCTGTCATTCCCCGAAGAGGAAGTGCCCTTAAATCAGGGGCACACTCTGAATTGTATTACAAAATCAGTCCCTTGTTCATCTCTGGATGGCCTCAGATTATAATCCCAAAGCGCCTTTGCACACAAACATCTTCTTCTGCTATCTTATCAACATTTCCTTATTGTGATTCCATATCTGGAGGGACGAATAATGTCACCCGAAGGAAGAGGAAAGAAAGGAAAAGAGACAGCCGAGAAGGGCAGCTGACATTCGGTCTGGACATGTGTTCGAGAGACGGAGACGTGGTAGAAGCCCTAAATTTGTATGACAGAGCGGTAAAAGAGGGACTAAAGACAAATCAGTACCAGTACAATGTGCTACTCTATGTATGCTCGGCCGCTGCCATGGGCGTCCTCAGGCCTACCGACAGAGCCAAGGATCAAAATCTCGCCAATTCGGAGGAGGTTATTGAAGAGGACAATGCTAAAATTAGCGACGAGATCGGGCGCTTGGCACTGAGGAGAGGATTCGAGATATACAGCCAGATGGAAATCGATAAAATCCCTCCAACCGAGGCCACCTTCACGGCCGTCGCCAGATTGGCCGCAGCTAAAGAGGACGGGGCCTTGGCATTCGATTTGGTGAAGAAGATGGCGGAATTTAATATTCCTCCAAGGCTGAGGTCATATGGGCCTGCGCTTTTTGCCCTCTGTAAGAGTAGGGATGCCGGGATGGCTTATGAGGTGGATGCCCATATGACCCTCTCGGGTGTTCAACCCGAAGAGCCAGAGCTGAGGGCACTGTTGAAAGTCAGTGTGGACGCCCTCAGAGAAGAGAAGGTTTATTCTCTGTTGCACAGACTGAGGACCACTGCAAGGCAGGTGTCACAAAATACATCTGAGGTAATTGAGCAGTGGTTTAATGGTCAGGTTGCTGGGAAGCTAGGGCAGACTGTCTGGGACCGAAAGAAGATCAGGGAAGCCACCATTGCGGGTGGTGGAGGGTGGCATGGACAGGGCTGGTTGGGGACCGGCGATTGGAGAGTGAAGCGCACCGCTATGAACCCAGACGGTGTTTGCCCATGTTGCCAGGAGCGGTTGGTCACTATTGATATCGATCCAGAGGAGACGGAGAACTTTGCAAGGTCTGTTGCGGCATTGGCGTGCGAGAGGGAGTTAGAGGCAAAGTTCGTTAGTTTTCAGAAATGGCTGGACGAACATGGCCCGTTTGAAGCAGTCGTGGATGGTGCAAATGCAGGCCTTTTTCTGCAAAGTAAATATGCCTTCAGTTTTTCTCAGATAAATGCTGTTGCCAATGAGCTAAAACAAATGAGTCAGTCAAAGAAAATGCCACTCATTATCTTGCACAACAGACGTACAAGAGGACAACCTGCCGATAGTCCTGGAAATAAACAATTAATTGTGAACTGGAGAAAAGCTGGTGCACTTTACACCACACCAACAGGATCAAATGATGACTGGTACTGGTTATATGCTGCTGTGAGATTAAAATGCCTGGTTGTGACAGATGATGAAATGAGAGACCATATATTTGAGTTGCTGGGAAATAAATTTTTCCCAGTATGGAAGGAAAGGCATCAGGTTAGGCTTACTATGACAAGCAGAGGTCCAGGGTTCCGTATGCCACCTCCATATTCAATTGTAATTCAGGAATCTGAGATGGGCTCGTGGCACATACCCATAGTGGGCGGAGATGACATTGAGACCCCAAGAATCTGGATGTGTATTACAAGGCCTAAACAGATTGAGCTTGAAAAGAGCAACATTCCTGCATCTTACGAAAGGAGTGCTCAGAGTTTCTCGCCACTCTCAGCTTTTAAAATTACTCGTGGAGAAGCAATTGATGCAGCAAACATTCATATGAAAATAAGAGATCCTTCGAGTGCTTCTGGCCGAGCTTTTCAATCAACGAGTACGCGGAGAGAGCGGACATTGTCCTCGTCACCCCCTTCTTCTGCTCCACCGTCAACAGGGGGGACGATTCGAACAGTTAAATTGCATGTGGATCACCCGATCTACCCAGTTGGGGAGGAAAGAAATTAA___TTTTGTCTCCTCCATGCAGCTTTGTTATAGAAAATTTTGGTCTAACCTTGACCCTGTAGAACGGATGCTAGCTCTCATGAATTCATGTTGGAAAACAAGAAAAGAGATTTTTTTAGCAGGTACACAAACGCCTGTATGCAACCAATCAAACTTCGAAGATAGTTTTTCATGAAAAGCATTGTACATTAAAACTATGCCCATAGCATGACAGCACTAATTATGGTAAACCTGTAACACAGCTCTGTAACACAGCTTCCTTTCTGTTGTTTAGCTCAGATATGGGCATGGTAGTTGACATATTCTTGGCACACGCTGCCAGTGAATTTTTATTCATTTATTGGGCATAACAATGCCTCATTCAAAGATAGAAAGCAAGCAGAAAATCCCATAGGTGCAGAAAATCCAAAGTCACCTATTTGTTTTTCTGTTGTAACTTTATTTATGCTCTACAATTTGGAGAAATGATTCGAACTCTTAAATGCTTGAAGGGGATACAGCAGTCTGATTTAGAGATCTCTGTAACAGATTACAGATAAGTATATTATGTTATATATAATAATGTGAATGATAATTG

Fln Alignment:

Contig3276___SISGGTNNVTXXXXXXXXXDSREGQLTFGLDMCSRDGDVVEALNLYDRAVKEGLKTNQYQYNVLLYVCSAAAMGVLRPTDRAKDQNLANSEEVIEEDNAKISDEIGRLALRRGFEIYSQMEIDKIPPTEXXXXXXXXXXXXKEDGALAFDLVKKMAEFNIPPRLRSYGPALFALCKSRDAGMAYEVDAHMTLSGVQPEEPELRALLKVSVDALREEKVYSLLHRLRTTARQVSQNTSEVIEQWFNGQVAGKLGQTVWDRKKIREATIAXXXXXXXXXXXXXXDWRVKRTAMNPDGVCPCCQERLVTIDIDPEETENFARSVAALACERELEAKFVSFQKWLDEHGPFEAVVDGANAGLFLQSKYAFSFSQINAVANELKQMSQSKKMPLIILHNRRTRGQPADSPGNKQLIVNWRKAGALYTTPTGSNDDWYWLYAAVRLKCLVVTDDEMRDHIFELLGNKFFPVWKERHQVRLTMTSR-GPGFRMPPPYSIVIQESEMGSWHIPIVGGDDIETPRIWMCITRPK
Q66GI4______________SAASPSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLA---------EAATESSPNP------------------GLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSEVATKTGVKKWDVKKIRDAVVSGGGGWHGQGWLGTGKWNVKRTEMDENGVCKCCKEKLVCIDINPVETETFAASLTRLACEREVKANFNQFQEWLERHGPFDAVIDGANMGLVNQR--SFSFFQLNNTVQRCQQISPSKRLPLVILHKSRVNGGPATYPKNRALLEKWKNAGALYATPPGSNDDWYWLYAAVSCKCLLVTNDEMRDHLFQLLGNSFFPRWKEKHQVRISVTREDGLKLNMPPPYSIVIQESEDGTWHVPMSVEDDLQTSRQWLCAKRSK

SNPs (tot: 10)

Position	A %	C %	G %	T %	Probability
606		33		66	0.997452
1089	85		14		0.993533
1102	12		87		0.992554
1798	66			33	0.997452
1800	33		66		0.997452
1801	33	66			0.997452
1805		66	33		0.997452
1990		14		85	0.993533
2030	20			80	0.995493
2031	20			80	0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain