SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3260

Length: 2839 nt

UniGene Fasta

>sp_v3.0_unigene3260
CTTCGATCAAGGGTTTGAAGAAGCAGCAGCAGTATCCAGCTCCAGAAGGCAAGGGTTTTATGACCGTGCAAGGCGGGGCAAGCGCTTATAGAGCGAGAATTGAACGGAACGGTCTGTATTTTATCATTTGAATGTCTTCTGGTCCATTGTTGAACTTTGAGTCGTTGAATGTTGTGAGATATAATCTGTGTCTCAAGTTCTCTGGAGATAAAACGGGGAAAAATCCAGAGATATGAATGTAGAGGTCCCGAAAATATCTTAAATGCAGCGGATCCGATCTCATTGAAGCATGAACTGGTGTAAGATGATCAATCGGGACTAAAGTTTAAGGTATTCCCCAAAAATTTAAGATTTTGGTCAGGCATTTGAGAAATTGTCCCCAAATTCTATCATTATAGAAAATTGAAGGTATTGACTGGAATTTAAAGGGAGTTAGAGATATATCTTGCGTGTTGTTTTGTTATTTTTTTGTTTTTCTTATGGCGGCCATCGAGGGAGATGAGAGAGTGATTGCCACGGCACAGCAGATCGTTAGAAGCTTGGCAACGACAGAAACTATGACCAAAGATATGTTGAGAATTCTCTCAAATTTCGACAATCGATTTTCTAGCATGACGGAACGGCTGGGAACTGATACTGTCAGTGATATTGAAGAGAGGCTTGCTTCTGCAGAAGATGTGGTTTTGCGGTGGGATGGGAATTGCTCTGAAGCTGCAAGAGAATCTATGATATGGGAAGGGCCGCCAGATGAAGCTGCCTCTTACTTACAGGCCGTTGACGAAGTGCAGCGATTGACGGAAAGTCTGGAAAGCATATCGTTGACGGAAAATGATAATGATGAAAGCAATAATAATGATTTTCATGGAAGCGAGCTACTGAACCGTGCCCAGAATGTTCTGCAGATTGCCATGGCTAGGTTAGAAGAGGAATTCCAAAATATTTTGGTTCAGCAGGGTGAAATTTTTGAACCGGAGCGGCTTTACCAGATGATACATGGCCCGGTTTCTAGGGTTTCATTCTGTTCTTCTCGTCACGAAGATATGCCAGACGTTGCATCCATTAGCTCTGGCGAAGGAGAAGGCGATCATGATGAAGATGCCCAAAATCTTCTTGGTAATACCGATAACAGCGGAGACCTCATCATTGATTTAATTCGGCCTGAGGTAATTCCCGACCTCAAAGACATTGCCGAACGTATGGTTGCTTCCAAGTATGAACGAGAGTGCTGTCAGGTTTACAGTACTGTTCGCAGAGAAATCCTCGATGAGGGCTTGCGTCGTCTCGGAATAGAGAAACTCAGTATTGAAGAAATTCAAAAGATGGATTGGGAAACGTTGGAAGGGAAGATCAAGAAATGGAATCAGGCTGTAAAGATTGCTGTCCAGGTTCTTCTTGGCAGTGAGAAGCGCCTTTGCGTTCAGATCTTTGAGCAACTAGGTTCTATTCAAGACACTTGCTTTGTTGAGACTGCAAAGGGTGCTATTATGCAGCTTCTAAATTTTGCTGAGGCGATTGCAATAAGTCGCCGGTCTCCGGAAAGGCTCTTTAGGATTCTGGACATGTATGAGAGCCTCTCGGATCTTCTTCCAGCCATTAAGTCAATTTTTTCGGACGAGTCCTGTGCCTGCATCAGAGCAGAGGCCGATGGAATTTTGACACGATTAGGAGAGGCTGCGAAGGGGACATTTGTTGAATTTGAAAATGCTATTCAGAGGGACACTTCCAAGACTCCAATTCCTGGAGGTGCAATTCATCCTTTGACTCGTTATGTCATGAATTATATAAAGTTCCTTTTTGATTATACAGATATTTTCAAACAGCTTATAGATGAGAAAAAGGAAGCTATTCCAAGGCAGCTTTCAGATGGGTTCATAGAATTTGCTGAAGAAGATCGCCAAGGGGACCTTTCAAACCCAACTCCAAACCAAACTCCATTGGCTCGTCGTCTTTTATCCATTACATCACTGCTCGAGTCGAATCTTGAGGGAAAATCCAGACTCTACAAGGATATTGCTTTGTCTCATCTTTTCATGATGAATAATATTCGTTACATCGTTCAGAAAGTTAAAGGCTCAGAGCTCAGGACTCTTCTTGGTGATGATTGGATTAGAAGGCGCAGTGGGCAGGTACGTCAATATGCTACAAACTATCAAAGATCTGCTTGGAGAAAGGTCTTATCTTGCTTAAGAGATGAAGGAATCTATATTGGTGGAAGCTCTTCCTCCAAGGTTTCAAAGGAGGCTCTCAAGGATAGGTTCAAGAGCTTCAATGCTATGTTTGAAGAGGTATACAGGAATCAGACAGCTTGGTTTGTTCCAGATCCTCAGCTCCGTGTAGAGCTGCGCATCTCTATTGAGGAGAAATTGCTTCCAGCATACCGAGCCTTTTTGGGGAGATTCGGTATGCACTTGGAAGGTGTGAGGCATGCAGAAAGGTACATTAAATACTCACCGGAGGACTTAGAGAATTTTATACTGGATTTGTTTGAAGGCTCACCAGGATCCATGAATAATCAGCGCAGGAGGACGGGTACCTAATTTTTTTTTTTTTAATGTATGTTCATCCCAAAACTTTTCCTGGACATAAGATCCCATGGTATGCAGTCACTCTTACGCCTTTAATTGCAATGGTACACGAAAAATTGATTAGCTAGAGCCAGTCTTATACTTAATAATCTATCCTGATTGATGCTTTTAATGCCAAGAGTGAGTGTTCATGGCATTTTGGATTTGCTGGCAGGGGCATCTTATTGTACTTGTAAAAGAATATACAATGTATTATGTAGTGCATTTTTATTCAATTGTTGAAAGGTCTATACATTACAGAGTTTTATTCGAAA

Ace file of the UniGene sp_v3.0_unigene3260

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Exocyst complex component, putative n=1 Tax=Ricinus communis RepID=B9RAG8_RICCO	-	-	0.0	50%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	41%
Sma3	Putative leucine zipper-containing protein	-	-	5.598e-11	-

Source	Gene names
Sma3	At1g54090; At1g72470; At3g14090; At5g03540; At5g50380; B1144B06.20; B1793G04.19; F15I1.17; GSVIVT00006977001; GSVIVT00016199001; GSVIVT00017936001; GSVIVT00024003001; GSVIVT00034051001; GSVIVT00038035001; H0723C07.2; H0913C04.13; LOC_Os12g06840; OJ1003_F0

Source	GOs	Term	Type	Identity
Sma3	exocyst	GO:0000145	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	exocytosis	GO:0006887	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Exo70 exocyst complex subunit	IPR004140	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G50380.1	ATEXO70F1, EXO70F1 exocyst subunit exo70 family protein F1 chr5:20516382-20518433 REVERSE LENGTH=683	45%
RefSeq	Arabidopsis thaliana	NP_199849.2	exocyst complex component 7 [Arabidopsis thaliana]	45%
RefSeq	Populus trichocarpa	XP_002318723.1	predicted protein [Populus trichocarpa]	51%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NUF7

Fln msg: your sequence is longer than subject: 686 - 627

Fln protein: MAAIEGDERVIATAQQIVRSLATTETMTKDMLRILSNFDNRFSSMTERLGTDTVSDIEERLASAEDVVLRWDGNCSEAARESMIWEGPPDEAASYLQAVDEVQRLTESLESISLTENDNDESNNNDFHGSELLNRAQNVLQIAMARLEEEFQNILVQQGEIFEPERLYQMIHGPVSRVSFCSSRHEDMPDVASISSGEGEGDHDEDAQNLLGNTDNSGDLIIDLIRPEVIPDLKDIAERMVASKYERECCQVYSTVRREILDEGLRRLGIEKLSIEEIQKMDWETLEGKIKKWNQAVKIAVQVLLGSEKRLCVQIFEQLGSIQDTCFVETAKGAIMQLLNFAEAIAISRRSPERLFRILDMYESLSDLLPAIKSIFSDESCACIRAEADGILTRLGEAAKGTFVEFENAIQRDTSKTPIPGGAIHPLTRYVMNYIKFLFDYTDIFKQLIDEKKEAIPRQLSDGFIEFAEEDRQGDLSNPTPNQTPLARRLLSITSLLESNLEGKSRLYKDIALSHLFMMNNIRYIVQKVKGSELRTLLGDDWIRRRSGQVRQYATNYQRSAWRKVLSCLRDEGIYIGGSSSSKVSKEALKDRFKSFNAMFEEVYRNQTAWFVPDPQLRVELRISIEEKLLPAYRAFLGRFGMHLEGVRHAERYIKYSPEDLENFILDLFEGSPGSMNNQRRRTGT*

Protein Length: 687

Fln nts: CTTCGATCAAGGGTTTGAAGAAGCAGCAGCAGTATCCAGCTCCAGAAGGCAAGGGTTTTATGACCGTGCAAGGCGGGGCAAGCGCTTATAGAGCGAGAATTGAACGGAACGGTCTGTATTTTATCATTTGAATGTCTTCTGGTCCATTGTTGAACTTTGAGTCGTTGAATGTTGTGAGATATAATCTGTGTCTCAAGTTCTCTGGAGATAAAACGGGGAAAAATCCAGAGATATGAATGTAGAGGTCCCGAAAATATCTTAAATGCAGCGGATCCGATCTCATTGAAGCATGAACTGGTGTAAGATGATCAATCGGGACTAAAGTTTAAGGTATTCCCCAAAAATTTAAGATTTTGGTCAGGCATTTGAGAAATTGTCCCCAAATTCTATCATTATAGAAAATTGAAGGTATTGACTGGAATTTAAAGGGAGTTAGAGATATATCTTGCGTGTTGTTTTGTTATTTTTTTGTTTTTCTT_-_ATGGCGGCCATCGAGGGAGATGAGAGAGTGATTGCCACGGCACAGCAGATCGTTAGAAGCTTGGCAACGACAGAAACTATGACCAAAGATATGTTGAGAATTCTCTCAAATTTCGACAATCGATTTTCTAGCATGACGGAACGGCTGGGAACTGATACTGTCAGTGATATTGAAGAGAGGCTTGCTTCTGCAGAAGATGTGGTTTTGCGGTGGGATGGGAATTGCTCTGAAGCTGCAAGAGAATCTATGATATGGGAAGGGCCGCCAGATGAAGCTGCCTCTTACTTACAGGCCGTTGACGAAGTGCAGCGATTGACGGAAAGTCTGGAAAGCATATCGTTGACGGAAAATGATAATGATGAAAGCAATAATAATGATTTTCATGGAAGCGAGCTACTGAACCGTGCCCAGAATGTTCTGCAGATTGCCATGGCTAGGTTAGAAGAGGAATTCCAAAATATTTTGGTTCAGCAGGGTGAAATTTTTGAACCGGAGCGGCTTTACCAGATGATACATGGCCCGGTTTCTAGGGTTTCATTCTGTTCTTCTCGTCACGAAGATATGCCAGACGTTGCATCCATTAGCTCTGGCGAAGGAGAAGGCGATCATGATGAAGATGCCCAAAATCTTCTTGGTAATACCGATAACAGCGGAGACCTCATCATTGATTTAATTCGGCCTGAGGTAATTCCCGACCTCAAAGACATTGCCGAACGTATGGTTGCTTCCAAGTATGAACGAGAGTGCTGTCAGGTTTACAGTACTGTTCGCAGAGAAATCCTCGATGAGGGCTTGCGTCGTCTCGGAATAGAGAAACTCAGTATTGAAGAAATTCAAAAGATGGATTGGGAAACGTTGGAAGGGAAGATCAAGAAATGGAATCAGGCTGTAAAGATTGCTGTCCAGGTTCTTCTTGGCAGTGAGAAGCGCCTTTGCGTTCAGATCTTTGAGCAACTAGGTTCTATTCAAGACACTTGCTTTGTTGAGACTGCAAAGGGTGCTATTATGCAGCTTCTAAATTTTGCTGAGGCGATTGCAATAAGTCGCCGGTCTCCGGAAAGGCTCTTTAGGATTCTGGACATGTATGAGAGCCTCTCGGATCTTCTTCCAGCCATTAAGTCAATTTTTTCGGACGAGTCCTGTGCCTGCATCAGAGCAGAGGCCGATGGAATTTTGACACGATTAGGAGAGGCTGCGAAGGGGACATTTGTTGAATTTGAAAATGCTATTCAGAGGGACACTTCCAAGACTCCAATTCCTGGAGGTGCAATTCATCCTTTGACTCGTTATGTCATGAATTATATAAAGTTCCTTTTTGATTATACAGATATTTTCAAACAGCTTATAGATGAGAAAAAGGAAGCTATTCCAAGGCAGCTTTCAGATGGGTTCATAGAATTTGCTGAAGAAGATCGCCAAGGGGACCTTTCAAACCCAACTCCAAACCAAACTCCATTGGCTCGTCGTCTTTTATCCATTACATCACTGCTCGAGTCGAATCTTGAGGGAAAATCCAGACTCTACAAGGATATTGCTTTGTCTCATCTTTTCATGATGAATAATATTCGTTACATCGTTCAGAAAGTTAAAGGCTCAGAGCTCAGGACTCTTCTTGGTGATGATTGGATTAGAAGGCGCAGTGGGCAGGTACGTCAATATGCTACAAACTATCAAAGATCTGCTTGGAGAAAGGTCTTATCTTGCTTAAGAGATGAAGGAATCTATATTGGTGGAAGCTCTTCCTCCAAGGTTTCAAAGGAGGCTCTCAAGGATAGGTTCAAGAGCTTCAATGCTATGTTTGAAGAGGTATACAGGAATCAGACAGCTTGGTTTGTTCCAGATCCTCAGCTCCGTGTAGAGCTGCGCATCTCTATTGAGGAGAAATTGCTTCCAGCATACCGAGCCTTTTTGGGGAGATTCGGTATGCACTTGGAAGGTGTGAGGCATGCAGAAAGGTACATTAAATACTCACCGGAGGACTTAGAGAATTTTATACTGGATTTGTTTGAAGGCTCACCAGGATCCATGAATAATCAGCGCAGGAGGACGGGTACCTAA___TTTTTTTTTTTTTAATGTATGTTCATCCCAAAACTTTTCCTGGACATAAGATCCCATGGTATGCAGTCACTCTTACGCCTTTAATTGCAATGGTACACGAAAAATTGATTAGCTAGAGCCAGTCTTATACTTAATAATCTATCCTGATTGATGCTTTTAATGCCAAGAGTGAGTGTTCATGGCATTTTGGATTTGCTGGCAGGGGCATCTTATTGTACTTGTAAAAGAATATACAATGTATTATGTAGTGCATTTTTATTCAATTGTTGAAAGGTCTATACATTACAGAGTTTTATTCGAAA

Fln Alignment:

Contig3260___GDERVIATAQQIVRSLATTETMTKDMLRILSNFDNRFSSMTERLGTDTVS---DIEERLASAEDVVLRWDGNCSEAARESMIWEGPPDEAASYLQAVDEVQRLTESLESISLTXXXXXXXXXXXFHGSELLNRAQNVLQIAMARLEEEFQNILVQQGEIFEPERLYQMIHGPVSRVSFCSSRHEDMPDVASISSGEGEGDHDEDAQNLLGNTDNSGDLI--IDLIRPEVIPDLKDIAERMVASKYERECCQVYSTVRREILDEGLRRLGIEKLSIEEIQKMDWETLEGKIKKWNQAVKIAVQVLLGSEKRLCVQIFEQLGSIQDTCFVETAKGAIMQLLNFAEAIAISRRSPERLFRILDMYESLSDLLPAIKSIFSDESCACIRAEADGILTRLGEAAKGTFVEFENAIQRDTSKTPIPGGAIHPLTRYVMNYIKFLFDYTDIFKQLIDEKKEAIPRQLSDGFIEFAEEDRQGDLSNPTPNQTPLARRLLSITSLLESNLEGKSRLYKDIALSHLFMMNNIRYIVQKVKGSELRTLLGDDWIRRRSGQVRQYATNYQRSAWRKVLSCLRDEGIYIGGSSSSKVSKEALKDRFKSFNAMFEEVYRNQTAWFVPDPQLRVELRISIEEKLLPAYRAFLGRFGMHLEGVRHAERYIKYSPEDLENFILDLFEGS
A9NUF7______________GENRVVAMVHHIVRSLSTSENMTRDMLTMLSTFDNRLSAVSHQIPANPPGKSVDLETNLASADRIISCWESNSSKA----MLFQSSPKETNDYLTAVDGLRPLMENL--------------VVTHSSSAKLVRAQRLMEISMARLEKEFHRILSNNVK---------------------PTMELDDGNSSDGSSDDGSEDEDGSSSGRHGNQNLNANEICEIDMMPLDAVQDLRSIAKRMVAGGYGSECVRIYGMTRKSVIEGCLNRIGVDWLSASDVQKMEWEILDFKIKNWIRSVRIAVRILFASEKQLCNEIFAGLDHVRDSCFAEVIMRPTMKVLAFGESVTVSKKSSERLFRVLDMYETLSDLMPDIDAVYCQESCASVRTLASTIFVQLGDSALGIMVVFENAIKAENSKTSVPGGTIDPLTGYVMKYLSFLSDY-----------KETLTNMMANTPI-----DGHDELGSQV---SALSVRLGWTITNLQCNLDLKSNLYKDVALSNLFLMNNLHYIVKKVKGSKLLGLLGYGWLRKNQGEVRQYAENYERAAWMQALNCLSDERIHVNEGISSGVSQQALKDRLKGFNCAIEEVLKKHSGWMVPDVQLREELSISVAEKMIPAYRSFLGRLRKYSESGRHSQINIKYTAEDLEARLLDLFHGN

SNPs (tot: 9)

Position	A %	C %	G %	T %	Probability
1701	66			33	0.997452
1702	66		33		0.997452
1703			33	66	0.997452
1733	75			25	0.996473
1901		50	33		1.0
2006	20		80		0.995493
2203	90		10		0.90298
2402			36	63	1.0
2532	88			11	0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain