SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3254

Length: 2783 nt

UniGene Fasta

>sp_v3.0_unigene3254
GGCGGAGACAAGGTGGGTCTCTCATCTTGGCGTTGGAAGAAAGTTCACGAGGCAGAGCAAACAGAGAAGAGTTCGGAGGGCATATTCATTTCTTCGATTGTTTATTCGTCTAAGACGAACAGTCCGAGGACATGTCCGGCGGATGACTTGGTGAATTTGTTATCAAAATTTTCTTAGTACTCAGAAAGGTTCGGTCTCAGCATTTCCCTTTAACATCTTTTATTTTTTATTTCAGTAGCAGACACGAACCAAATCAAAATACCCTTAATACGGCTTAATTCTCAGTCCCGTAACTTGGCGGTAATTTGTTTTCCCTTTTCTGCTCGATGGTTTAATGTCGATGAACGAAGCAGTTGTGTTTCTGGGCTGCTTTCGGGCAGTTCTCATAGGGCGGTTTTTAAGATTTCCAGGGTTAGAAAACTGGTTTTCGACAGGAAATCTGCCCACGATTTCGAGCCTTAAATCGAAAGTGTACCTGGTTTGATCCAGTTTCTTTTTCAAAAATAGAAATTCCGTATTATTCTCTAGGTGAAGATTACAATATCAGGTTTCTTCTCTTCTGGACTATATCACAGCAACACTGAAATGTTTGTTAGATGGGAAGCCGAGAAAAGTTTCGGCTATTTGATAGTTAGTTTACAATTAAAGGCAGCGGAGCAGTTTTTTTTCATGAAGAGTTTGATGTTTGAAGGCAGACAAGCAGTTAGTTCGAAAGGATTGGGTGACAGTAACAGTTTGTTTGGTGGACAGGATCAGGCTTTATTTCGTATCGACCCAGATAGCTTTCGGAATTGAGAATTTGAAGAATTTAAACAGACAATTATTGCTGTCAAATTACAGGTTTCTGGCATTAGGGTTTCCTGCTATTAGGGTTTACTGGTATCAGGTAAAGCCATGGACGTCGAAACCTCAGGGAAACCTACAGGAAACAAAAGAACCTACACACGTCTGCCAAGGCAAGTATGCGTGTTTTGGCAGGAAGGCAGATGCACTAGAGAATCATGCAATTTTCTGCATGTCGACGAACCTGGGTCAGTCAAAAGGGGGGGAGCAACTAATGGGTTTGCTCCAAAGAGATCATATAACGGATCGGATGAGAGGGACATGCAGGCAGCAGGACCTCCCGGAGGATCGAGAAGGAATATTTCTGCTAGATGGGGAAGAGGACGAGGTGGTATATTCATATCCGACGAGAGGCAGAAGATTCGCAATAAAGTATGCAATTTCTGGCTTGCAGGCAATTGCCAGCGTGGAGAGGAATGCAAATATTTACACTCCTTTGTTATGGGTTCGGACGTGAAGTTCTTGACGCAGCTGTCCGGCCACGTTAAGGCTATCCGAGGGATTGCTTTTCCTTCTGATTCTGGTAAACTCTATTCTGGAGGCCAAGACAAGAAGGTTATAGTGTGGGACTGTCAAACAGGGCAGGGTAGAGACATCCCATTAAATGACGAGGTTGGATGCCTCATAAGTGAAGGCCCATGGATTTTTGTTGGCCTCCCAAATGCAGTCAAGGTTTGGAATATTTTGACCTCAACAGAACTAAGTTTAGTTGGTCCCAGGGGACAAGTACATGCCCTGGCTGTTGGTAATGGAATGCTTTTTGCTGGAACACATGATGGCAGTATATTGGCTTGGAAGTTTAGTCCTGCTTCCAATACCTTTGAGCCTGCAGCTTCCCTTGTAGGGCATACCCAAGCTGTTGTTTCATTAGTCTCAGGAGCAGACAGACTTTACTCTGGTTCCATGGACAAGACAATAAGAGTTTGGGATTTGGGAACTTTTCAATGTCTACAGACCCTGAGAGATCACACGTCAGTTGTAATGTCTCTTTTATGCTGGGATCAGTTTCTGTTGTCATGCTCTTTAGACAATACAGTGAAGGTCTGGGTTGCTACATCAAGTGGAGCCCTTGAAGTGACATATACTCATAATGAAGAACATGGTGTTCTTGCGCTTTGTGGAATGAACGATGAACAAGCCAAGCCTGTTTTGCTTTGTTCTTGCAATGATAACACTGTGCGTCTTTATGACCTGCCATCGTTCAGCGAACGAGGTAGAATATTCTCGAGAAACGAGGTACGAACATTCCAGATTGCACCTGGTGGATTATTTTTCACCGGTGATGCAACAGGTGAACTTAAAGTTTGGAACTGGGCAACCCAGACATCCTGATGCAACTTAAAAAATTCCTGTTGCAATCAGGGCACTCTGCTCGAAATGCAAATCTCTCTGGGAACTCCTTCACATGGCAGAAAGGTGCAGAGTCTGGAGAAGTTGAAATTTCACGTCCTGTATACTCACTCAAGCAACTCTAGTATGAAGAGCTAAAGTATATCAAAGATATATAAGTGGGTAATATTAACACTGAATAGCTGCGAGTGATGCATGCTTGATTTCCGTTAAGGAAATCAGAATTTTAAACTTTTATAGAGTAAACGACTATCAATATTTCTATTTAATTCTCCCTGCTGCATATAACGCCAAACATCAGCACTATTTCCAGCGCTACTCATCCTAGTGCTCCAGGATGAGCACACTTCTATGTTGAGGTTTGTTTGATACATGCTTTTCATTTAGATATGCTGTCCGAATTGGAGAACAAAGAGAGATTGATGTTTGTGAAAATATGCACTTGGGTTTGTGTATTCCCACTATACTGGATTCTCACTGGTATTTACTGCAAGAGCAAATAATCAAATTTGCCCGAAGCAAACATTTTCTTGAGAAATTTGTAAATTTTTCAGTCCGTTGTTATTAATATATTTAACTGTTTTCCGGAT

Ace file of the UniGene sp_v3.0_unigene3254

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Zinc finger CCCH domain-containing protein 17 n=4 Tax=Oryza sativa RepID=C3H17_ORYSJ	-	-	0.0	57%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	78%
Sma3	Chromosome undetermined scaffold_139, whole genome shotgun sequence	-	-	9.727e-13	-

Source	ECs	Term	Type	e value	Identity
Sma3	[Myosin heavy-chain] kinase.	EC:2.7.11.7	-	2.539e-08	-

Source	Gene names
Sma3	At4g25440; At5g40880; At5g49200; At5g51980; GSVIVT00001474001; GSVIVT00001478001; GSVIVT00001683001; GSVIVT00003091001; GSVIVT00003092001; GSVIVT00003098001; GSVIVT00003102001; GSVIVT00003105001; GSVIVT00003115001; GSVIVT00007421001; GSVIVT00008989001; GS

Source	GOs	Term	Type	Identity
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, CCCH-type	IPR000571	-	-
Sma3	WD40 repeat	IPR001680	-	-
Sma3	WD40/YVTN repeat-like-containing domain	IPR015943	-	-
Sma3	WD40-repeat-containing domain	IPR017986	-	-
Sma3	WD40 repeat, conserved site	IPR019775	-	-
Sma3		IPR019782	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G51980.2	Transducin/WD40 repeat-like superfamily protein chr5:21113650-21115902 REVERSE LENGTH=443	53%
RefSeq	Arabidopsis thaliana	NP_200011.1	zinc finger CCCH domain-containing protein 63 [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002318843.1	predicted protein [Populus trichocarpa]	58%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LPG9

Fln msg: your sequence is longer than subject: 427 - 370

Fln protein: MDVETSGKPTGNKRTYTRLPRQVCVFWQEGRCTRESCNFLHVDEPGSVKRGGATNGFAPKRSYNGSDERDMQAAGPPGGSRRNISARWGRGRGGIFISDERQKIRNKVCNFWLAGNCQRGEECKYLHSFVMGSDVKFLTQLSGHVKAIRGIAFPSDSGKLYSGGQDKKVIVWDCQTGQGRDIPLNDEVGCLISEGPWIFVGLPNAVKVWNILTSTELSLVGPRGQVHALAVGNGMLFAGTHDGSILAWKFSPASNTFEPAASLVGHTQAVVSLVSGADRLYSGSMDKTIRVWDLGTFQCLQTLRDHTSVVMSLLCWDQFLLSCSLDNTVKVWVATSSGALEVTYTHNEEHGVLALCGMNDEQAKPVLLCSCNDNTVRLYDLPSFSERGRIFSRNEVRTFQIAPGGLFFTGDATGELKVWNWATQTS*

Protein Length: 428

Fln nts: GGCGGAGACAAGGTGGGTCTCTCATCTTGGCGTTGGAAGAAAGTTCACGAGGCAGAGCAAACAGAGAAGAGTTCGGAGGGCATATTCATTTCTTCGATTGTTTATTCGTCTAAGACGAACAGTCCGAGGACATGTCCGGCGGATGACTTGGTGAATTTGTTATCAAAATTTTCTTAGTACTCAGAAAGGTTCGGTCTCAGCATTTCCCTTTAACATCTTTTATTTTTTATTTCAGTAGCAGACACGAACCAAATCAAAATACCCTTAATACGGCTTAATTCTCAGTCCCGTAACTTGGCGGTAATTTGTTTTCCCTTTTCTGCTCGATGGTTTAATGTCGATGAACGAAGCAGTTGTGTTTCTGGGCTGCTTTCGGGCAGTTCTCATAGGGCGGTTTTTAAGATTTCCAGGGTTAGAAAACTGGTTTTCGACAGGAAATCTGCCCACGATTTCGAGCCTTAAATCGAAAGTGTACCTGGTTTGATCCAGTTTCTTTTTCAAAAATAGAAATTCCGTATTATTCTCTAGGTGAAGATTACAATATCAGGTTTCTTCTCTTCTGGACTATATCACAGCAACACTGAAATGTTTGTTAGATGGGAAGCCGAGAAAAGTTTCGGCTATTTGATAGTTAGTTTACAATTAAAGGCAGCGGAGCAGTTTTTTTTCATGAAGAGTTTGATGTTTGAAGGCAGACAAGCAGTTAGTTCGAAAGGATTGGGTGACAGTAACAGTTTGTTTGGTGGACAGGATCAGGCTTTATTTCGTATCGACCCAGATAGCTTTCGGAATTGAGAATTTGAAGAATTTAAACAGACAATTATTGCTGTCAAATTACAGGTTTCTGGCATTAGGGTTTCCTGCTATTAGGGTTTACTGGTATCAGGTAAAGCC_-_ATGGACGTCGAAACCTCAGGGAAACCTACAGGAAACAAAAGAACCTACACACGTCTGCCAAGGCAAGTATGCGTGTTTTGGCAGGAAGGCAGATGCACTAGAGAATCATGCAATTTTCTGCATGTCGACGAACCTGGGTCAGTCAAAAGGGGGGGAGCAACTAATGGGTTTGCTCCAAAGAGATCATATAACGGATCGGATGAGAGGGACATGCAGGCAGCAGGACCTCCCGGAGGATCGAGAAGGAATATTTCTGCTAGATGGGGAAGAGGACGAGGTGGTATATTCATATCCGACGAGAGGCAGAAGATTCGCAATAAAGTATGCAATTTCTGGCTTGCAGGCAATTGCCAGCGTGGAGAGGAATGCAAATATTTACACTCCTTTGTTATGGGTTCGGACGTGAAGTTCTTGACGCAGCTGTCCGGCCACGTTAAGGCTATCCGAGGGATTGCTTTTCCTTCTGATTCTGGTAAACTCTATTCTGGAGGCCAAGACAAGAAGGTTATAGTGTGGGACTGTCAAACAGGGCAGGGTAGAGACATCCCATTAAATGACGAGGTTGGATGCCTCATAAGTGAAGGCCCATGGATTTTTGTTGGCCTCCCAAATGCAGTCAAGGTTTGGAATATTTTGACCTCAACAGAACTAAGTTTAGTTGGTCCCAGGGGACAAGTACATGCCCTGGCTGTTGGTAATGGAATGCTTTTTGCTGGAACACATGATGGCAGTATATTGGCTTGGAAGTTTAGTCCTGCTTCCAATACCTTTGAGCCTGCAGCTTCCCTTGTAGGGCATACCCAAGCTGTTGTTTCATTAGTCTCAGGAGCAGACAGACTTTACTCTGGTTCCATGGACAAGACAATAAGAGTTTGGGATTTGGGAACTTTTCAATGTCTACAGACCCTGAGAGATCACACGTCAGTTGTAATGTCTCTTTTATGCTGGGATCAGTTTCTGTTGTCATGCTCTTTAGACAATACAGTGAAGGTCTGGGTTGCTACATCAAGTGGAGCCCTTGAAGTGACATATACTCATAATGAAGAACATGGTGTTCTTGCGCTTTGTGGAATGAACGATGAACAAGCCAAGCCTGTTTTGCTTTGTTCTTGCAATGATAACACTGTGCGTCTTTATGACCTGCCATCGTTCAGCGAACGAGGTAGAATATTCTCGAGAAACGAGGTACGAACATTCCAGATTGCACCTGGTGGATTATTTTTCACCGGTGATGCAACAGGTGAACTTAAAGTTTGGAACTGGGCAACCCAGACATCCTGA___TGCAACTTAAAAAATTCCTGTTGCAATCAGGGCACTCTGCTCGAAATGCAAATCTCTCTGGGAACTCCTTCACATGGCAGAAAGGTGCAGAGTCTGGAGAAGTTGAAATTTCACGTCCTGTATACTCACTCAAGCAACTCTAGTATGAAGAGCTAAAGTATATCAAAGATATATAAGTGGGTAATATTAACACTGAATAGCTGCGAGTGATGCATGCTTGATTTCCGTTAAGGAAATCAGAATTTTAAACTTTTATAGAGTAAACGACTATCAATATTTCTATTTAATTCTCCCTGCTGCATATAACGCCAAACATCAGCACTATTTCCAGCGCTACTCATCCTAGTGCTCCAGGATGAGCACACTTCTATGTTGAGGTTTGTTTGATACATGCTTTTCATTTAGATATGCTGTCCGAATTGGAGAACAAAGAGAGATTGATGTTTGTGAAAATATGCACTTGGGTTTGTGTATTCCCACTATACTGGATTCTCACTGGTATTTACTGCAAGAGCAAATAATCAAATTTGCCCGAAGCAAACATTTTCTTGAGAAATTTGTAAATTTTTCAGTCCGTTGTTATTAATATATTTAACTGTTTTCCGGAT

Fln Alignment:

Contig3254___QKIRNKVCNFWLAGNCQR-GEECKYLHSFVMG-SDVKFLTQLSGHV-KAIRGIAFPSDSG--KLYSGGQDKKVIVWDCQTGQGRDIPLN-DEVGCLISEGPWIFVGLPNAVKVWNILTSTELSLVGPRGQVHALAVGNGMLFAGTHDGSILAWKFSPASNTFEPAASLVGHTQAVVSLVSGADRLYSGSMDKTIRVWDLGTFQCLQTLRDHTSVVMSLLCWDQFLLSCSLDNTVKVWVATSSGALEVTYTHNEEHGVLALCGMNDEQAKPVLLCSCNDNTVRLYDLPS
B8LPG9______________KNIRDKACPYWLAGNCKHAGDDCKYLHSHVIGGSDVTFLTKLVGHDNKPIRGIAFPSHSGTGRLCSAGDDNKLIIWDCQTGQGTDMPLNGEEIGCLLSEGPWLFAGLPNAVRAWNTLTLTELTLDGPRGQVHTLAVASGMLLAGTHDGSILAWKFNAASNTFEPAASLAGHTRRVVSLASGADRLYSGSMDHTIRVWDLETFQCIQTLRDHTSVVMSLLLWDQFLLSCSLDNTVKVWAATSSGALEVTYTHNEQHGVLALCGMNDDQAKPLLLCSCNDNSVRLYDLPS

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
459		33		66	1.0
720			87	12	0.992554
722			87	12	0.992554
725	90			10	0.90298
731	88			11	0.923564
732		88		11	0.923564
733	88			11	0.923564
734			88	11	0.923564
743			88	11	0.923564
775	10	90			0.90298
777	90		10		0.90298
859		20		80	0.999996
918	87		12		0.992554
919		87		12	0.992554
939	16	83			0.994512
941	83			16	0.994512
1395			66	33	0.997452
1396	66		33		0.997452
1397	66		33		0.997452
1583	10	90			0.90298
1587			10	90	0.90298
1999	16			83	0.994512
2001		16		83	0.994512
2778			25	75	0.996473
2780			25	75	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain