SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3232

Length: 1107 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene3232

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Lysine-specific histone demethylase 1 homolog 3 n=3 Tax=Oryza sativa RepID=LDL3_ORYSJ	-	-	0.0	58%
FL-Next	sp=Lysine-specific histone demethylase 1 homolog 3; Oryza sativa subsp. japonica (Rice).	-	-	0.0	58%
Sma3	Protein LSD1-LIKE 2	-	-	1.869e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3		EC:1.-.-.-	-	1.512e-13	-
Sma3	L-amino-acid oxidase.	EC:1.4.3.2	-	1.016e-11	-

Source	KEGGs	Term	e value	Identity
Sma3	Alanine, aspartate and glutamate metabolism	00250	1.016e-11	%
Sma3	Cysteine and methionine metabolism	00270	1.016e-11	%
Sma3	Valine, leucine and isoleucine degradation	00280	1.016e-11	%
Sma3	Tyrosine metabolism	00350	1.016e-11	%
Sma3	Phenylalanine metabolism	00360	1.016e-11	%
Sma3	Tryptophan metabolism	00380	1.016e-11	%
Sma3	Phenylalanine, tyrosine and tryptophan biosynthesis	00400	1.016e-11	%
Sma3	Isoquinoline alkaloid biosynthesis	00950	1.016e-11	%
Sma3	Metabolic pathways	01100	1.016e-11	%

Source	Gene names
Sma3	At1g62830; At3g10390; At3g13682; B0103C08-B0602B01.13; F13M14.34; F14P13.1; F23N19.19; FLD; GSVIVT00014490001; GSVIVT00018140001; GSVIVT00027608001; GSVIVT00031221001; HDMA1501; HDMA1502; HDMA901; HDMA902; HDMA903; HDMA904; HDMA905; LDL1; LDL2; LOC_Os02g5

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	electron carrier activity	GO:0009055	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	chromatin modification	GO:0016568	Biological Process	-
Sma3	histone deacetylation	GO:0016575	Biological Process	-
Sma3	root development	GO:0048364	Biological Process	-
Sma3	histone H3-K4 methylation	GO:0051568	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, GATA-type	IPR000679	-	-
Sma3		IPR000759	-	-
Sma3	Amine oxidase	IPR002937	-	-
Sma3	Aromatic-ring hydroxylase-like	IPR003042	-	-
Sma3	LisH dimerisation motif	IPR006594	-	-
Sma3	SWIRM domain	IPR007526	-	-
Sma3	Peptidase C14, ICE, catalytic subunit p20, active site	IPR016129	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G10390.1	FLD Flavin containing amine oxidoreductase family protein chr3:3229293-3232345 FORWARD LENGTH=884	56%
RefSeq	Arabidopsis thaliana	NP_187650.4	lysine-specific histone demethylase 1 [Arabidopsis thaliana]	56%
RefSeq	Populus trichocarpa	XP_002311993.1	hypothetical protein POPTRDRAFT_353344 [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q7XUR2

Fln msg: your sequence is shorter than subject: 290 - 811

Fln protein: IALVAGEAAINFESMDPNDAVERILEILRGIYGPRGVVVPEPVQTVCTRWGSEPLSMGSYSHVAVGASGDDYDILAESVGEGRVFFAGEATNRRYPATMHGAFLSGLREAANISKVYNSRSMPQKTDKSLSKDSELSAALLNDLFREPDLAFGGFSILFDPQSTDLNSMALLKVAVGGNGRKTGDDAGSSGQQHSSAPIKQHGQMPSKQLQLYCLLSRQQVLELSEVSGGDEDRLRYLCEKFRAKLVGRKGLGAVGEALVSSVKFVRSYQKNVMTPVPPYDFGNKGAQV*

Protein Length: 291

Fln nts: CATTGCCCTTGTTGCAGGGGAAGCTGCCATCAATTTTGAAAGCATGGATCCTAACGATGCTGTCGAAAGAATACTGGAGATTCTGAGGGGGATATATGGTCCAAGAGGGGTGGTTGTTCCTGAACCCGTCCAAACAGTGTGTACAAGATGGGGTTCTGAACCTCTCAGTATGGGATCATATTCACATGTTGCAGTTGGGGCATCCGGTGATGACTATGATATATTAGCTGAGAGTGTGGGGGAGGGTAGGGTCTTCTTCGCTGGAGAGGCCACCAATCGGCGATACCCTGCAACTATGCATGGTGCATTCTTGAGTGGCTTGAGAGAGGCAGCAAACATCTCTAAAGTTTATAATAGCCGGTCCATGCCACAGAAAACAGACAAGAGTTTATCCAAGGACAGTGAATTATCTGCAGCCCTTCTCAACGATTTGTTCAGGGAGCCTGATTTAGCATTTGGGGGATTCTCCATTCTTTTCGACCCACAATCCACTGATCTCAATTCAATGGCACTGTTGAAGGTTGCGGTGGGGGGAAATGGGAGGAAAACCGGGGATGATGCAGGATCATCAGGTCAACAACATTCTTCAGCTCCAATTAAACAACATGGTCAGATGCCATCGAAACAACTGCAACTGTACTGTTTGTTGTCTAGGCAGCAGGTGCTTGAGCTGAGTGAGGTGAGTGGGGGAGATGAAGACAGGTTAAGATATTTGTGTGAGAAATTTAGAGCAAAGTTAGTTGGCAGAAAAGGTTTAGGGGCCGTGGGAGAAGCCCTTGTTTCTTCTGTAAAGTTTGTGAGATCTTATCAAAAGAATGTCATGACTCCTGTTCCCCCATACGACTTTGGGAACAAAGGTGCCCAAGTTTAA___ACCTATTTTTGGTACAATTTGGAGGGTTTTGGAACCTGCAACTCTTTTGGCATATTGAGGATACAGACTCAATTTTGATTCTATTTTAGAGTTTATTTGTTCCAAAGTTGTATATAGAGGTTATTCTTTCGATCTTTCTAATGGGAAATGATGTGTACTGATTCATGGAAGGGGTTTCCATCTTTAGCACCCCTGAGAAAGGCGATTCTATTAACTCCATTGTTGAAACTTCCTTA

Fln Alignment:

Contig3232___IALVAGEAAINFESMDPNDAVERILEILRGIYGPRGVVVPEPVQTVCTRWGSEPLSMGSYSHVAVGASGDDYDILAESVGEGRVFFAGEATNRRYPATMHGAFLSGLREAANISKVYNSRSMPQKTDKSLSKDSELSAALLNDLFREPDLAFGGFSILFDPQSTDLNSMALLKVAVGGNGRKTGDDAGSSGQQHSSAPIKQHGQM---PSKQLQLYCLLSRQQVLELSEVSGGDEDRLRYLCEKFRAKLVGRKGLGAVGEALVSSVKFVRSYQKNVMTP
Q7XUR2______________MALVAGEAAHNFETTPPTDAVSSVLKILRGIYEPQGIEVPDPLQSVCTRWGTDSFSLGSYSHVAVGASGDDYDILAESVGDGRLFFAGEATTRRYPATMHGAFISGLREAANITLHANARAAKSKVEKGPSTNTQACAALLMDLFRQPDLEFGSFSVIFGGQASDPKSPAILKVELGGPRKKGATEGGKADQHHSNKLLFQQLQSHFNQQQQLYVYTLLSRQQAMELREVRGGDEMRLHYLCEKLGVKLVGRKGLGPGADAVIASIKAERNSSRTKTRP

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain