SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3227

Length: 1830 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene3227

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	DUF822 multi-domain protein	-	-	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	92%
Sma3	Putative uncharacterized protein	-	-	-

Source	InterPros	Term	Type	e value	Identity
Sma3	BZR1, transcriptional repressor	IPR008540	-	0.0	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G78700.1	BEH4 BES1/BZR1 homolog 4 chr1:29599854-29601539 FORWARD LENGTH=325	9.0e-25	84%
RefSeq	Arabidopsis thaliana	NP_565187.1	BES1/BZR1 homolog 4 [Arabidopsis thaliana]	1.0e-24	84%
RefSeq	Populus trichocarpa	XP_002305719.1	predicted protein [Populus trichocarpa]	8.0e-27	89%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LS33

Fln msg:

Fln protein: MTGSRLPTWKERENNKRRERRRRAIAAKIYSGLRMYGNYKLPKHCDNNEVLKALCNEAGWQVEEDGTTYRKGCPPPERMETGGASASMSPSSSYHPSPAASYHASPASSSFPSPGPSYQASPASSSFPSPGPSYQDGYLIPWLKNLAGGGVGTAGSGRGLPPMGTSNSAPVTPPLSSPTARGPRAMPDWETLVKLSAAATNDNSNHCNGTGGATVVADDPAAAFCNAVSGWSSQQQQHHHYPFLSAPPSPAPHSHSRREPLDLSNATVDNTKGRWLGGVRVSASASASMGPSSPTFSLLSPAAQLEHSLGGERSLLEGERSHFFVPADSRLWTPVGSAMSSPCRTPATGGAVVRVAAADEFQFECGSVKPWQGERIHEECGGDMDIASDDLELTLGNSKRRAKAESAATPMFS*

Protein Length: 415

Fln nts: GCAGCATTTAGTGTGGCGGGAGGATGGGAAAAGGGGAGCAGGCGAGTGAAAGTGCGCAGCCGCGTTGTTAATTAATGTTAACAACGGCAAACACCGGACTTGTATGTTGCTGTGTACTCAGACAGTTCAGCAATGTGGGATATCGTATTTTGAGTGGATTTCTATAGCCAAATAAGGCCTCGGCCTCGGCTCTTCTGACGCCTGTAAAACCATACTTTGTTCTGAGCCGAGACG_-_ATGACTGGGTCGAGATTGCCCACATGGAAAGAGCGAGAGAATAACAAGCGACGAGAGCGGCGGCGGCGCGCGATCGCCGCCAAGATCTATTCTGGTCTTCGAATGTATGGGAATTACAAGCTTCCGAAGCACTGTGACAACAATGAGGTGCTCAAAGCTCTGTGTAATGAAGCTGGTTGGCAAGTTGAAGAAGATGGAACAACCTATCGCAAGGGATGTCCGCCACCGGAGCGGATGGAAACGGGCGGAGCTTCGGCGTCTATGAGCCCATCCTCGTCCTATCATCCGAGTCCTGCTGCTTCATACCATGCCAGCCCGGCTTCGTCCTCGTTCCCAAGCCCGGGCCCTTCTTACCAGGCCAGCCCGGCTTCATCCTCGTTTCCGAGCCCCGGCCCCTCTTATCAGGATGGCTATCTCATCCCCTGGCTGAAAAATCTCGCCGGCGGCGGCGTTGGAACTGCGGGTTCTGGTCGTGGGCTCCCGCCTATGGGAACCTCCAACAGTGCACCAGTAACACCTCCGCTCAGCTCCCCCACTGCTAGAGGACCCCGCGCTATGCCTGACTGGGAAACTCTTGTCAAACTCTCCGCAGCTGCCACGAATGACAACAGTAATCACTGCAATGGCACGGGTGGAGCTACAGTGGTGGCGGATGACCCGGCGGCGGCGTTCTGCAATGCCGTTAGTGGCTGGTCGTCTCAGCAGCAGCAGCACCACCACTATCCGTTCCTCTCCGCTCCGCCGAGCCCAGCGCCGCACTCGCACTCCCGCCGCGAGCCACTCGATCTCTCGAACGCCACCGTTGACAACACCAAGGGGCGCTGGCTGGGCGGCGTTCGTGTCTCCGCCTCTGCATCTGCTTCCATGGGCCCGTCGTCGCCGACATTCAGCCTCCTTAGCCCGGCGGCGCAGCTCGAGCACAGCCTCGGAGGTGAGCGGAGCCTCCTCGAAGGTGAGCGGAGCCACTTCTTCGTCCCCGCCGATTCACGGCTCTGGACGCCGGTGGGGAGCGCCATGTCATCTCCTTGCCGCACGCCCGCCACAGGCGGCGCCGTCGTTCGAGTGGCGGCGGCGGACGAGTTCCAGTTCGAGTGCGGCAGCGTGAAGCCATGGCAAGGCGAGCGGATACACGAAGAATGCGGCGGTGATATGGATATCGCCTCTGATGATTTAGAGTTAACGCTCGGAAACTCCAAGCGGAGAGCCAAAGCCGAATCCGCCGCAACGCCTATGTTTAGCTAA___ACTTTCTCCAGTAAGAACTCGATCTTCAATCTCTTCACTCCTGAAATATTATGGCCCCGTCTGTGTAATATTTGCATCTCATTGTGTTGCAGGGAGAAACCAGTTCTGCGAATGGGAGATCGTCTGTCTCTGTGCTTGTGATTTCCCCTTTTTTTTGTGTCAAAATCCATATATAGATGTATGTGTTGAAGGTGATTCATTTGTATGGAGTCCACCAAAAATATGATCTGTCTTTCCTTTTAATGTTTCGGCCTTTTCCTCTGGTTTTTTCTTCGACATTGAAATGTATAGAGTTATAGGAGATTATTTAACATTCTATGGCTAATGAAAAATATTGAGTGTTTTTTTTGGCCA

Fln Alignment:

Contig3227___MTGSRLPTWXXXXXXXXXXXXXXXXXXXXYSGLRMYGNYKLPKHCDNNEVLKALCNEAGWQVEEDGTTYRKGCPPPERMETGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGYLIPWLKNLAXXXXXXXXXXXX--LPPMGTSNSAPVTPPLSSPTARGPRAMPDWETLVKLSAAATNDNSNHCNGTGGATVVADDPAAAFCNAVSGWSSXXXXXXXYPFLXXXXXXXXXXXXRREPLDLSNATVDNTKGRWLGGVRVXXXXXXXXXXXXXTFSLLSPAAQLEHSLGGERSLLEGERSHFFVPADSRLWTPVGSAMSSPCRTPATGGXXXXXXXXDEFQFECGSVKPWQGERIHEECGGDMDIASDDLELTLGNSKRRAKAESAATPMFS
B8LS33______________MTGSRLPTWKERENNKRRERRRRAIAAKIYSGLRMYGNYKLPKHCDNNEVLKALCNEAGWQVEEDGTTYRKGCPPPERMETGGASASMSPSSSYHPSPAASYHASPASSSFPSPGPSYQASPASSSFPSPGPSYQDGYLIPWLKNLGVGGGGVGTGGSGRGLPPIGTSNSAPVTPPLSSPTARGPRAMPDWDALVKISAAAANENSSHCNGTGGAAVVTDDPAAAFCNAVSGWSSQQHHHH-YPFLSAPPSPAPHSHSRREPLDLSNATVDNTKGRWLGGVRVSASASASMGPSSPTFSLLSPAAQLEHSLGGERS-------HFFVPADSRLWTPVGSAMSSPCRTPATGGAVVRVAAADEFQFECGSVKPWQGERIHEECGGDMDIASDDLELTLGSSKRRAKADSAATPMFS

SNPs (tot: 1)

Position	A %	C %	G %	T %	Probability
1612		88		11	0.923564

SSRs (tot: 2)

Start position	End position	Sequence	Length
291	302	GCG GCG GCG GCG	12
934	947	CAG CAG CAG CAG CA	14

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain