SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3225

Length: 2498 nt

UniGene Fasta

>sp_v3.0_unigene3225
GTTTTAGTGCAGCTGTGGGTTATGTTCTTTTCACTGGCGTGTCTGGCAGTACTTTATTTCTCCTCGGTCACCATGGTCTGGCTGGCTTCTCTGTGACATCCTGTAAATTCACAAAGTATGAAGTCATTTTAGTTACATATATGTAAACTGTTTCTGACTCTGATTTTTCTTCATATTCCAATCGGTATCCTTTAATGGCAGCTGGGGGACTTGATGTTGGTCTCTGCGTTTTTCTCTATGTAGTGGTTTGTGTACCATCACCCACTCAGTCTATTGTGTAGTGTCTATAAATATATGTCCAGACTATATCTAGTAGTGTAGTGTCGTGTCCCCACGGCTGAAACCGGCCAAGGCAAACCAAACCAAGCCTTCTTGGAGGCCATTAATTAGTAGTTGGCTGGGTGGAGGTTTTCGTACTGAACAAAGGGAATCATGCTGCAAGAAGAAATTATCAACAATATCAGTGCAGGCCCGAGTGGAGTCGTCACTAGATGTAGTGGTGATCTAGATTTGTCACTGCAGATAAGGCCCCCAAATAGCAAGTTTTTCCAGTAGTGTCAACTACCTCAAGTGGTGGCGCAGAAGGGCGGGATCTTATTGGCTTGGACTTGTGGAGGAGAAGAAATACAGTTAAGTCTAATAACAGTACGAGCCTCACAGAGAGCTCTGTTATAACCAACTTAAGCAGCGGGAGCGACAGGAGTCAAGAAGATGCAACATCCCTCAATTTCTGTTTTCCCAACACCGGTCGTTTAATTGATTATAACCACCTGGAAAGCGAGAGTAAACCCACTGGGCTTGAGGATGAAGGTCGAGGGCTAGGGTTCGATCCCACGACCTCGGCGCCGCATTCTTTAGGTCTGGTTCATGGGATTAGACCTGTTTGGATTAATAATCCTTTAAAGGCAGAGAACAATGGCATGGTCTTAGTGGATAAATCGCTGGGCTTTCCAGGCTTTAGAGAGGAATCTGAAGCCAGAATAGGGGACTTGGCCGTTGGATATATCGAAAGATTAGGGCGAGATATCGAAAATCAGCGTCGTGAAGCTCTGAGTAGATTGATGGAGGCAGATCAGAATATTAATAGAAATTCAGAGATAGTTTCTTCAGAGAACTGCAGCTTGATTCCTAGTTCGGCTGTGGCGCCATCACCGGCTGAGTCAAATGCATTTAGATCAAGATTTATGTCCAAGATACCTAGCAAAAGAAGCATGAGAGCCCCGCGAATGCGTTGGACTAGTACGCTCCATGCCCATTTTGTGCATGCGGTTGAACTTCTTGGAGGCCATGAAAGGGCAACTCCCAAGTCAGTTTTGGAGCTTATGAATGTGAAGGACCTCACTCTTGCCCATGTAAAAAGCCACTTACAGATGTATCGAACATTGAAGACAACCGATAAACCTGCAGGGCCCTGTGATGTATTCGAAGTTACATCGACGAAAAAGTCGGAAGATTTCATGGCCACTTACAGGGTTTCTTCAAAACAATATAACAAACCTTTCAGCTGCAATGGGGAGATGGAACTTGGCCCTATTCAAGTTACAGCGCGCCAGCCTGCGACCCCTTTCAGTGAAAACCAACAGAAACATCAGCAGAACTACTATCAGAATTTGCAGAACAATCTTTCTTCAAGGTCGAGAACTCTATTTAAAGACTGGCAACTACCTTCAGGTGTGAGTAGCTTATGTCAACCTCGAACCGGGAGTTCTATCGATCAAAATGAGGTAGAGTTTAGTGGGTATCAAGGAAACCATCATTACATAGGGAGGTTGGAGCAGAAACCACATGTGAACGACAATTTACAGAACAACCTTCCACAGTTTCCCAACAGTACTTTAACAATAAAGCCACAGGCAGTTTCTAATTCACAGCTGATAAATCCAAAGCTTGCCAGCTTTCCTGATCTGGACATCACATTAGGAAGACCAGGCTGGCAATCGGTATGTTCTACCGATTGCCCACAAGAGTTGCCTCTTCTTAAATGCTAAATTCTAGAGTACGAGAGAAACAGATAAGTGGATGGTGTTATAAAGTAGAAACCACATGAAGGATTGCTGCCCATGTCAAGAGAATGCGCAGAATAGCCGATACAAAGATTAATGAAAGTTTTAGGCTGTTGTTTCGAAGATTGAATGCCTGTACTCAGTGAAGAAAGACAGAGCTACGTGAGGTTCAACTGGTAAAACTATAATGCTGAAATTATTGCTTGCAACAGTCACTTACATACGTGGTTTGAAAATAGTCCTTTGTTTTATCTCATGGCAAAGAAAGAAAGGACATTTCAGGTTCCAAAGTCAAATGGTTTCAAAATCGTTTGCAAAGAAATGATGGTATATGTAGCATCAAGGTTTTGATATGAATTGTGTATGAACTAGGCTGGCAGCACGTTTTCCTAAAGATGGCAAGCGGCTAGCATATTGTCTATCAAACATTTCTGACACAATCGTGTATTTGTCAATGAACCCAAATTTTACTTTATGAAGTCTGTTTGGAAGAGT

Ace file of the UniGene sp_v3.0_unigene3225

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Milkweed pod1 n=1 Tax=Zea mays RepID=B5LZ60_MAIZE	-	-	1.0e-34	41%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	81%
Sma3	Putative transfactor	-	-	8.665e-09	-

Source	Gene names
Sma3	23.t00006; 27.t00118; At1g14600; At1g32240; At2g02060; At2g40260; At2g42660; At3g04450/T27C4_10; At4g17695; At5g16560; At5g29000; At5g42630; At5g45580; B0403H10-OSIGBa0105A11.2; B1053A04.32; B1068H08.25; F27G20_7; FE; GSVIVT00014014001; GSVIVT00015692001;

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-
Sma3	polarity specification of adaxial/abaxial axis	GO:0009944	Biological Process	-
Sma3	radial pattern formation	GO:0009956	Biological Process	-
Sma3	xylem and phloem pattern formation	GO:0010051	Biological Process	-
Sma3	abaxial cell fate specification	GO:0010158	Biological Process	-
Sma3		GO:0045449	Biological Process	-
Sma3	ovule development	GO:0048481	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glyoxalase/fosfomycin resistance/dioxygenase	IPR004360	-	-
Sma3	4-hydroxyphenylpyruvate dioxygenase	IPR005956	-	-
Sma3	Myb DNA-binding domain, plants	IPR006447	-	-
Sma3		IPR012287	-	-
Sma3		IPR014778	-	-
Sma3	Peptidase M22, glycoprotease, conserved site	IPR017860	-	-
Sma3	Myb domain, DNA-binding	IPR017930	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G32240.1	KAN2 Homeodomain-like superfamily protein chr1:11625882-11630355 REVERSE LENGTH=388	6.0e-38	75%
RefSeq	Arabidopsis thaliana	NP_564392.1	protein kanadi2 / DNA binding / transcription factor [Arabidopsis thaliana]	8.0e-38	75%
RefSeq	Populus trichocarpa	XP_002303435.1	predicted protein [Populus trichocarpa]	4.0e-39	76%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AAF1

Fln msg: your sequence is longer than subject: 356 - 194

Fln protein: MVLVDKSLGFPGFREESEARIGDLAVGYIERLGRDIENQRREALSRLMEADQNINRNSEIVSSENCSLIPSSAVAPSPAESNAFRSRFMSKIPSKRSMRAPRMRWTSTLHAHFVHAVELLGGHERATPKSVLELMNVKDLTLAHVKSHLQMYRTLKTTDKPAGPCDVFEVTSTKKSEDFMATYRVSSKQYNKPFSCNGEMELGPIQVTARQPATPFSENQQKHQQNYYQNLQNNLSSRSRTLFKDWQLPSGVSSLCQPRTGSSIDQNEVEFSGYQGNHHYIGRLEQKPHVNDNLQNNLPQFPNSTLTIKPQAVSNSQLINPKLASFPDLDITLGRPGWQSVCSTDCPQELPLLKC*

Protein Length: 357

Fln nts: GTTTTAGTGCAGCTGTGGGTTATGTTCTTTTCACTGGCGTGTCTGGCAGTACTTTATTTCTCCTCGGTCACCATGGTCTGGCTGGCTTCTCTGTGACATCCTGTAAATTCACAAAGTATGAAGTCATTTTAGTTACATATATGTAAACTGTTTCTGACTCTGATTTTTCTTCATATTCCAATCGGTATCCTTTAATGGCAGCTGGGGGACTTGATGTTGGTCTCTGCGTTTTTCTCTATGTAGTGGTTTGTGTACCATCACCCACTCAGTCTATTGTGTAGTGTCTATAAATATATGTCCAGACTATATCTAGTAGTGTAGTGTCGTGTCCCCACGGCTGAAACCGGCCAAGGCAAACCAAACCAAGCCTTCTTGGAGGCCATTAATTAGTAGTTGGCTGGGTGGAGGTTTTCGTACTGAACAAAGGGAATCATGCTGCAAGAAGAAATTATCAACAATATCAGTGCAGGCCCGAGTGGAGTCGTCACTAGATGTAGTGGTGATCTAGATTTGTCACTGCAGATAAGGCCCCCAAATAGCAAGTTTTTCCAGTAGTGTCAACTACCTCAAGTGGTGGCGCAGAAGGGCGGGATCTTATTGGCTTGGACTTGTGGAGGAGAAGAAATACAGTTAAGTCTAATAACAGTACGAGCCTCACAGAGAGCTCTGTTATAACCAACTTAAGCAGCGGGAGCGACAGGAGTCAAGAAGATGCAACATCCCTCAATTTCTGTTTTCCCAACACCGGTCGTTTAATTGATTATAACCACCTGGAAAGCGAGAGTAAACCCACTGGGCTTGAGGATGAAGGTCGAGGGCTAGGGTTCGATCCCACGACCTCGGCGCCGCATTCTTTAGGTCTGGTTCATGGGATTAGACCTGTTTGGATTAATAATCCTTTAAAGGCAGAGAACAATGGC_-_ATGGTCTTAGTGGATAAATCGCTGGGCTTTCCAGGCTTTAGAGAGGAATCTGAAGCCAGAATAGGGGACTTGGCCGTTGGATATATCGAAAGATTAGGGCGAGATATCGAAAATCAGCGTCGTGAAGCTCTGAGTAGATTGATGGAGGCAGATCAGAATATTAATAGAAATTCAGAGATAGTTTCTTCAGAGAACTGCAGCTTGATTCCTAGTTCGGCTGTGGCGCCATCACCGGCTGAGTCAAATGCATTTAGATCAAGATTTATGTCCAAGATACCTAGCAAAAGAAGCATGAGAGCCCCGCGAATGCGTTGGACTAGTACGCTCCATGCCCATTTTGTGCATGCGGTTGAACTTCTTGGAGGCCATGAAAGGGCAACTCCCAAGTCAGTTTTGGAGCTTATGAATGTGAAGGACCTCACTCTTGCCCATGTAAAAAGCCACTTACAGATGTATCGAACATTGAAGACAACCGATAAACCTGCAGGGCCCTGTGATGTATTCGAAGTTACATCGACGAAAAAGTCGGAAGATTTCATGGCCACTTACAGGGTTTCTTCAAAACAATATAACAAACCTTTCAGCTGCAATGGGGAGATGGAACTTGGCCCTATTCAAGTTACAGCGCGCCAGCCTGCGACCCCTTTCAGTGAAAACCAACAGAAACATCAGCAGAACTACTATCAGAATTTGCAGAACAATCTTTCTTCAAGGTCGAGAACTCTATTTAAAGACTGGCAACTACCTTCAGGTGTGAGTAGCTTATGTCAACCTCGAACCGGGAGTTCTATCGATCAAAATGAGGTAGAGTTTAGTGGGTATCAAGGAAACCATCATTACATAGGGAGGTTGGAGCAGAAACCACATGTGAACGACAATTTACAGAACAACCTTCCACAGTTTCCCAACAGTACTTTAACAATAAAGCCACAGGCAGTTTCTAATTCACAGCTGATAAATCCAAAGCTTGCCAGCTTTCCTGATCTGGACATCACATTAGGAAGACCAGGCTGGCAATCGGTATGTTCTACCGATTGCCCACAAGAGTTGCCTCTTCTTAAATGCTAA___ATTCTAGAGTACGAGAGAAACAGATAAGTGGATGGTGTTATAAAGTAGAAACCACATGAAGGATTGCTGCCCATGTCAAGAGAATGCGCAGAATAGCCGATACAAAGATTAATGAAAGTTTTAGGCTGTTGTTTCGAAGATTGAATGCCTGTACTCAGTGAAGAAAGACAGAGCTACGTGAGGTTCAACTGGTAAAACTATAATGCTGAAATTATTGCTTGCAACAGTCACTTACATACGTGGTTTGAAAATAGTCCTTTGTTTTATCTCATGGCAAAGAAAGAAAGGACATTTCAGGTTCCAAAGTCAAATGGTTTCAAAATCGTTTGCAAAGAAATGATGGTATATGTAGCATCAAGGTTTTGATATGAATTGTGTATGAACTAGGCTGGCAGCACGTTTTCCTAAAGATGGCAAGCGGCTAGCATATTGTCTATCAAACATTTCTGACACAATCGTGTATTTGTCAATGAACCCAAATTTTACTTTATGAAGTCTGTTTGGAAGAGT

Fln Alignment:

Contig3225___MYRTLKTTDKPAGPCDVFEVTSTKKSEDFMATYRVSSKQYNKPFSCNGEMELGPIQVTARQPATPFSEXXXXXXXXXXXXXXXXXSSRSRTLFKDWQLPSGVSSLCQPRTGSSIDQNEVEFSGYQGNHHYIGRLEQKPHVNDNLQNNLPQFPNSTLTIKPQAVSNSQLINPKLASFPDLDITLGRPGWQSVCSTDCPQELPLLKC
D5AAF1______________MYRTLKTTDKPAGPCDVFEVSSMQKSEDFMATYRVSSKQYNKSLSCNGEMDLGPIQVTARQSASPFNENQQKHQQNYYQNLQNNISSRSRNLFKDWQLPSSVNSLCQSRTRSSIDQNEVELSGYQGNHHYIARME---------QNSLPQFPNSTSAIKPQSVS-SQLINPKLASFPDLDITLGRPGWK-LEHSDCPQELPLLKC

SNPs (tot: 40)

Position	A %	C %	G %	T %	Probability
656	20			80	0.995493
657		80		20	0.995493
658	80		20		0.995493
659		80	20		0.995493
660	80		20		0.995493
678		80		20	0.995493
744		20		80	0.995493
747		80		20	0.995493
789	85		14		0.993533
790		85		14	0.993533
852		33		66	1.0
998			28	71	1.0
1200	25			75	0.996473
1204		75		25	0.996473
1336	88		11		0.923564
1337			11	88	0.923564
1617	80	20			0.995493
1676	20			80	0.995493
1678		80	20		0.995493
1679	80		20		0.995493
1724			40	60	1.0
1820		83	16		0.994512
1821		83		16	0.994512
1855	87			12	0.992554
1949	85		14		0.993533
1968	12	87			0.992554
1969		87		12	0.992554
1970	87		12		0.992554
1971		87	12		0.992554
1972	87		12		0.992554
2003	83			16	0.994512
2122	40		60		1.0
2280		10	90		0.90298
2282	90			10	0.90298
2283	90			10	0.90298
2316	88		11		0.923564
2392	10		90		0.90298
2434	14			85	0.993533
2435		85		14	0.993533
2437	85	14			0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain