SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3224

Length: 1882 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene3224

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Putative sinapyl alcohol dehydrogenase (Fragment) n=1 Tax=Pinus banksiana RepID=E5F5P1_PINBN	-	-	88%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	89%
Sma3	Cinnamyl alcohol dehydrogenase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Cinnamyl-alcohol dehydrogenase.	EC:1.1.1.195	-	0.0	-

Source	KEGGs	Term	Type	Identity
Sma3	Phenylpropanoid biosynthesis	00940		%
Sma3	Biosynthesis of phenylpropanoids	01061		%
Sma3	Metabolic pathways	01100		%
Sma3	Biosynthesis of secondary metabolites	01110		%
Sma3	Mannitol dehydrogenase.	EC:1.1.1.255	-	-

Source	Gene names
Sma3	AT2G21730; AT2G21890; AT4G37970; AT4G37980; AT4G39330; AT4g37970; At1g72680; At2g21730; At2g21890; At3g19450; At4g34230; At4g37970; At4g37980; At4g37990; At4g39330; AtCAD1; BM1; CAD; CAD1; CAD14; CAD19; CAD2; CAD3; CAD4; CAD5; CAD6; CAD7; CAD8; CADL1; CAD

Source	GOs	Term	Type	Identity
Sma3	cytoplasm	GO:0005737	Cellular Component	-
Sma3	apoplast	GO:0048046	Cellular Component	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-
Sma3	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	GO:0016616	Molecular Function	-
Sma3	cinnamyl-alcohol dehydrogenase activity	GO:0045551	Molecular Function	-
Sma3	mannitol dehydrogenase activity	GO:0046029	Molecular Function	-
Sma3	cofactor binding	GO:0048037	Molecular Function	-
Sma3	response to bacterium	GO:0009617	Biological Process	-
Sma3	lignin biosynthetic process	GO:0009809	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Alcohol dehydrogenase superfamily, zinc-type	IPR002085	-	-
Sma3	Alcohol dehydrogenase, zinc-type, conserved site	IPR002328	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding	IPR006140	-	-
Sma3	Alcohol dehydrogenase, C-terminal	IPR013149	-	-
Sma3	Alcohol dehydrogenase GroES-like	IPR013154	-	-
Sma3	NAD(P)-binding domain	IPR016040	-	-
Sma3	4Fe-4S ferredoxin, iron-sulphur binding, conserved site	IPR017900	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G39330.1	ATCAD9, CAD9 cinnamyl alcohol dehydrogenase 9 chr4:18291268-18292772 FORWARD LENGTH=360	61%
RefSeq	Arabidopsis thaliana	NP_195643.1	putative cinnamyl alcohol dehydrogenase 9 [Arabidopsis thaliana]	61%
RefSeq	Populus trichocarpa	XP_002309270.1	cinnamyl alcohol dehydrogenase-like protein [Populus trichocarpa]	65%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PS97

Fln msg:

Fln protein: MVKEGAIGQFEVEVEGWAARDDSGILSPINFTRRKTGSNDVTFKVEYCGICHSDLHQIRNEWKNSIYPMVPGHEIVGCVTEVGSEVKNFAVGDRVGVGCMVWSCHQCDSCSEGQEQYCEKMVLTYNAINVDGSPTYGGYSSLMVCDQSFVVKIPETLPFDAAAPLLCAGITVYSPMKYLQMSQPGKSLGVVGLGGLGHMAVKIGKALGLKVTVISTSSRKEKEAREDLGADHFVISKDPKQMEDAAKSLDYIIDTVSADHPLQPLLNLLKVNGKLVLVGLPENPLSFHPAGVISGRRFVGGSSIGGIKETQEMLDFCAEHNISCMIENIPIDYVNTAMERLVKGDVKYRFVINVAESFSGAN*

Protein Length: 364

Fln nts: CTTTTAAATGCTCGTTGGCTCTCCATCCTTCTACTGTTATCGGTTGCCATAACCTCGTTTCCACTGTTACTGGATGCCATACCATCGTTTGGTGGACTACAACTGCCTGTCGTCAAGGGTTTTGTGTGGGAAATTAGCAGGGTTCTGTGGAAACACAATCTGAGTTTTTCGTTCTGTACAGAGAAG_-_ATGGTGAAGGAAGGAGCTATTGGTCAGTTTGAGGTCGAGGTTGAGGGATGGGCGGCCAGGGATGACTCTGGCATTCTCTCGCCCATTAACTTTACTCGCAGGAAAACTGGATCCAATGACGTAACTTTCAAGGTCGAATACTGTGGAATTTGTCACTCTGATTTGCACCAAATTCGGAACGAATGGAAAAATTCGATATACCCAATGGTTCCAGGGCACGAAATTGTAGGGTGTGTAACTGAAGTGGGGTCAGAAGTGAAGAATTTTGCTGTTGGAGATCGCGTGGGGGTGGGCTGCATGGTTTGGAGCTGCCACCAATGTGATTCCTGTAGCGAAGGGCAAGAACAGTATTGTGAGAAGATGGTTTTGACATATAACGCCATTAATGTGGATGGGTCTCCCACTTATGGAGGTTATTCATCCTTGATGGTCTGTGACCAAAGTTTTGTAGTGAAGATTCCAGAGACTCTGCCGTTTGATGCAGCAGCCCCATTGCTCTGTGCGGGAATAACTGTATACAGCCCCATGAAATACCTCCAGATGTCTCAGCCTGGTAAAAGCCTTGGCGTTGTGGGGCTTGGCGGTTTGGGACACATGGCCGTGAAAATTGGAAAAGCTTTAGGACTGAAAGTAACGGTAATCAGTACATCGTCTAGGAAGGAAAAAGAAGCCAGAGAGGATTTGGGGGCAGACCACTTCGTCATCAGCAAAGATCCGAAACAGATGGAGGATGCGGCCAAGTCCCTGGATTACATAATTGACACAGTCTCTGCTGACCATCCTTTGCAGCCTCTCCTCAATTTATTGAAAGTGAATGGGAAACTGGTTTTGGTTGGTCTGCCTGAAAATCCACTCTCTTTTCATCCTGCAGGCGTCATATCTGGTCGGCGATTTGTAGGGGGCAGTTCGATTGGAGGAATAAAGGAAACGCAAGAGATGTTGGACTTCTGTGCAGAGCATAACATCTCGTGCATGATTGAAAACATTCCAATCGACTACGTGAATACAGCAATGGAACGATTAGTGAAGGGAGATGTGAAGTACCGTTTTGTAATCAACGTTGCTGAAAGCTTTTCTGGTGCAAACTGA___GTGAGATTTAAATGATGCTATTATTTCTGGTGATAGCCAAATATAATAGGTTGGGCGTGTTTAAAGAGTCGAGTTACAGTTGTCATTGTAACAGATAGTAGACTAGTTAAAAGAAAAATGAAGCGAGGGAAAATATTGTGGAATCCAAGCTAATTTTTTCAGTCATGGTGAAGGCTTTTGTATTTGCATTTCTCTGAAACAAAATTTACTCTATATGTTTTTAATACTTTTAAAGGTTCTGATAGTTTCAACACTATGCAAATGGGATTTATAATTTGATATTTGAGCTTCAGCCATGGAATTGCAGTAGCACCAACCAGTTTTCAATTTTTCTTGCCATGAATGGTAGCAGAACCAGTCTTTTTCTCAGTTTTATCACTATTACAGATGATGGCAGGAACTAGTTGGAACTTCACCTTTGGGCGGGCATGGCACAGGCGCAGGTGCCGGATGTGGGTGTTACCTGTCGCTATCTATGTGGCTTACATATCGTACACATTCAGCTTTTTTGGTTGTAAAATCACTTTCACCGATCGTTGGGCAGCAAGTATGCGAGTCAATAAAGTGACGCGAGTCATCTTCAACATTTATTGTACTTTTTTGTAGT

Fln Alignment:

Contig3224___MVKEGAIGQFEVEVEGWAARDDSGILSPINFTRRKTGSNDVTFKVEYCGICHSDLHQIRNEWKNSIYPMVPGHEIVGCVTEVGSEVKNFAVGDRVGVGCMVWSCHQCDSCSEGQEQYCEKMVLTYNAINVDGSPTYGGYSSLMVCDQSFVVKIPETLPFDAAAPLLCAGITVYSPMKYLQMSQPGKSXXXXXXXXXXHMAVKIGKALGLKVTVISTSSRKEKEAREDLGADHFVISKDPKQMEDAAKSLDYIIDTVSADHPLQPXXXXXXXXXXXXXXXXPENPLSFHPAGVISGRRFVGGSSIGGIKETQEMLDFCAEHNISCMIENIPIDYVNTAMERLVKGDVKYRFVINVAESFS
C0PS97______________MVNEGELSRFEVEVEGWAARDDSGILSPINFTRRKTGSNDVTFKVAYCGICHSDLHQIRNEWKNSMYPMVPGHEIVGLVTEVGSEVKKFAVGDRVGVGCMVWSCQQCDSCSEGQEQYCDKTVLTYNAINADGSPTFGGYSSLMVCNQRFVVKIPETLPFDAAAPLLCAGITVYSPMKYLQMTEPGKSLGVVGLGGLGHMAVKLGKAFGLRVTVISTSPKKEKEAREVLGADHFIISKDQKQMQDAAKSLDYIIDTVSADHPIQPLISLLKVQGKLVLVGLPENPIYFHPAAVISGRRFVGGSSIGGVKETQEMLDFCAEHNISCMIENIPIDYVNTAMERLGKGDVKYRFVINVAESYS

SNPs (tot: 5)

Position	A %	C %	G %	T %	Probability
1399		95		5	0.997749
1423	95			4	0.996252
1424			95	4	0.996252
1509	88		11		1.0
1519	83		11		0.999887

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain