SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3223

Length: 3113 nt

UniGene Fasta

>sp_v3.0_unigene3223
ATACCGAAGACTAAAAACAGGAAGGCAAATTGCTGACTGGAAAAAAGAAGGAAGAAGCTCGTAGGTTGGCTATAATGAGAGAACAATTCCTCGCTCAAAGTGGAGTTTCATCTGATATCTCGAAGGAGGAAAATCATACCATGCCCAAGAAACCAAAGTATGAAACTAAGAAGAAGAGACATGGTCCAATTGTTGCTGATGCTGTGGCAGCTGAGCAGGTTGCAGTGACTGCAGATCATGACGCCCCAGATGACAGCCACCTACCAGAAGAGGCAGGTGCAATGGAGGTTGAGCAGGTTGAGATTCAGCCAGACGTGGAAATGGAAGAGGACAAATTAGAAATAGAAGAGGAGGAAGAGGAGGAAGATGATTGGGATGCAAAAAGTTGGGATGAAAAGGATGTTGCCTTGTCTATTAAGAGTGCTTTTGCTGAAGAAGAAGAAAGTCCTATAGCTAAGAAAGTCACCAAACGTGTAGTTGTGCCTGCATCCAAGACATCTGTGCCTACTTCAACACCTACAGCTATGAATGTGGCAAAGTCTGTACCTCCTGTTAAACCTGCTCCACCAGTTAAAAAGGTCCAGGAAGCTCAACCTGAAAGTGAAGAAGAGTCTGAAAGTGAAGAGACTGATAGCGGACAAGAGGATACAGGACATAAGAAACGGGGAGGGGCAACAACGAAACGAGAAGCAAGGAAGGCAGAGGCACTGTCAAAAAGGAGTTCAGATGATTTACGCTCACCTATCTGTTGTATCCTTGGTCACGTTGATACTGGGAAGACAAAACTGCTCGATTGTATTCGTCGGACAAATGTGCAGGAAGGCGAGGCAGGAGGGATCACTCAACAGATTGGAGCAACATACTTTCCCATGGAAAATATAAGGGAGAGAACCAAAGAGCTAAAGGCTGATGCTAATTTAAGAGTTCCAGGATTACTTGTTATTGACACACCCGGGCATGAATCCTTCACAAATTTGAGATCACGTGGTTCTGGTTTATGTGATATTGCAATATTGGTTATTGATATCATGCATGGTTTGGAGCCCCAAACAATTGAATCACTGAATCTTCTGAAAATGCGGCACACACCATTTGTGGTTGCATTGAATAAGGTGGATAGATTATATGCTTGGAAGTCTCGTCCAAATGCTCCAATAAGGACAGCCCTAAAGCAACAGTCGAAGGATGTTCAAAATGAATTTGAACATCGACTGAGTCAGATTATTACAGAGCTCAAGGAACAAGGACTGAATTCTGAGCTGTACTACAGAAATAAAGAAGTCAGAAAATACGTTAGCATTGTGCCTACAAGTGCAATCAGTGGGGAAGGTGTACCAGACCTTCTGTTGTTACTTATACAGTCAACACAAAAGTTGATGGAGGAAAGGCTTATGTACATTAGTGAAGTTCAGTGTACTGTCCTAGAGGTGAAGGTGATTGAGGGTTTGGGAACTACAATTGATGTTATACTTATAAATGGTGTGCTTCATGAAGGAGATCAGATTGTGGTGTGTGGAATGCAGGGCCCTATTGTGACAACTATTCGTGCTTTATTGACTCCTCATCCAATGAAGGAGCTTCGAATAAAGGGATCTTACCAACATCACAAGGAGTTGAAGGCAGCACAGGGAATTAAGATTACTGGACAGGGGCTTGAGCATGCTATAGCAGGAACTCAGTTACATGTTGTAGGACCTGAGGATGATTTGGAAGATCTCAAGGATGAAGCAATGCAAGATATGAAAAATGTAATGTCCCGGATTGACAAGTCTGGTGAGGGAGTTTGTGTGCAAGCTTCAACTCTGGGATCATTGGAAGCTTTACTTGAGTTCTTGAAGAGTCCAGCTGTAAACATCCCTGTCAGTGGGATCAATATTGGCCCTGTGCATAAAAAAGATATCATGCGGTCTAGTGTGATGCTTGAGAAAAAGAAGAAAGAGTATGCTGCAATTTTGGCTTTTGATGTGAAAGTTACTCCAGAAGCTCGTGAGCTTGCAGATGAACTTGGTGTGAAGATTTTTATGGCCGACATTATTTATCATTTATTTGATCAGTTCAAAGCTTATGTTGACAACATTAAAGAAGAAAAGAAAAAAGAATCAGCTGAGGAAGCAGTTTTCCCTTGTGTGCTGAAGATTTTGCCAAATTGTGTTTTCAATAAAAAGGACCCTATCATTGTGGGGGTTGATGTTTTGGAAGGCATTGCAAGGGTTGGAACACCATTATGCGTTCCCACGAAAGAGTTCATAGACATTGGCAGGATATCTTCCATTGAGATCAATCATAAAGCGGTTGATTCAGCTAGGAAGGGTCAACAGGTGGCTATGAAGATTATTGGGAATAGCGCTGAGGAAGCACAGAAAATGATTGGTAGGCATTTTGAAGCTGAGGATGAACTAGTGAGTCATGTCACTAGGAGATCTATAGATATATTAAAAGAAAATTACAGGGATGACCTGTCACTTGAAGATTGGAAATTTGTTTTAAAATTGAAGAAACTTTTTAAAATACCTTAAGATTGAGGATGCATTTCCGAGTGCGCTGTTGACTGGGGTGGAGTTCCCCTCATGGAAGTGGAAAAACGCTTCCTGTATTGTTGAGCATCATTTTGGAGATTCCACGAAATGAATTTAATATCAAAAAGACTTTGACTGGAGTATGGCCTTTTTTGTTACAAGATTTGCTACTGCCAGTGTATTGGTTGACCATAAATTGGAGGCAATGAATATAGAGTTCTTTACCAATGTGGGAGTTTTCTTCAGATATTTGTTGTAGTTTGTTCATTTTTGTATTTGAATGATGTTCTAGCAGTCAATGTGGGCTAATATAAAGTGTCAGTTTGACACTAGTAGAATGGAGAATAGAGAAATTAGGCAACTGTACATGTCTACGAGAGGTTATTGAATTTGAGAATTATCCATATTTGCTAGAGTTGGTATCGAAGATTTGCCTATTTACAAACTTCAATTCAAATGGTATGGAAACATTGTTTTAAAGAAGCCATTTTACTACTGTAACGGTAGAAATGTCAAAGGTTGGCTTCAGAACATAATGGCGAAGAATTAATATGTTCATAATCTAATTAATTAAAGCATTTAATCTTCACGGTTTAC

Ace file of the UniGene sp_v3.0_unigene3223

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	translation initiation factor [Pisum sativum]	-	-	0.0	75%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Sma3	Putative translation initiation factor IF-2	-	-	3.803e-14	-

Source	Gene names
Sma3	At1g21160; At1g76810; At1g76820; At2g27700; CHLREDRAFT_141272; EIF5Ba; F28O16.18; F28O16.19; F28O16.9; GSVIVT00002292001; GSVIVT00037571001; LOC_Os12g31880; MICPUCDRAFT_37808; MICPUN_55463; OSJNBb0024F06.7; OSTLU_48964; Os05g0592600; Os12g0503200; OsI_025

Source	GOs	Term	Type	Identity
Sma3	tRNA binding	GO:0000049	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	translation initiation factor activity	GO:0003743	Molecular Function	-
Sma3	GTPase activity	GO:0003924	Molecular Function	-
Sma3	GTP binding	GO:0005525	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Protein synthesis factor, GTP-binding	IPR000795	-	-
Sma3	Ribosomal protein L5	IPR002132	-	-
Sma3	tRNA-binding domain	IPR002547	-	-
Sma3	2-oxo acid dehydrogenase, lipoyl-binding site	IPR003016	-	-
Sma3	Ribosomal protein S1, RNA-binding domain	IPR003029	-	-
Sma3	Mitochodrial transcription termination factor-related	IPR003690	-	-
Sma3	Translation elongation factor EFTu/EF1A, domain 2	IPR004161	-	-
Sma3	Small GTP-binding protein domain	IPR005225	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Translation initiation factor IF- 2	IPR015760	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G76810.1	eukaryotic translation initiation factor 2 (eIF-2) family protein chr1:28831366-28836310 REVERSE LENGTH=1294	70%
RefSeq	Arabidopsis thaliana	NP_177807.3	translation initiation factor eIF-5B [Arabidopsis thaliana]	70%
RefSeq	Populus trichocarpa	XP_002318326.1	predicted protein [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: A9NZE9

Fln msg: your sequence is longer than subject: 814 - 315

Fln protein: MREQFLAQSGVSSDISKEENHTMPKKPKYETKKKRHGPIVADAVAAEQVAVTADHDAPDDSHLPEEAGAMEVEQVEIQPDVEMEEDKLEIEEEEEEEDDWDAKSWDEKDVALSIKSAFAEEEESPIAKKVTKRVVVPASKTSVPTSTPTAMNVAKSVPPVKPAPPVKKVQEAQPESEEESESEETDSGQEDTGHKKRGGATTKREARKAEALSKRSSDDLRSPICCILGHVDTGKTKLLDCIRRTNVQEGEAGGITQQIGATYFPMENIRERTKELKADANLRVPGLLVIDTPGHESFTNLRSRGSGLCDIAILVIDIMHGLEPQTIESLNLLKMRHTPFVVALNKVDRLYAWKSRPNAPIRTALKQQSKDVQNEFEHRLSQIITELKEQGLNSELYYRNKEVRKYVSIVPTSAISGEGVPDLLLLLIQSTQKLMEERLMYISEVQCTVLEVKVIEGLGTTIDVILINGVLHEGDQIVVCGMQGPIVTTIRALLTPHPMKELRIKGSYQHHKELKAAQGIKITGQGLEHAIAGTQLHVVGPEDDLEDLKDEAMQDMKNVMSRIDKSGEGVCVQASTLGSLEALLEFLKSPAVNIPVSGINIGPVHKKDIMRSSVMLEKKKKEYAAILAFDVKVTPEARELADELGVKIFMADIIYHLFDQFKAYVDNIKEEKKKESAEEAVFPCVLKILPNCVFNKKDPIIVGVDVLEGIARVGTPLCVPTKEFIDIGRISSIEINHKAVDSARKGQQVAMKIIGNSAEEAQKMIGRHFEAEDELVSHVTRRSIDILKENYRDDLSLEDWKFVLKLKKLFKIP*

Protein Length: 815

Fln nts: ATACCGAAGACTAAAAACAGGAAGGCAAATTGCTGACTGGAAAAAAGAAGGAAGAAGCTCGTAGGTTGGCTATA_-_ATGAGAGAACAATTCCTCGCTCAAAGTGGAGTTTCATCTGATATCTCGAAGGAGGAAAATCATACCATGCCCAAGAAACCAAAGTATGAAACTAAGAAGAAGAGACATGGTCCAATTGTTGCTGATGCTGTGGCAGCTGAGCAGGTTGCAGTGACTGCAGATCATGACGCCCCAGATGACAGCCACCTACCAGAAGAGGCAGGTGCAATGGAGGTTGAGCAGGTTGAGATTCAGCCAGACGTGGAAATGGAAGAGGACAAATTAGAAATAGAAGAGGAGGAAGAGGAGGAAGATGATTGGGATGCAAAAAGTTGGGATGAAAAGGATGTTGCCTTGTCTATTAAGAGTGCTTTTGCTGAAGAAGAAGAAAGTCCTATAGCTAAGAAAGTCACCAAACGTGTAGTTGTGCCTGCATCCAAGACATCTGTGCCTACTTCAACACCTACAGCTATGAATGTGGCAAAGTCTGTACCTCCTGTTAAACCTGCTCCACCAGTTAAAAAGGTCCAGGAAGCTCAACCTGAAAGTGAAGAAGAGTCTGAAAGTGAAGAGACTGATAGCGGACAAGAGGATACAGGACATAAGAAACGGGGAGGGGCAACAACGAAACGAGAAGCAAGGAAGGCAGAGGCACTGTCAAAAAGGAGTTCAGATGATTTACGCTCACCTATCTGTTGTATCCTTGGTCACGTTGATACTGGGAAGACAAAACTGCTCGATTGTATTCGTCGGACAAATGTGCAGGAAGGCGAGGCAGGAGGGATCACTCAACAGATTGGAGCAACATACTTTCCCATGGAAAATATAAGGGAGAGAACCAAAGAGCTAAAGGCTGATGCTAATTTAAGAGTTCCAGGATTACTTGTTATTGACACACCCGGGCATGAATCCTTCACAAATTTGAGATCACGTGGTTCTGGTTTATGTGATATTGCAATATTGGTTATTGATATCATGCATGGTTTGGAGCCCCAAACAATTGAATCACTGAATCTTCTGAAAATGCGGCACACACCATTTGTGGTTGCATTGAATAAGGTGGATAGATTATATGCTTGGAAGTCTCGTCCAAATGCTCCAATAAGGACAGCCCTAAAGCAACAGTCGAAGGATGTTCAAAATGAATTTGAACATCGACTGAGTCAGATTATTACAGAGCTCAAGGAACAAGGACTGAATTCTGAGCTGTACTACAGAAATAAAGAAGTCAGAAAATACGTTAGCATTGTGCCTACAAGTGCAATCAGTGGGGAAGGTGTACCAGACCTTCTGTTGTTACTTATACAGTCAACACAAAAGTTGATGGAGGAAAGGCTTATGTACATTAGTGAAGTTCAGTGTACTGTCCTAGAGGTGAAGGTGATTGAGGGTTTGGGAACTACAATTGATGTTATACTTATAAATGGTGTGCTTCATGAAGGAGATCAGATTGTGGTGTGTGGAATGCAGGGCCCTATTGTGACAACTATTCGTGCTTTATTGACTCCTCATCCAATGAAGGAGCTTCGAATAAAGGGATCTTACCAACATCACAAGGAGTTGAAGGCAGCACAGGGAATTAAGATTACTGGACAGGGGCTTGAGCATGCTATAGCAGGAACTCAGTTACATGTTGTAGGACCTGAGGATGATTTGGAAGATCTCAAGGATGAAGCAATGCAAGATATGAAAAATGTAATGTCCCGGATTGACAAGTCTGGTGAGGGAGTTTGTGTGCAAGCTTCAACTCTGGGATCATTGGAAGCTTTACTTGAGTTCTTGAAGAGTCCAGCTGTAAACATCCCTGTCAGTGGGATCAATATTGGCCCTGTGCATAAAAAAGATATCATGCGGTCTAGTGTGATGCTTGAGAAAAAGAAGAAAGAGTATGCTGCAATTTTGGCTTTTGATGTGAAAGTTACTCCAGAAGCTCGTGAGCTTGCAGATGAACTTGGTGTGAAGATTTTTATGGCCGACATTATTTATCATTTATTTGATCAGTTCAAAGCTTATGTTGACAACATTAAAGAAGAAAAGAAAAAAGAATCAGCTGAGGAAGCAGTTTTCCCTTGTGTGCTGAAGATTTTGCCAAATTGTGTTTTCAATAAAAAGGACCCTATCATTGTGGGGGTTGATGTTTTGGAAGGCATTGCAAGGGTTGGAACACCATTATGCGTTCCCACGAAAGAGTTCATAGACATTGGCAGGATATCTTCCATTGAGATCAATCATAAAGCGGTTGATTCAGCTAGGAAGGGTCAACAGGTGGCTATGAAGATTATTGGGAATAGCGCTGAGGAAGCACAGAAAATGATTGGTAGGCATTTTGAAGCTGAGGATGAACTAGTGAGTCATGTCACTAGGAGATCTATAGATATATTAAAAGAAAATTACAGGGATGACCTGTCACTTGAAGATTGGAAATTTGTTTTAAAATTGAAGAAACTTTTTAAAATACCTTAA___GATTGAGGATGCATTTCCGAGTGCGCTGTTGACTGGGGTGGAGTTCCCCTCATGGAAGTGGAAAAACGCTTCCTGTATTGTTGAGCATCATTTTGGAGATTCCACGAAATGAATTTAATATCAAAAAGACTTTGACTGGAGTATGGCCTTTTTTGTTACAAGATTTGCTACTGCCAGTGTATTGGTTGACCATAAATTGGAGGCAATGAATATAGAGTTCTTTACCAATGTGGGAGTTTTCTTCAGATATTTGTTGTAGTTTGTTCATTTTTGTATTTGAATGATGTTCTAGCAGTCAATGTGGGCTAATATAAAGTGTCAGTTTGACACTAGTAGAATGGAGAATAGAGAAATTAGGCAACTGTACATGTCTACGAGAGGTTATTGAATTTGAGAATTATCCATATTTGCTAGAGTTGGTATCGAAGATTTGCCTATTTACAAACTTCAATTCAAATGGTATGGAAACATTGTTTTAAAGAAGCCATTTTACTACTGTAACGGTAGAAATGTCAAAGGTTGGCTTCAGAACATAATGGCGAAGAATTAATATGTTCATAATCTAATTAATTAAAGCATTTAATCTTCACGGTTTAC

Fln Alignment:

Contig3223___MKELRIKGSYQHHKELKAAQGIKITGQGLEHAIAGTQLHVVGPEDDLEDLKDEAMQDMKNVMSRIDKSGEGVCVQASTLGSLEALLEFLKSPAVNIPVSGINIGPVHKKDIMRSSVMLEKKKKEYAAILAFDVKVTPEARELADELGVKIFMADIIYHLFDQFKAYVDNIXXXXXXXXXXXXVFPCVLKILPNCVFNKKDPIIVGVDVLEGIARVGTPLCVPTKEFIDIGRISSIEINHKAVDSARKGQQVAMKIIGNSAEEAQKMIGRHFEAEDELVSHVTRRSIDILKENYRDDLSLEDW
A9NZE9______________MKELRIKGSYQHHKELKAAQGIKITAQGLEHAIAGTQLHVVGPDDDLEDLKDEAMQDMKNVMSRIDKTGEGVCVQASTLGSLEALLEFLKSPAVNIPVSGISIGPVHKKDIMRSSVMLEKKKKEYAAILAFDVKVTPEARELADELGVKIFMADIIYHLFDQFKAYVDNIKEEKKKESAEEAVFPCVLKILPQCVFNKKDPIIVGVDVLEGIARVGTPLCVPTKEFIDIGRISSIEINHKAVDTAKKGQQVAMKIIGNNPEEAQKMIGRHFEVEDELVSHVTRRSIDILKENYRDDLSLEDW

SNPs (tot: 37)

Position	A %	C %	G %	T %	Probability
646	75		25		0.996473
661	80			20	0.995493
662	80		20		0.995493
663		80	20		0.995493
905			88	11	0.923564
907		88	11		0.923564
908			11	88	0.923564
1082			81	18	0.999994
1297	11		88		0.923564
1347		12		87	0.992554
1388	22		77		0.999999
2081	87		12		0.992554
2106		25		75	0.996473
2123		80	20		0.995493
2125		20		80	0.995493
2129	20			80	0.995493
2130		20	80		0.995493
2134	80			20	0.995493
2135	80		20		0.995493
2137	80	20			0.995493
2139			20	80	0.995493
2141		20		80	0.995493
2142	20		80		0.995493
2223	71		28		1.0
2238	14		85		0.993533
2671	14			85	0.993533
2674		14		85	0.993533
2677	87		12		0.992554
2678	87			12	0.992554
2703		14		85	0.993533
2711	33			66	1.0
2759		75		25	0.996473
2858			76	23	1.0
3085			25	75	0.996473
3094	33		66		0.997452
3095		66	33		0.997452
3097		33		66	0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
432	443	GAA GAA GAA GAA	12

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain