SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3222

Length: 2899 nt

UniGene Fasta

>sp_v3.0_unigene3222
TTTAGGAGCCACAAATATCGACATTCACAATACTACGAAATAAAGCCGCACGCCTAAAGTAGGAAACCGTGCTATACACAAGCAGCGTGAGTCTCGGTGCATCAAACAGTAAACTTAGTAACAAATGGAGCTAACCAGATCTAACCTCTTCCTGAAGGGATCGCAAGGTCTGCCCCGAAAACAGACTTAAACTAAGAGCTCAAGAATCAGTTTACAGATACCTCAATGGACATTAGACTCCTTAGATTTAAATGTCAACGGAACCCTTGAATACAAGGGACAAGAGTACCCAGCAACAGCACAGAGCTGTTCGACCTTCACCACTTGCCATACATTCAACTTTGGAAATCTAAGAGCTAAGAGGCAGAATGCCTTAAGAGACCAACCATCCAGTTCCAAACAACCAAGAAACCGTGGTAGTTGCTTACCCAAGAAATGGTGAGCGGAGAACTAAAATAGGAAACAGTGCTATACAAAAACAGAGCGCATTTCTTAGATAATTTAACATCTCGGTGTACCGAACAGTAAACTTAGTAACAAGTGGAGCTAGCCAGACCCAACCCTTTCCTGAAGGGATTGCAAGGTCTCCCCGAAAACAGACAGTAAACTTAGTCACAAGTGGAGCTAACCAGACCTAACCCCTTCCTGAAGGGATTGCAAGGTCTCCCCGAAATCAGACTTAAATTAAGAGCTCAGGAATCAGTTTACAAATACCTCAATGGACATTAGACTCCTTAGATTTAAATGTCAACCGAACCCTTGAATACAACGGACAAGAGTACCCAGCAACAGCGCAGAGCTGTTCGATCTTCACCACTTCCCATACATTCAACATTGGAAATCTAAGAGCTAAGAAGCAGAATGCCTTAAGAGACCAACCATCCAGTTCCAAACAACCAAGAAACCGTGGTAGTTGCTTACCCGAGAAATGGTGAGCGGACGAATTTGGCTGAAAGCACAGTTCTCTGCTTTGAAAGGTAGCGCGAATCCTCTGAAGAAGAACCTTGCCTTCACCACGAAGTTGCAGCGCGGGGTAAACCTGTGACCTTGCAGTGGAGTCCACGAATCGAGTCCCCGGCCCTGAGCCGAAGTCAGTACCAGCGCCACGGAAGGGATGGAGAAAGGTAGAACGGAGTCCTGGGAAGAAAGATCGGAAATGAAACCAAATCTCCGAGAGATAGCTTGAACCCGACTTAAGACAAACTCTGACCGGAGGATCCTCACACCTTTTCTCCTCCGTCGATGCAACGCTGAGTTCGAGGAGCTTAACTGTATTTCCCTGTTCCTTGACAAAAGCCAAGAACCTGTATTTCCCTTGCCTTCACCGGGAAGTTGCAGCGCGGAGGTAAACCTGTGACCTTGCATGAAGTCCACGCATCTAACCGGGGGTAAACCTGTGACCTTGCAGTGGAGTCCACGCATCGAGTCCTCGGCCCTGAGCCGAAGTCAGTACCAGCGCCACGGAAGGGATGGAGAAAGGTAGAACGGAGTCCTGGGAAGAAAGATCGGAAATGAAACCAAATCTCCGAGAGATAGCTTGAACCCGACTTAAGACAAACTCTGACCGGAGGATCCTCACACCTTTTCTCCTCCGTCGATGCAACACTGCCTTTTCTCCTCCGTCGATGCAACACTGAGTTCGAGGAGCTTAACTGTTGCTCGTGCCACGTACCATGGCAGAGCAGGACAATAAATACATAATCAGTAAAAATCTTCATAAGAGATGAAGTAGACAGCTGGGTAAAGAAGGAGATGAACCACACACGCTGTCTACTTCATCTCTTATGAAGATTTTTACTGATTATGTATTTATTGTCCTGCTCTGCCATGGTACGTGGCACGAGCAACAGTTAAGCTCCTCGAACTCAGCGTTGCATCGACGGAGGAGAAAAGGTGTGAGGATCCTCCGGTCAGAGTTTGTCTTAAGTCGGGTTCAAGCTATCTCTCGGAGATTTGGTTTCATTTCCGATCTTTCTTCCCAGGACTCCGTTCTACCTTTCTCCATCCCTTCCGTGGCGCTGGTACTGACTTCGGCTCAGGGCCGGGGACTCGATGCGTGGACTCCACTGCAAGGTCACAGGTTTAACCCTGCGGTGCAACTTGCTGTTGAAGGCAAGGTTCTACTTCAGAGGATCCGGGCTACTTTTCAAAGCAGAGAGGATAGGGGCTACTTTTCAAAGCAGAGAACTGTGCTTCCAGCCAAATCCGTCCGCTCACCATTTCTCGGGCTGGGCTCAGAATATACGGTGCAGACAATATTGGGATTGTTCGCTTGTGCTATCTGTCAAACTGACATCACACCTAGTGAGGGCATGTTTGTGCATGCTGGATCCTTTTTTCAGGAAATATGCGCTGTTGGGAAGGCCCCTTTCTATGTTCAAGCTGTAAATTGAAGAAAGATGCAATGGAAGGCAAGCGATCATCAAGAGTGATAGCAACATAAATATCATTCGGGTTAGACTGAATGCACGTCCTATAACTATCTCATGTGATCTCAACTTCCAGACTTTGGAGGCCCTCATCAACTCTTATTATGCTCCCTCTAGTAGTGAGTACACTGAAAAATATCTTGAACTTCTTGTTCAATTACAGAGTGAGCAGCAGGATCAACACATCAGAAAGTAGAAAAGAATTGCAGTTCTCAGTTTTGATCCCTCGTCATTACAAGCTCTTTATTTTAGGTGATTCATGGGTAATTGTATTTTTTCCACTCTGCCATCCTTGGGTGTAATTTGGCTTTATCAGACTGAAAAGGTTCTATTCATTCTCTTCACAGGTTCTAATAGTGAACCTTTTGGTGTAGGAGGATGCAGTATAAACATTCGAGTATAGATTCAAAATGTGAATGGCACGCAATTCATCTAACTTTGTTAATCTAATCACTAACCTTCAAATACCC

Ace file of the UniGene sp_v3.0_unigene3222

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Probable protein phosphatase 2C 3 n=4 Tax=BEP clade RepID=P2C03_ORYSJ	-	-	1.0e-10	64%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	66%

Source	InterPros	Term	Type	Identity
Sma3	Protein phosphatase 2C-like	IPR001932	-	-
Sma3		IPR014045	-	-
Sma3	Protein phosphatase 2C	IPR015655	-	-

Source	Species	ID	Description	e value	Identity
ATG	Arabidoptis thaliana	AT1G47380.1	Protein phosphatase 2C family protein chr1:17373004-17375305 REVERSE LENGTH=428	1.0e-11	76%
RefSeq	Arabidopsis thaliana	NP_564504.1	putative protein phosphatase 2C 12 [Arabidopsis thaliana]	2.0e-11	76%
RefSeq	Populus trichocarpa	XP_002326927.1	predicted protein [Populus trichocarpa]	3.0e-11	67%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLF8

Fln msg: Overlapping hits, possible frame ERROR between 2372 and 2336, Unexpected STOP codon in 5 prime region, your sequence is shorter than subject: 220 - 436

Fln protein: MKIFTDYVFIVLLCHGTWHEQQLSSSNSALHRRRRKGVRILRSEFVLSRVQAISRRFGFISDLSSQDSVLPFSIPSVALVLTSAQGRGLDAWTPLQGHRFNPAVQLAVEGKVLLQRIRATFQSREDRGYFSKQRTVLPAKSVRSPFLGLGSEYTVQTILGLFACAICQTDITPSEGMFVHAGSxxxxxxxxxxxxxxCSSCKLKKDAMEGKRSSRVIAT*

Protein Length: 221

Fln nts: TTTAGGAGCCACAAATATCGACATTCACAATACTACGAAATAAAGCCGCACGCCTAAAGTAGGAAACCGTGCTATACACAAGCAGCGTGAGTCTCGGTGCATCAAACAGTAAACTTAGTAACAAATGGAGCTAACCAGATCTAACCTCTTCCTGAAGGGATCGCAAGGTCTGCCCCGAAAACAGACTTAAACTAAGAGCTCAAGAATCAGTTTACAGATACCTCAATGGACATTAGACTCCTTAGATTTAAATGTCAACGGAACCCTTGAATACAAGGGACAAGAGTACCCAGCAACAGCACAGAGCTGTTCGACCTTCACCACTTGCCATACATTCAACTTTGGAAATCTAAGAGCTAAGAGGCAGAATGCCTTAAGAGACCAACCATCCAGTTCCAAACAACCAAGAAACCGTGGTAGTTGCTTACCCAAGAAATGGTGAGCGGAGAACTAAAATAGGAAACAGTGCTATACAAAAACAGAGCGCATTTCTTAGATAATTTAACATCTCGGTGTACCGAACAGTAAACTTAGTAACAAGTGGAGCTAGCCAGACCCAACCCTTTCCTGAAGGGATTGCAAGGTCTCCCCGAAAACAGACAGTAAACTTAGTCACAAGTGGAGCTAACCAGACCTAACCCCTTCCTGAAGGGATTGCAAGGTCTCCCCGAAATCAGACTTAAATTAAGAGCTCAGGAATCAGTTTACAAATACCTCAATGGACATTAGACTCCTTAGATTTAAATGTCAACCGAACCCTTGAATACAACGGACAAGAGTACCCAGCAACAGCGCAGAGCTGTTCGATCTTCACCACTTCCCATACATTCAACATTGGAAATCTAAGAGCTAAGAAGCAGAATGCCTTAAGAGACCAACCATCCAGTTCCAAACAACCAAGAAACCGTGGTAGTTGCTTACCCGAGAAATGGTGAGCGGACGAATTTGGCTGAAAGCACAGTTCTCTGCTTTGAAAGGTAGCGCGAATCCTCTGAAGAAGAACCTTGCCTTCACCACGAAGTTGCAGCGCGGGGTAAACCTGTGACCTTGCAGTGGAGTCCACGAATCGAGTCCCCGGCCCTGAGCCGAAGTCAGTACCAGCGCCACGGAAGGGATGGAGAAAGGTAGAACGGAGTCCTGGGAAGAAAGATCGGAAATGAAACCAAATCTCCGAGAGATAGCTTGAACCCGACTTAAGACAAACTCTGACCGGAGGATCCTCACACCTTTTCTCCTCCGTCGATGCAACGCTGAGTTCGAGGAGCTTAACTGTATTTCCCTGTTCCTTGACAAAAGCCAAGAACCTGTATTTCCCTTGCCTTCACCGGGAAGTTGCAGCGCGGAGGTAAACCTGTGACCTTGCATGAAGTCCACGCATCTAACCGGGGGTAAACCTGTGACCTTGCAGTGGAGTCCACGCATCGAGTCCTCGGCCCTGAGCCGAAGTCAGTACCAGCGCCACGGAAGGGATGGAGAAAGGTAGAACGGAGTCCTGGGAAGAAAGATCGGAAATGAAACCAAATCTCCGAGAGATAGCTTGAACCCGACTTAAGACAAACTCTGACCGGAGGATCCTCACACCTTTTCTCCTCCGTCGATGCAACACTGCCTTTTCTCCTCCGTCGATGCAACACTGAGTTCGAGGAGCTTAACTGTTGCTCGTGCCACGTACCATGGCAGAGCAGGACAATAAATACATAATCAGTAAAAATCTTCATAAGAGATGAAGTAGACAGCTGGGTAAAGAAGGAGATGAACCACACACGCTGTCTACTTCATCTCTT_-_ATGAAGATTTTTACTGATTATGTATTTATTGTCCTGCTCTGCCATGGTACGTGGCACGAGCAACAGTTAAGCTCCTCGAACTCAGCGTTGCATCGACGGAGGAGAAAAGGTGTGAGGATCCTCCGGTCAGAGTTTGTCTTAAGTCGGGTTCAAGCTATCTCTCGGAGATTTGGTTTCATTTCCGATCTTTCTTCCCAGGACTCCGTTCTACCTTTCTCCATCCCTTCCGTGGCGCTGGTACTGACTTCGGCTCAGGGCCGGGGACTCGATGCGTGGACTCCACTGCAAGGTCACAGGTTTAACCCTGCGGTGCAACTTGCTGTTGAAGGCAAGGTTCTACTTCAGAGGATCCGGGCTACTTTTCAAAGCAGAGAGGATAGGGGCTACTTTTCAAAGCAGAGAACTGTGCTTCCAGCCAAATCCGTCCGCTCACCATTTCTCGGGCTGGGCTCAGAATATACGGTGCAGACAATATTGGGATTGTTCGCTTGTGCTATCTGTCAAACTGACATCACACCTAGTGAGGGCATGTTTGTGCATGCTGGATCCxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxTGTTCAAGCTGTAAATTGAAGAAAGATGCAATGGAAGGCAAGCGATCATCAAGAGTGATAGCAACATAAATATCATTCGGGTTAGACTGAATGCACGTCCTATAACTATCTCATGTGATCTCAACTTCCAGACTTTGGAGGCCCTCATCAACTCTTATTATGCTCCCTCTAGTAGTGAGTACACTGAAAAATATCTTGAACTTCTTGTTCAATTACAGAGTGAGCAGCAGGATCAACACATCAGAAAGTAGAAAAGAATTGCAGTTCTCAGTTTTGATCCCTCGTCATTACAAGCTCTTTATTTTAGGTGATTCATGGGTAATTGTATTTTTTCCACTCTGCCATCCTTGGGTGTAATTTGGCTTTATCAGACTGAAAAGGTTCTATTCATTCTCTTCACAGGTTCTAATAGTGAACCTTTTGGTGTAGGAGGATGCAGTATAAACATTCGAGTATAGATTCAAAATGTGAATGGCACGCAATTCATCTAACTTTGTTAATCTAATCACTAACCTTCAAATACCC

Fln Alignment:

Contig3222___LGSEYTVQTILGLFACAICQTDITPSEGMFVHAGSFxxxxxxxxxxxxLCSSCKLKKDAMEGKRSSRVIAT
B8LLF8______________LGSEYAVHTVSGLFACAVCQTDITPSEGISVHAGSFxxxxxxxxxxxxLCASCKLKKDAMEGKRSSRTTAT

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain