SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3196

Length: 2305 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene3196
ATGGGGATGGCCATGCTCAGCGATGCCCCTGCCAAAAGTCGAGTAGCTTTACTCTTTTTCTGTGTATTTTCGTAAGGCCAGTGATTAATACAGAGATTATACGCGTGATCACACGATTGGAGCACGAAGCTATTCGACATCCACAAAAATCGAAATGCCTAAATAAAGGTGTAAATCGGAATCCTCTTGAAACTGGAAACCAGACGTTTGAGTGCTGTAGAGCCTCTATTCAATTTGGGATTCACCATTCTCTCTCATTGCTGACCTAAATTTGCCCAATATATAAATGGTCTGATTACCAGGCCAAATGCATAAACTCAAAGATATTTGTGAACTACCACAGCCACTATTTTGAAATTAACTTGTACACTGCATTTTCTCTGGAAGCTATGACTTGCACCTTCAGCCGCCATTAACAGATTCAACTTACTAGATTATTCTAGCTGAACTGTGCATAGCTATGCGAGAAACATGTCGGATACAGACAATCTTGATCCAGAGTCTCGAGTTATTCATAACAACCACCAGCATCATAGTTTCTATCCTGATCGGCAAGCGCCGATCCATGCTGTTAATGCACATGCTCATGTAGCTGCACACCATGCCCCTATGCATGGGATACTGATGCAAGGCCAAAATGAGGGAGATCCTCACAGACATCAAGGAGCCCAATTTCAAGGAGTAGATAGTGGGCATATGCATATACATTACATGCACAGTGATGAGCATGGACATCCATTGCACCATAGCAATGACAATGGTGCTGGAGAAGAACAGGATGAAGGAGATGGAGACAATAATTGCATGGAGGAAGCAGATGTTCAATCAGATGGCGACAATCTCGCAGAACCCCAGTCGGTTGTCCCTGTACGCAGTCAGGGAACAAATCAACTTACACTCTCATATCAAGGCGAGGTCTATGTCTTTGATATGGTGGCACCAGAGAAGGTACAGCAAGTGCTTTTATTGTTGGGGGGTCGGGAAATACCAAATAGCATGGCTGGCATGCCCATTGCCACTCTTCATCATCAGAAGGGCTTGTCAGATGTTTCACATCGTTTAAATCAACCACAAAGACTTGCATCTCTTACAAGATTTCGAGAAAAGCGTAAGGAACGTTGTTTTGATAAAAAGATCCGTTACACTGTACGCAAAGAGGTTGCTCAAAGGATGCAACGCAACAAAGGTCAATTTACATCATACAAGTCTGATTCTAAGGATTTAGTCTCTGCTGGACATAAGTGGGATTCAGCTGAGGGTTGGGCTCCAAACACTAATGGGACACAACAAGAAGCTGTATGCCTTCATTGTGGCACTGGGGAGAGATCTACTCCAATGATGCGGCGTGGGCCAGTTGGACCAAGGACACTTTGCAATGCCTGTGGACTAGTGTGGGCCAACAAGGGAGTGCTGAGGGACCTTTCAAAAAGTTCCACATCTTTGGGAAGCCAGGAGCAATCGCAGAGCTCACATGAACAGAATGATGGGGGACCAGGAAGCCAGGAGACTGAGCTGGGTGAATAATTGAGTTACATTTCCTCCACCTTTTGTCCATAGTCTGTCATGACATACATGACAGAATCGCTTCTCTGTCGGTTCTGTTCTTATAGAAAATTGAAGAAGCACTTTAATACACTTCTGTTCATAAGGTGCTGCTTTAAAATTTTCCAGCAAGTGCTGGTGATGATCTTCTGACATCGGTTATTCTGTACAACTATTTTTGTATACAGTAGAATAATTATTCAGTCAGAAAGAGAGCATATCATATATGGGAAAAAATATAATTATTTTATAAGCTTCCATGTGGCCAAATGTGGTCCCTGCGACTCTAATACAGACATTAACAATTAGAAATACCCAATTGGGAGATGATCACACAAGTCATTATTCCTTATATGTTATACCGTTTTAGAAAAACAGAAGTAGCAGATAAAGGAAGATGTGATGAAGGGATATAAATAATGTTGTAGGTTTTTAAAATTCCCACATGAGAAAATCTGGTCTGTGACCAAAATACAGAATGATTAACCATTAAAAGTGATCCAGGTTGCTGGTTGATTGTATTAGGTACATACCTTTGTACTATTGTCAGCACAATGAAATCCGTTGAACTCAGACTCATGTAAAATAAAGAAAAGTAGGTGTAACTAACTGCCACATTTTTATCTAGGCACAGTAAATTTTCATCTGATAATTCTCAAGGAGAGTGCAGGATTTAGGCTTTTGACAAAACTTATTTGGGAGTAACTTTCACCATTGAACGTGGAAAGTCATTGGTCAAACTAAGATTATCTGAGGATATATA

Ace file of the UniGene sp_v3.0_unigene3196 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Male-specific transcription factor M88B7.2 n=1 Tax=Marchantia polymorpha RepID=Q6J3Q5_MARPO	-	-	0.0	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Sma3	GATA transcription factor 25	-	-	8.568e-15	-

Source	Gene names
Sma3	At1g51600; At3g21175; At4g24470; F19C24.17; F5D21.22; GSVIVT00001889001; GSVIVT00001890001; GSVIVT00015084001; GSVIVT00029575001; LOC_Os03g47970; LOC_Os03g52450; M88B7.1f; M88B7.2; MXL8.2; OSJNBb0072E24.6; Os02g0148500; Os03g0684000; Os06g0698900; OsI_058

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	sequence-specific DNA binding transcription factor activity	GO:0003700	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	sequence-specific DNA binding	GO:0043565	Molecular Function	-
Sma3	regulation of transcription, DNA-dependent	GO:0006355	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Zinc finger, GATA-type	IPR000679	-	-
Sma3	Tify	IPR010399	-	-
Sma3	CCT domain	IPR010402	-	-
Sma3	Zinc finger, NHR/GATA-type	IPR013088	-	-
Sma3	CO/COL/TOC1, conserved site	IPR018467	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G21175.1	ZML1, TIFY2B, GATA24 ZIM-like 1 chr3:7422832-7424598 FORWARD LENGTH=297	53%
RefSeq	Arabidopsis thaliana	NP_850618.1	GATA transcription factor 24 [Arabidopsis thaliana]	53%
RefSeq	Populus trichocarpa	XP_002316441.1	predicted protein [Populus trichocarpa]	67%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5AC32

Fln msg:

Fln protein: MSDTDNLDPESRVIHNNHQHHSFYPDRQAPIHAVNAHAHVAAHHAPMHGILMQGQNEGDPHRHQGAQFQGVDSGHMHIHYMHSDEHGHPLHHSNDNGAGEEQDEGDGDNNCMEEADVQSDGDNLAEPQSVVPVRSQGTNQLTLSYQGEVYVFDMVAPEKVQQVLLLLGGREIPNSMAGMPIATLHHQKGLSDVSHRLNQPQRLASLTRFREKRKERCFDKKIRYTVRKEVAQRMQRNKGQFTSYKSDSKDLVSAGHKWDSAEGWAPNTNGTQQEAVCLHCGTGERSTPMMRRGPVGPRTLCNACGLVWANKGVLRDLSKSSTSLGSQEQSQSSHEQNDGGPGSQETELGE*

Protein Length: 352

Fln nts: ATGGGGATGGCCATGCTCAGCGATGCCCCTGCCAAAAGTCGAGTAGCTTTACTCTTTTTCTGTGTATTTTCGTAAGGCCAGTGATTAATACAGAGATTATACGCGTGATCACACGATTGGAGCACGAAGCTATTCGACATCCACAAAAATCGAAATGCCTAAATAAAGGTGTAAATCGGAATCCTCTTGAAACTGGAAACCAGACGTTTGAGTGCTGTAGAGCCTCTATTCAATTTGGGATTCACCATTCTCTCTCATTGCTGACCTAAATTTGCCCAATATATAAATGGTCTGATTACCAGGCCAAATGCATAAACTCAAAGATATTTGTGAACTACCACAGCCACTATTTTGAAATTAACTTGTACACTGCATTTTCTCTGGAAGCTATGACTTGCACCTTCAGCCGCCATTAACAGATTCAACTTACTAGATTATTCTAGCTGAACTGTGCATAGCTATGCGAGAAAC_-_ATGTCGGATACAGACAATCTTGATCCAGAGTCTCGAGTTATTCATAACAACCACCAGCATCATAGTTTCTATCCTGATCGGCAAGCGCCGATCCATGCTGTTAATGCACATGCTCATGTAGCTGCACACCATGCCCCTATGCATGGGATACTGATGCAAGGCCAAAATGAGGGAGATCCTCACAGACATCAAGGAGCCCAATTTCAAGGAGTAGATAGTGGGCATATGCATATACATTACATGCACAGTGATGAGCATGGACATCCATTGCACCATAGCAATGACAATGGTGCTGGAGAAGAACAGGATGAAGGAGATGGAGACAATAATTGCATGGAGGAAGCAGATGTTCAATCAGATGGCGACAATCTCGCAGAACCCCAGTCGGTTGTCCCTGTACGCAGTCAGGGAACAAATCAACTTACACTCTCATATCAAGGCGAGGTCTATGTCTTTGATATGGTGGCACCAGAGAAGGTACAGCAAGTGCTTTTATTGTTGGGGGGTCGGGAAATACCAAATAGCATGGCTGGCATGCCCATTGCCACTCTTCATCATCAGAAGGGCTTGTCAGATGTTTCACATCGTTTAAATCAACCACAAAGACTTGCATCTCTTACAAGATTTCGAGAAAAGCGTAAGGAACGTTGTTTTGATAAAAAGATCCGTTACACTGTACGCAAAGAGGTTGCTCAAAGGATGCAACGCAACAAAGGTCAATTTACATCATACAAGTCTGATTCTAAGGATTTAGTCTCTGCTGGACATAAGTGGGATTCAGCTGAGGGTTGGGCTCCAAACACTAATGGGACACAACAAGAAGCTGTATGCCTTCATTGTGGCACTGGGGAGAGATCTACTCCAATGATGCGGCGTGGGCCAGTTGGACCAAGGACACTTTGCAATGCCTGTGGACTAGTGTGGGCCAACAAGGGAGTGCTGAGGGACCTTTCAAAAAGTTCCACATCTTTGGGAAGCCAGGAGCAATCGCAGAGCTCACATGAACAGAATGATGGGGGACCAGGAAGCCAGGAGACTGAGCTGGGTGAATAA___TTGAGTTACATTTCCTCCACCTTTTGTCCATAGTCTGTCATGACATACATGACAGAATCGCTTCTCTGTCGGTTCTGTTCTTATAGAAAATTGAAGAAGCACTTTAATACACTTCTGTTCATAAGGTGCTGCTTTAAAATTTTCCAGCAAGTGCTGGTGATGATCTTCTGACATCGGTTATTCTGTACAACTATTTTTGTATACAGTAGAATAATTATTCAGTCAGAAAGAGAGCATATCATATATGGGAAAAAATATAATTATTTTATAAGCTTCCATGTGGCCAAATGTGGTCCCTGCGACTCTAATACAGACATTAACAATTAGAAATACCCAATTGGGAGATGATCACACAAGTCATTATTCCTTATATGTTATACCGTTTTAGAAAAACAGAAGTAGCAGATAAAGGAAGATGTGATGAAGGGATATAAATAATGTTGTAGGTTTTTAAAATTCCCACATGAGAAAATCTGGTCTGTGACCAAAATACAGAATGATTAACCATTAAAAGTGATCCAGGTTGCTGGTTGATTGTATTAGGTACATACCTTTGTACTATTGTCAGCACAATGAAATCCGTTGAACTCAGACTCATGTAAAATAAAGAAAAGTAGGTGTAACTAACTGCCACATTTTTATCTAGGCACAGTAAATTTTCATCTGATAATTCTCAAGGAGAGTGCAGGATTTAGGCTTTTGACAAAACTTATTTGGGAGTAACTTTCACCATTGAACGTGGAAAGTCATTGGTCAAACTAAGATTATCTGAGGATATATA

Fln Alignment:

Contig3196___MSDTDNLDPESRVIHNNHQHHSFYPDRQAPIXXXXXXXXXXXXXAPMHGILMQGQNEGDPHRHQGAQFQGVDSGHMHIHYMHSDEHGHPLHHSXXXXXXXXXXXXXXXXNCMEEADVQSDGDNLAEPQSVVPVRSQGTNQLTLSYQGEVYVFDMVAPEKVQQVLLLLGGREIPNSMAGMPIATLHHQKGLSDVSHRLNQPQRLASLTRFREKRKERCFDKKIRYTVRKEVAQRMQRNKGQFTSYKSDSKDLVSAGHKWDSAE-GWAPNTNGTQQEAVCLHCGTGERSTPMMRRGPVGPRTLCNACGLVWANKGVLRDLXXXXXXXXXXXXXXXSHEQNDGGPGSQETELGE
D5AC32______________MSDTDNLDPESRVIHNHHQHHSFYPDRQAPIHAVNAHAHVAAHHVPMHGILMQGQNEGDPHRHQGAQFQGVDSGHMHIHYMHSDEHGHPLHHSNDNGAGEEQDEGDGDNNCMEEADVQSDGDNLGEPQSVVPVRSQGTNQLTLSYQGEVYVFDMVAPEKVQQVLLLLGGREIPNSMAGMPIASLHHQKGLSDVSHRLNQPQRLASLTRFREKRKERCFDKKIRYTVRKEVAQRMQRNKGQFTSYKADSKDLISAGHKWDPSEGGWTPNTNGTQQEAVCLHCGTGERSTPMMRRGPVGPRTLCNACGLVWANKGVLRDLSKSTTSLGSQEQSQSSHEQNDGGPGSQETERGE

SNPs (tot: 27)

Position	A %	C %	G %	T %	Probability
365		80		20	0.995493
477	87		12		0.992554
987		87		12	0.992554
1279	25			75	0.996473
1442		33	66		0.997452
1443	33		66		0.997452
1457	33		66		0.997452
1462		33	66		1.0
1680		80		20	0.999996
1754	10		90		0.90298
1876	85		14		0.993533
1902		16		83	0.994512
1990		16	83		0.994512
1991	16			83	0.994512
2083		12	87		0.992554
2084	12		87		0.992554
2085		87		12	0.992554
2113	85	14			0.993533
2114		14	85		0.993533
2115		14		85	0.993533
2116	14			85	0.993533
2121			83	16	0.994512
2124		20	80		0.995493
2250	66			33	1.0
2251	83	16			0.994512
2253			83	16	0.994512
2254	83			16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain