SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3186

Length: 1077 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene3186

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Os07g0673500 protein n=2 Tax=Oryza sativa Japonica Group RepID=Q0D3Q1_ORYSJ	-	-	0.0	67%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%
Sma3	Arginine/serine-rich splicing factor, putative	-	-	1.249e-13	-

Source	Gene names
Sma3	AT4G02430; AT4g02430; At1g02840; At1g02840/F22D16_30; At1g09140; At3g49430; At4g02430; At4g02430/T14P8_21; CHLREDRAFT_195847; CHLREDRAFT_195849; F22D16.16; F22D16_30; GSVIVT00027992001; GSVIVT00037180001; LOC_Os03g22380; Os01g0316600; Os03g0344100; Os05g0

Source	GOs	Term	Type	Identity
Sma3	nucleolus	GO:0005730	Cellular Component	-
Sma3	nuclear speck	GO:0016607	Cellular Component	-
Sma3	ribonucleoprotein complex	GO:0030529	Cellular Component	-
Sma3	interchromatin granule	GO:0035061	Cellular Component	-
Sma3	nucleotide binding	GO:0000166	Molecular Function	-
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	RNA splicing	GO:0008380	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	RNA recognition motif domain	IPR000504	-	-
Sma3	F-box domain, cyclin-like	IPR001810	-	-
Sma3	Nucleotide-binding, alpha-beta plait	IPR012677	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G49430.1	SRp34a, SR34a, At-SR34a SER/ARG-rich protein 34A chr3:18332668-18334829 FORWARD LENGTH=300	67%
RefSeq	Arabidopsis thaliana	NP_001078264.1	putative Pre-mRNA splicing factor SF2 [Arabidopsis thaliana]	67%
RefSeq	Populus trichocarpa	XP_002302710.1	predicted protein, partial [Populus trichocarpa]	71%

Full-Lengther Next Prediction

Fln status: N-terminus

Fln database: coniferopsida.fasta

Fln subject: B8LNB5

Fln msg: Distance to subject end: 55 aas, your sequence is shorter than subject: 208 - 263

Fln protein: MSSRMTRTLYVGNLPGDVREGEIEDLFYKYGRIIDIDLKVPPRPPGYCFIEFEDARDAEDAIRGRDGYNFDGHRIRVELAHGGRRTSSSLGRPSSYSSSVGGRGGRGGVSRHTDYRVVVTGLPSSASWQDLKDHMRRAGDVCYAEVFRDSNGTRGTVDYTNLEDMKYAIRKLDDTEFRNAFSRSYIQVKEYGPRRSISRSYSRSHSRS

Protein Length: 209

Fln nts: ACAAGGGAGGGGTGATGTATTTGGTTTCATTTGCCACAAAATCTTTGGTCGACCGAGTTTCTCTTTTGAAATTCTTCCGTTCCCTGACTTCGAAAATTTCAGGCTTTGCTGCCTGTTGCTGTTTGATGCTGTCACGGGACTTCGAGCACGGGGCAGCGCGACCAGTTGGGGATTTTTATCGTTTTCAGTTGCCCGCTTTCATTTCTATTGCCCGCAAGGTCCTGTGTCTTTGTCGCGGTGGATTTCTGGAGAAGTTAAGATACAAGGCGCTTTGGACAAATCAAGGAGCTTTGCACTCTTAAGGTAGAGAGAGTAAGTGGGAGGGAAAGTTCAAAGAAGCAATGTGGGCAGTGCGACGTGTTGGGGATTTTTATGGTTTTCAGTTGCTTGGTTTCATTTCTGTTGGCGGCCCGGCAGAAGCTATATTGGTAGAGCTTTATAAGCCCACTGACA_-_ATGAGTAGCCGCATGACCCGAACTCTCTATGTTGGCAATTTGCCTGGCGATGTCCGAGAAGGGGAAATAGAAGATCTCTTTTATAAGTATGGGCGAATTATTGACATTGATCTGAAGGTTCCTCCACGACCTCCTGGCTATTGTTTCATTGAGTTTGAAGATGCACGTGATGCTGAAGATGCTATTCGTGGCCGTGATGGATATAACTTTGATGGTCATCGAATACGGGTAGAGCTTGCCCATGGGGGTCGAAGGACGTCTTCTTCTCTAGGTCGACCCAGTAGCTACAGTAGCAGTGTTGGTGGGCGTGGTGGGCGTGGCGGAGTCTCTAGACACACTGACTATCGCGTTGTTGTGACAGGATTACCTTCATCAGCATCGTGGCAGGACCTGAAGGATCACATGCGACGGGCTGGTGATGTCTGCTATGCTGAAGTGTTTCGTGATAGCAATGGTACACGTGGAACTGTGGACTACACCAACCTCGAGGACATGAAATATGCTATCAGGAAACTGGATGATACTGAATTCCGGAATGCCTTCTCTCGATCTTATATACAGGTGAAGGAATATGGACCTCGGAGGAGCATCTCTAGAAGTTATAGCCGAAGTCACAGCCGCAGC

Fln Alignment:

Contig3186___MSSRMTRTLYVGNLPGDVREGEIEDLFYKYGRIIDIDLKVPPRPPGYCFIEFEDARDAEDAIRGRDGYNFDGHRIRVELAHXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXHTDYRVVVTGLPSSASWQDLKDHMRRAGDVCYAEVFRDSNGTRGTVDYTNLEDMKYAIRKLDDTEFRNAFSRSYIQVKEYGP
B8LNB5______________MSSRMTRTLYVGNLPGDVREGEIEDLFYKYGRIIDVDLKVPPRPPGYCFIEFEDARDAEDAIRGRDGYNFDGHRIRVEFAHGGRRTSSSLGRPSSYSSIAGGRGGRGGVTRHTDYRVLVTGLPSSASWQDLKDHMRRAGDVCYAEVFRDSNGTRGTVDYTNLEDMKYAIRKLDDSEFRNAFSRSYIQVKEYGP

SNPs (tot: 2)

Position	A %	C %	G %	T %	Probability
260	66		33		0.997452
261		33		66	0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain