SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3160

Length: 2620 nt

UniGene Fasta

>sp_v3.0_unigene3160
AGCCGGTGCCGAAACCGGGTGGTATACTGGCTCCGGGGATGTGAAATACCACCTTGGGACTTCATATGACCGGCCGACGCGTGGTGGTAAGCATATTCATCTCTCTCTGGTTGCCAATCCCAGCCATCTCGAGGCAGTGGATCCTGTCGTTATAGGAAAAACAAGGGCAAAGCAGTATTATTCTACCGACAAGGATCGGATAAAGAATATGGGGATTTTGATTCATGGAGACGGAAGTTTTGCCGGACAAGGGGTGGTTTACGAGACTTTGCATCTCAGTGCTTTGCCGAACTACACTACTGGCGGGACCATTCATATTGTGATTAATAATCAGGTTGCTTTCACTACTGATCCTGAATCTGGCAGATCCTCGCAGTATTGTACTGATGCCGCAAAGGCTTTGAGTGTGCCCATTTTCCATGTGAATGGCGATGATGTTGAAGCTGTCGTGCATGCATGTGAACTTGCCGCAGAATGGCGGCAGACCTTCCAGTCTGATGTCGTTGTTGATCTTGTTTGTTATCGCAGGTTTGGGCATAATGAGATTGATGAACCATCTTTCACTCAAACGAAGATGTATCAGGTTATTAGAAGCCATCCACCAGCACTAGATCTGTATGAAAAGAAGCTCATAGAATCAGGGGAGTTGTCAAAAGAAGAAATTGACAAAATGCGTATAAAGGTTTTGTCAATTTTGAATGAAGAGTTTGTAAACAGCAAAGATTATGTTCCAAAAACACGAGATTGGCTTGGAGCCTTTTGGCAGGCTTCAAGTCGCCAGAGCAAATATCTGGAGTTCGTAATACAGGAGTCAAACCAGAGATATTAAAGTGTGTTGGAAAAACCATAACCACTCTTCCAGAGACGTTTAAGCCTCATAGAGCCATCAAGAGAATCTATGATCAACGAGCTCAAATGATTGAAGCAGGACAGGGGGTTGACTGGGCTACTGCTGAAGCACTTGCTTTTGCAACATTGCTCATAGAAGGAAATCATGTGCGGCTGAGTGGGCAGGATGTTGAGAGGGGGACATTCAGTCACCGACATTCTGTGGTTCATGATCAAGAAACAGGAGAAAGATATTGCCCTCTGGATAATGTTATTGACAACCAGCCCAAGGAGATGTTTACAGTGAGTAACAGCTCTTTGTCGGAATTTGGTGTTTTAGGCTTTGAGATGGGTTATTCTTCAGAAAATCCAAATTCATTGGTCCTTTGGGAGGCGCAATTTGGTGATTTTGCTAATGGCGCACAAGTTATCTTCGATCAGTTTTTAAGCAGTGGAGAAGCCAAATGGCTTCGCCAAAGCGGACTTGTTGTTCTTCTTCCTCATGGTTATGATGGGCAGGGTCCAGAACATTCCAGTGCAAGATTGGAACGGTTTCTTCAGATGAGTGACGACAATCCATTTGTTATTCCTGAGATGGATCCTACATTAAGCAAGCAAATTCAGGAATGCAATTTGCAAGTTGTAAACGTGACAACCCCTGCCAATTATTTCCATGTTCTTCGTCGTCAGATACATCGTGATTTTCGTAAACCTTTAGTTTTGATGGCTCCAAAGAATCTTCTCCGTCTTCAGGCCTGTAAGTCAAATCTTTCTGAATTTGATGATGTACAAGGCCATCCTGGATTTGACAAACAGGGAACTCAATTCAAACGTCTCATAAAGGATCAGAATGATCACTCTGATCAGGAGGAGGGCATTCGGCGTCTTATACTTTGCTCTGGAAAGGTATATTATGAGCTTGTTGAAGAAAGGGAAAGAGTGAATGGAAAGGATGTTGCTATCTGTCGTGTGGAACAACTCTGCCCATTCCCATACGACCTAGTCCAGAGAGAGCTCAAGCGATATCCAAATGCAGAAATTCTCTGGTGCCAGGAGGAGCCCATGAATATGGGAGCATATCATTACATCACTCCACGTCTTCTAACTGCAATGAGGGCAATAAATCGGGGCACATATCATGATATAAAGTATGTAGGTCGAGCTCCATCTGCTGCATCAGCAACTGGGTTTTCCCAGGTACATGTACAAGAGCAGAGGGAATTGGTGCAGAAAACACTACAGTTAGCTCCCATATAGTCCTAGCATATTGAAGTTTGCATCACAGCTATTCGAGTTTTGAAAGAGTTGTGCTGTTGCTACATTCGGAGAGTTATTGATAAAAAGTTTCCTGCTGCCTTCGTAAAATTTTGTTATGGATCTAAGATATAGGTTTTGTCCTTCAGTTCTGTAATTATTCTGAGAGTGTAGTTGTGATGTCCTTTAATTTGACAGTTTCGATGCTTTAAAACTCAAAGTGGCATGTTCCTCTTCATGGGGTGTGCCACAACATATAGGGTCAGTAAAGTTCTCTAGATGCCAATTAAGAGTCTGTGTATGAAGATGGTACATGCAAAAGTCTAATATTGGCAGATTGGGAGGGTAAAAGACAATATTTTTCGGAAATGCCTTCTAAATCAAGTTTAGGAAGCTCCAGATCCTCCCATTCGACCAACTTTTACTTTTCGATCTGATGAAATGCTTGGTTGCATTTTATCAATTTCATAATTATAATATTACTCTGAAAACCAATGGAAGTATTGTTGCTTGACAACACTATTATAGGAAAATTAGG

Ace file of the UniGene sp_v3.0_unigene3160

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	2-oxoglutarate dehydrogenase, E1 component [Arabidopsis thaliana]	-	-	0.0	78%
FL-Next	tr=2-oxoglutarate dehydrogenase, putative; Ricinus communis (Castor bean).	-	-	0.0	83%
Sma3	2-oxoglutarate dehydrogenase, putative	-	-	1.003e-08	-

Source	ECs	Term	Type	e value	Identity
Sma3	Oxoglutarate dehydrogenase (succinyl-transferring).	EC:1.2.4.2	-	3.337e-27	-

Source	KEGGs	Term	e value	Identity
Sma3	Citrate cycle (TCA cycle)	00020	3.337e-27	%
Sma3	Lysine degradation	00310	3.337e-27	%
Sma3	Tryptophan metabolism	00380	3.337e-27	%
Sma3	Biosynthesis of phenylpropanoids	01061	3.337e-27	%
Sma3	Biosynthesis of terpenoids and steroids	01062	3.337e-27	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	3.337e-27	%
Sma3	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	3.337e-27	%
Sma3	Biosynthesis of alkaloids derived from histidine and purine	01065	3.337e-27	%
Sma3	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	3.337e-27	%
Sma3	Biosynthesis of plant hormones	01070	3.337e-27	%
Sma3	Metabolic pathways	01100	3.337e-27	%
Sma3	Biosynthesis of secondary metabolites	01110	3.337e-27	%

Source	Gene names
Sma3	At3g55410; At5g65750; CHLREDRAFT_79471; F6H11.130; GSVIVT00018534001; MICPUCDRAFT_19691; MICPUCDRAFT_35900; MICPUN_104793; MICPUN_82522; OGD1; OGDH; OSIGBa0096P03.7; OSTLU_19841; OSTLU_49109; Os04g0390000; Os07g0695800; OsI_15669; OsJ_14584; Ot03g02230; O

Source	GOs	Term	Type	Identity
Sma3	intracellular	GO:0005622	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	nuclease activity	GO:0004518	Molecular Function	-
Sma3	oxoglutarate dehydrogenase (succinyl-transferring) activity	GO:0004591	Molecular Function	-
Sma3	thiamine pyrophosphate binding	GO:0030976	Molecular Function	-
Sma3	glycolysis	GO:0006096	Biological Process	-
Sma3	DNA repair	GO:0006281	Biological Process	-
Sma3	oxidation-reduction process	GO:0055114	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Excinuclease ABC, C subunit, N-terminal	IPR000305	-	-
Sma3	Cytosolic fatty-acid binding	IPR000463	-	-
Sma3	Dehydrogenase, E1 component	IPR001017	-	-
Sma3	Transketolase-like, pyrimidine-binding domain	IPR005475	-	-
Sma3	2-oxoglutarate dehydrogenase, E1 component	IPR011603	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G65750.1	2-oxoglutarate dehydrogenase, E1 component chr5:26304212-26307947 FORWARD LENGTH=1025	82%
RefSeq	Arabidopsis thaliana	NP_201376.1	2-oxoglutarate dehydrogenase, E1 component [Arabidopsis thaliana]	82%
RefSeq	Populus trichocarpa	XP_002315242.1	predicted protein [Populus trichocarpa]	84%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: B9SR46

Fln msg: Overlapping hits, possible frame ERROR between 763 and 763, your sequence is shorter than subject: 695 - 1021

Fln protein: AGAETGWYTGSGDVKYHLGTSYDRPTRGGKHIHLSLVANPSHLEAVDPVVIGKTRAKQYYSTDKDRIKNMGILIHGDGSFAGQGVVYETLHLSALPNYTTGGTIHIVINNQVAFTTDPESGRSSQYCTDAAKALSVPIFHVNGDDVEAVVHACELAAEWRQTFQSDVVVDLVCYRRFGHNEIDEPSFTQTKMYQVIRSHPPALDLYEKKLIESGELSKEEIDKMRIKVLSILNEEFVNSKDYVPKTRDWLGAFxxGFKSPEQISGVRNTGVKPEILKCVGKTITTLPETFKPHRAIKRIYDQRAQMIEAGQGVDWATAEALAFATLLIEGNHVRLSGQDVERGTFSHRHSVVHDQETGERYCPLDNVIDNQPKEMFTVSNSSLSEFGVLGFEMGYSSENPNSLVLWEAQFGDFANGAQVIFDQFLSSGEAKWLRQSGLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLSKQIQECNLQVVNVTTPANYFHVLRRQIHRDFRKPLVLMAPKNLLRLQACKSNLSEFDDVQGHPGFDKQGTQFKRLIKDQNDHSDQEEGIRRLILCSGKVYYELVEERERVNGKDVAICRVEQLCPFPYDLVQRELKRYPNAEILWCQEEPMNMGAYHYITPRLLTAMRAINRGTYHDIKYVGRAPSAASATGFSQVHVQEQRELVQKTLQLAPI*

Protein Length: 696

Fln nts: AGCCGGTGCCGAAACCGGGTGGTATACTGGCTCCGGGGATGTGAAATACCACCTTGGGACTTCATATGACCGGCCGACGCGTGGTGGTAAGCATATTCATCTCTCTCTGGTTGCCAATCCCAGCCATCTCGAGGCAGTGGATCCTGTCGTTATAGGAAAAACAAGGGCAAAGCAGTATTATTCTACCGACAAGGATCGGATAAAGAATATGGGGATTTTGATTCATGGAGACGGAAGTTTTGCCGGACAAGGGGTGGTTTACGAGACTTTGCATCTCAGTGCTTTGCCGAACTACACTACTGGCGGGACCATTCATATTGTGATTAATAATCAGGTTGCTTTCACTACTGATCCTGAATCTGGCAGATCCTCGCAGTATTGTACTGATGCCGCAAAGGCTTTGAGTGTGCCCATTTTCCATGTGAATGGCGATGATGTTGAAGCTGTCGTGCATGCATGTGAACTTGCCGCAGAATGGCGGCAGACCTTCCAGTCTGATGTCGTTGTTGATCTTGTTTGTTATCGCAGGTTTGGGCATAATGAGATTGATGAACCATCTTTCACTCAAACGAAGATGTATCAGGTTATTAGAAGCCATCCACCAGCACTAGATCTGTATGAAAAGAAGCTCATAGAATCAGGGGAGTTGTCAAAAGAAGAAATTGACAAAATGCGTATAAAGGTTTTGTCAATTTTGAATGAAGAGTTTGTAAACAGCAAAGATTATGTTCCAAAAACACGAGATTGGCTTGGAGCCTTTxxxxxxGGCTTCAAGTCGCCAGAGCAAATATCTGGAGTTCGTAATACAGGAGTCAAACCAGAGATATTAAAGTGTGTTGGAAAAACCATAACCACTCTTCCAGAGACGTTTAAGCCTCATAGAGCCATCAAGAGAATCTATGATCAACGAGCTCAAATGATTGAAGCAGGACAGGGGGTTGACTGGGCTACTGCTGAAGCACTTGCTTTTGCAACATTGCTCATAGAAGGAAATCATGTGCGGCTGAGTGGGCAGGATGTTGAGAGGGGGACATTCAGTCACCGACATTCTGTGGTTCATGATCAAGAAACAGGAGAAAGATATTGCCCTCTGGATAATGTTATTGACAACCAGCCCAAGGAGATGTTTACAGTGAGTAACAGCTCTTTGTCGGAATTTGGTGTTTTAGGCTTTGAGATGGGTTATTCTTCAGAAAATCCAAATTCATTGGTCCTTTGGGAGGCGCAATTTGGTGATTTTGCTAATGGCGCACAAGTTATCTTCGATCAGTTTTTAAGCAGTGGAGAAGCCAAATGGCTTCGCCAAAGCGGACTTGTTGTTCTTCTTCCTCATGGTTATGATGGGCAGGGTCCAGAACATTCCAGTGCAAGATTGGAACGGTTTCTTCAGATGAGTGACGACAATCCATTTGTTATTCCTGAGATGGATCCTACATTAAGCAAGCAAATTCAGGAATGCAATTTGCAAGTTGTAAACGTGACAACCCCTGCCAATTATTTCCATGTTCTTCGTCGTCAGATACATCGTGATTTTCGTAAACCTTTAGTTTTGATGGCTCCAAAGAATCTTCTCCGTCTTCAGGCCTGTAAGTCAAATCTTTCTGAATTTGATGATGTACAAGGCCATCCTGGATTTGACAAACAGGGAACTCAATTCAAACGTCTCATAAAGGATCAGAATGATCACTCTGATCAGGAGGAGGGCATTCGGCGTCTTATACTTTGCTCTGGAAAGGTATATTATGAGCTTGTTGAAGAAAGGGAAAGAGTGAATGGAAAGGATGTTGCTATCTGTCGTGTGGAACAACTCTGCCCATTCCCATACGACCTAGTCCAGAGAGAGCTCAAGCGATATCCAAATGCAGAAATTCTCTGGTGCCAGGAGGAGCCCATGAATATGGGAGCATATCATTACATCACTCCACGTCTTCTAACTGCAATGAGGGCAATAAATCGGGGCACATATCATGATATAAAGTATGTAGGTCGAGCTCCATCTGCTGCATCAGCAACTGGGTTTTCCCAGGTACATGTACAAGAGCAGAGGGAATTGGTGCAGAAAACACTACAGTTAGCTCCCATATAGTCCTAGCATATTGAAGTTTGCATCACAGCTATTCGAGTTTTGAAAGAGTTGTGCTGTTGCTACATTCGGAGAGTTATTGATAAAAAGTTTCCTGCTGCCTTCGTAAAATTTTGTTATGGATCTAAGATATAGGTTTTGTCCTTCAGTTCTGTAATTATTCTGAGAGTGTAGTTGTGATGTCCTTTAATTTGACAGTTTCGATGCTTTAAAACTCAAAGTGGCATGTTCCTCTTCATGGGGTGTGCCACAACATATAGGGTCAGTAAAGTTCTCTAGATGCCAATTAAGAGTCTGTGTATGAAGATGGTACATGCAAAAGTCTAATATTGGCAGATTGGGAGGGTAAAAGACAATATTTTTCGGAAATGCCTTCTAAATCAAGTTTAGGAAGCTCCAGATCCTCCCATTCGACCAACTTTTACTTTTCGATCTGATGAAATGCTTGGTTGCATTTTATCAATTTCATAATTATAATATTACTCTGAAAACCAATGGAAGTATTGTTGCTTGACAACACTATTATAGGAAAATTAGG

Fln Alignment:

Contig3160___ETGWYTGSGDVKYHLGTSYDRPTRGGKHIHLSLVANPSHLEAVDPVVIGKTRAKQYYSTDKDRIKNMGILIHGDGSFAGQGVVYETLHLSALPNYTTGGTIHIVINNQVAFTTDPESGRSSQYCTDAAKALSVPIFHVNGDDVEAVVHACELAAEWRQTFQSDVVVDLVCYRRFGHNEIDEPSFTQTKMYQVIRSHPPALDLYEKKLIESGELSKEEIDKMRIKVLSILNEEFVNSKDYVPKTRDWLGAFWAGFKSPEQISGVRNTGVKPEILKCVGKTITTLPETFKPHRAIKRIYDQRAQMIEAGQGVDWXXXXXXXXXXXXIEGNHVRLSGQDVERGTFSHRHSVVHDQETGERYCPLDNVIDNQPKEMFTVSNSSLSEFGVLGFEMGYSSENPNSLVLWEAQFGDFANGAQVIFDQFLSSGEAKWLRQSGLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPFVIPEMDPTLSKQIQECNLQVVNVTTPANYFHVLRRQIHRDFRKPLVLMAPKNLLRLQACKSNLSEFDDVQGHPGFDKQGTQFKRLIKDQNDHSDQEEGIRRLILCSGKXXXXXXXXXXXXNGKDVAICRVEQLCPFPYDLVQRELKRYPNAEILWCQEEPMNMGAYHYITPRLLTAMRAINRGTYHDIKYVGRAPSAASATGFSQVHVQEQRELVQKTLQLAPI
B9SR46______________EVGLYTGTGDVKYHLGTSYDRPTRGGKRIHLSLVANPSHLEAVDPVVVGKTRAKQYYSNDEDRIKNMGILIHGDGSFAGQGVVYETLHLSALPNYSTGGTIHIVVNNQVAFTTDPTAGRSSQYCTDVAKALNAPIFHVNGDDVEAVVHACELAAEWRQTFHSDVVVDLVCYRRFGHNEIDEPSFTQPKMYQVIRNHPSSLQIYKNKLLESGQVGEEDISRIQEKVITILNEEFLASKDYVPKRRDWLSSHWAGFKSPEQLSRIRNTGVQPEILKNVGKAITTIPDNFKPHRAVKKVYEQRAQMIETGEGIDWAVAEALAFATLLVEGNHVRLSGQDVERGTFSHRHSVIHDQETGEKYCPLDHVIMNQNEEMFTVSNSSLSEFGVLGFELGYSMESPNSLVIWEAQFGDFSNGAQVIFDQFLSSGESKWLRQTGLVVLLPHGYDGQGPEHSSARLERFLQMSDDNPCVIPEMEPTLRKQIQECNWQVVNVTTPANYFHVLRRQLHRDFRKPLIVMAPKNLLRHKDCKSNLSEFDDVQGHPGFDKQGTRFKRLIKDQNDHSDLEEGIRRLVLCSGKVYYELDEERKKIGAKDVAICRVEQLCPFPYDLIQRELKRYPNAEIVWCQEEPMNMGAYNYIAPRLCTAMKALERGSVEDIKYVGRAPSAATATGFYQVHVKEQSELVQKAMQPEPI

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
833		33		66	1.0
974	75			25	0.996473
975		75	25		0.996473
976	75		25		0.996473
977			25	75	0.996473
1793		66		33	0.997452
2134	83	16			0.994512
2137		16		83	0.994512
2141	16	83			0.994512
2142		16		83	0.994512
2143		16	83		0.994512
2149	83		16		0.994512
2151	83			16	0.994512
2152			16	83	0.994512
2154		33		66	1.0
2155	16		83		0.994512
2156		16	83		0.994512
2157	83			16	0.994512
2158		16	83		0.994512
2175		28		71	1.0
2176			14	85	0.993533
2179		85	14		0.993533
2185		85	14		0.993533
2190	14		85		0.993533
2191		14		85	0.993533
2192	85			14	0.993533
2193	85	14			0.993533
2244	90	10			0.90298
2245			10	90	0.90298
2250	90			10	0.90298
2253		10	90		0.90298
2254		10		90	0.90298
2255			90	10	0.90298
2402	11	88			0.923564

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain