SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3137

Length: 2306 nt

UniGene Fasta

>sp_v3.0_unigene3137
ATACCACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGACCCGGCGATAGATAGCATTACAGTCCCATGACACCAAACCCCATTGTAAACCCAACAAGCAGATGGTCCAAATTGTCATTCTAGGGCGACGACTCCCCAATTGACCTCACCCTCTAGCGGCAGCCATTGGAAAAGGGTCGAAATTAAAAAAATATGTATTTGGTAGGAACACAAACACTGGGCCACAAAACTTCCACTCAGAAGATAACAGGCCATAGCTACCCTCCAAACTGCCATAATCTTTGATTATTTATTCGCCATTCTAAATTACAACAACAACAATATCCTAAGTGTGTATTCTGAGATCCATTCATCCATCTATCCATGGCAGCAATGGCAGGGAGATGGAGAGGCCAATTGGCTCTGATCCACAAAGCCTTGAGACCCACTTCTTCTTCCGAGGGTTTGGGAAGATGTGTGGGAGCTCTGCGAACATATTCATCATCATCAGCCGAAGAGAATGATGTTGTTGTGGTCGGAGGAGGCCCGGGAGGGTACGTTGCCGCCATTAAAGCAGCTCAGCTCGGTCTCAAGACGGCCTGCATAGAGAAACGCGGCACTCTGGGAGGTACCTGTCTCAATGTGGGATGCATCCCCTCTAAGGCATTGCTTCATTCCTCGCACATGTTTCATGAAGCTAAGCATGCATTTGCTGGCCATGGTGTGAAAGTGGGACAAGTGGAAATTGATATCCCTGCAATGATGGCTCAGAAAGAAAAGTCTGTTACTGGTCTGACAAAAGGAATTGAAGGACTTTTTAAGAAGAATAAAGTCACTTATGTTAAAGGTGCTGGTAAGATTATATCTGGAAATGAGGTGTCAGTGGATCTTCCTGATGGTAGTAGCAGTATAGTTAAAGGAAAACATATCATCATAGCAACTGGTTCAGATGTGAAGCCCCTTCCTGGAATCACTATTGATGAAAAGAAGATTGTTTCATCCACAGGAGCACTATCATTGACTGAGGTTCCGAAGAAGCTTGTAGTTATTGGTGCAGGTTACATTGGCTTAGAAATGGGTTCAGTATGGGGAAGGCTGGGTTCAGAAGTCACTGTTGTTGAATTTGCTCCTGAGATAGTTCCTACCATGGATGCAGAGGTACGGAGAACTTTCCAAAGAACATTAGAAAAACAGAAAATGAAGTTCATGTTGAAAACTAAGGTGATTGGCGTTGATGCATCAGGAACAGGGGTAAAACTGACATTGGAACCGGCTGCAGGAGGTGAACAGACCACTCTTGAGGCTGATGTAGTTCTTGTTTCTGCTGGCAGATCACCTTATACCAAAGGTCTTGGACTGGAAGAGCTTGGAGTAAAACTGGATAGAATGGGACGTGTGGAAGTTGATGATCATTTCAGGACAAATATTCCTGGAATTTATGCTATTGGTGATGTGATTCCTGGTCCCATGCTTGCACACAAGGCTGAAGAAGATGGCTTTGCCTGTGCAGAGCTTATTGCAGGAAAACCTGGACATGTGGACTATGACACTGTACCTGGAATTGTTTATACACATCCAGAGGTAGCTTCAGTAGGAAAGACAGAGGAGCAGGTCAAGGCTCTGAATACCCCATACAAAGTTGGAAAGTTCCCCTTTATGGCAAACAGTAGGGCTAGAACTATTGATGATGCAGATGGTTTAGTGAAAATAATTGCAGAGAAAGAAACTGACAAGATCCTTGGCGTGCACATTATGGGTCCAAACGCTGGGGAGATGATTCATGAAGCTGTTATTGCTTTACAATATGGAGCATCTAGTGAAGATATTGCTAGAACCTGTCATGGACACCCAACACTCAGTGAAGCTGTTAAAGAAGCTGCCATGGCAACATTTGACAAGCCTATCCACATTTAGTGTGGTGGATATTTTTTCTGGAACCAGTTATCATAGATTTATTTTTCATTTGGATATGTAATTTTCCTACTTAAAAATTGGACAGCATCCACAAGAAGTTTTCATGGGATGGTTTCACAATTCTGTTAGGAAATATGATTCATTTCATAGTTCTAAAACAGACTTTTGACAAGTATGAAGAAATGAGTTGTCATATGCAATTGAATAAAGACCATATTTCAAATTACATAAGAATTTGAAAATGCTGTAAACCTGTTGATTACTTTTTGAGATAAATTAACAGTGTGACAGTGATGTTTAATTCTTGAATCTTGATATACGTTGTGGATAACAACAAACATGTTCAGCCTATCTCTGCAGGTGATTGAAGCCTATTTTTTTGTGAATTCTAGTTTCAACTTATTGGG

Ace file of the UniGene sp_v3.0_unigene3137

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Dihydrolipoyl dehydrogenase n=2 Tax=Picea sitchensis RepID=B8LLJ4_PICSI	-	-	0.0	92%
FL-Next	sp=Dihydrolipoyl dehydrogenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	96%

Source	ECs	Term	Type	e value	Identity
Sma3	Dihydrolipoyl dehydrogenase.	EC:1.8.1.4	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Glycolysis / Gluconeogenesis	00010	%
Sma3	Citrate cycle (TCA cycle)	00020	%
Sma3	Glycine, serine and threonine metabolism	00260	%
Sma3	Valine, leucine and isoleucine degradation	00280	%
Sma3	Pyruvate metabolism	00620	%
Sma3	Biosynthesis of phenylpropanoids	01061	%
Sma3	Biosynthesis of terpenoids and steroids	01062	%
Sma3	Biosynthesis of alkaloids derived from shikimate pathway	01063	%
Sma3	Biosynthesis of alkaloids derived from ornithine, lysine and nicotinic acid	01064	%
Sma3	Biosynthesis of alkaloids derived from histidine and purine	01065	%
Sma3	Biosynthesis of alkaloids derived from terpenoid and polyketide	01066	%
Sma3	Biosynthesis of plant hormones	01070	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	InterPros	Term	Type	Identity
Sma3	FAD-dependent pyridine nucleotide-disulphide oxidoreductase	IPR013027	-	-
Sma3	Mercuric reductase	IPR000815	-	-
Sma3	Dihydrolipoamide dehydrogenase	IPR006258	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, dimerisation	IPR004099	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, class I, active site	IPR012999	-	-
Sma3	Pyridine nucleotide-disulphide oxidoreductase, NAD-binding domain	IPR001327	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G48030.1	mtLPD1 mitochondrial lipoamide dehydrogenase 1 chr1:17717432-17719141 REVERSE LENGTH=507	78%
RefSeq	Arabidopsis thaliana	NP_175237.1	dihydrolipoyl dehydrogenase 1 [Arabidopsis thaliana]	78%
RefSeq	Populus trichocarpa	XP_002311367.1	precursor of dehydrogenase dihydrolipoamide dehydrogenase 1 [Populus trichocarpa]	79%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LLJ4

Fln msg:

Fln protein: MAAMAGRWRGQLALIHKALRPTSSSEGLGRCVGALRTYSSSSAEENDVVVVGGGPGGYVAAIKAAQLGLKTACIEKRGTLGGTCLNVGCIPSKALLHSSHMFHEAKHAFAGHGVKVGQVEIDIPAMMAQKEKSVTGLTKGIEGLFKKNKVTYVKGAGKIISGNEVSVDLPDGSSSIVKGKHIIIATGSDVKPLPGITIDEKKIVSSTGALSLTEVPKKLVVIGAGYIGLEMGSVWGRLGSEVTVVEFAPEIVPTMDAEVRRTFQRTLEKQKMKFMLKTKVIGVDASGTGVKLTLEPAAGGEQTTLEADVVLVSAGRSPYTKGLGLEELGVKLDRMGRVEVDDHFRTNIPGIYAIGDVIPGPMLAHKAEEDGFACAELIAGKPGHVDYDTVPGIVYTHPEVASVGKTEEQVKALNTPYKVGKFPFMANSRARTIDDADGLVKIIAEKETDKILGVHIMGPNAGEMIHEAVIALQYGASSEDIARTCHGHPTLSEAVKEAAMATFDKPIHI*

Protein Length: 511

Fln nts: ATACCACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGACCCGGCGATAGATAGCATTACAGTCCCATGACACCAAACCCCATTGTAAACCCAACAAGCAGATGGTCCAAATTGTCATTCTAGGGCGACGACTCCCCAATTGACCTCACCCTCTAGCGGCAGCCATTGGAAAAGGGTCGAAATTAAAAAAATATGTATTTGGTAGGAACACAAACACTGGGCCACAAAACTTCCACTCAGAAGATAACAGGCCATAGCTACCCTCCAAACTGCCATAATCTTTGATTATTTATTCGCCATTCTAAATTACAACAACAACAATATCCTAAGTGTGTATTCTGAGATCCATTCATCCATCTATCC_-_ATGGCAGCAATGGCAGGGAGATGGAGAGGCCAATTGGCTCTGATCCACAAAGCCTTGAGACCCACTTCTTCTTCCGAGGGTTTGGGAAGATGTGTGGGAGCTCTGCGAACATATTCATCATCATCAGCCGAAGAGAATGATGTTGTTGTGGTCGGAGGAGGCCCGGGAGGGTACGTTGCCGCCATTAAAGCAGCTCAGCTCGGTCTCAAGACGGCCTGCATAGAGAAACGCGGCACTCTGGGAGGTACCTGTCTCAATGTGGGATGCATCCCCTCTAAGGCATTGCTTCATTCCTCGCACATGTTTCATGAAGCTAAGCATGCATTTGCTGGCCATGGTGTGAAAGTGGGACAAGTGGAAATTGATATCCCTGCAATGATGGCTCAGAAAGAAAAGTCTGTTACTGGTCTGACAAAAGGAATTGAAGGACTTTTTAAGAAGAATAAAGTCACTTATGTTAAAGGTGCTGGTAAGATTATATCTGGAAATGAGGTGTCAGTGGATCTTCCTGATGGTAGTAGCAGTATAGTTAAAGGAAAACATATCATCATAGCAACTGGTTCAGATGTGAAGCCCCTTCCTGGAATCACTATTGATGAAAAGAAGATTGTTTCATCCACAGGAGCACTATCATTGACTGAGGTTCCGAAGAAGCTTGTAGTTATTGGTGCAGGTTACATTGGCTTAGAAATGGGTTCAGTATGGGGAAGGCTGGGTTCAGAAGTCACTGTTGTTGAATTTGCTCCTGAGATAGTTCCTACCATGGATGCAGAGGTACGGAGAACTTTCCAAAGAACATTAGAAAAACAGAAAATGAAGTTCATGTTGAAAACTAAGGTGATTGGCGTTGATGCATCAGGAACAGGGGTAAAACTGACATTGGAACCGGCTGCAGGAGGTGAACAGACCACTCTTGAGGCTGATGTAGTTCTTGTTTCTGCTGGCAGATCACCTTATACCAAAGGTCTTGGACTGGAAGAGCTTGGAGTAAAACTGGATAGAATGGGACGTGTGGAAGTTGATGATCATTTCAGGACAAATATTCCTGGAATTTATGCTATTGGTGATGTGATTCCTGGTCCCATGCTTGCACACAAGGCTGAAGAAGATGGCTTTGCCTGTGCAGAGCTTATTGCAGGAAAACCTGGACATGTGGACTATGACACTGTACCTGGAATTGTTTATACACATCCAGAGGTAGCTTCAGTAGGAAAGACAGAGGAGCAGGTCAAGGCTCTGAATACCCCATACAAAGTTGGAAAGTTCCCCTTTATGGCAAACAGTAGGGCTAGAACTATTGATGATGCAGATGGTTTAGTGAAAATAATTGCAGAGAAAGAAACTGACAAGATCCTTGGCGTGCACATTATGGGTCCAAACGCTGGGGAGATGATTCATGAAGCTGTTATTGCTTTACAATATGGAGCATCTAGTGAAGATATTGCTAGAACCTGTCATGGACACCCAACACTCAGTGAAGCTGTTAAAGAAGCTGCCATGGCAACATTTGACAAGCCTATCCACATTTAG___TGTGGTGGATATTTTTTCTGGAACCAGTTATCATAGATTTATTTTTCATTTGGATATGTAATTTTCCTACTTAAAAATTGGACAGCATCCACAAGAAGTTTTCATGGGATGGTTTCACAATTCTGTTAGGAAATATGATTCATTTCATAGTTCTAAAACAGACTTTTGACAAGTATGAAGAAATGAGTTGTCATATGCAATTGAATAAAGACCATATTTCAAATTACATAAGAATTTGAAAATGCTGTAAACCTGTTGATTACTTTTTGAGATAAATTAACAGTGTGACAGTGATGTTTAATTCTTGAATCTTGATATACGTTGTGGATAACAACAAACATGTTCAGCCTATCTCTGCAGGTGATTGAAGCCTATTTTTTTGTGAATTCTAGTTTCAACTTATTGGG

Fln Alignment:

Contig3137___MAAMAGRWRGQLALIHKALRPTSSSEGLGRCVGALRTYSSSSAEENDXXXXXXXXXXXXAAIKAAQLGLKTACIEKRGTLGGTCLNVGCIPSKALLHSSHMFHEAKHAFAGHGVKVGQVEIDIPAMMAQKEKSVTGLTKGIEGLFKKNKVTYVKGAGKIISGNEVSVDLPDGSSSIVKGKHIIIATGSDVKPLPGITIDEKKIVSSTGALSLTEVPKKLVVIGAGYIGLEMGSVWGRLGSEVTVVEFAPEIVPTMDAEVRRTFQRTLEKQKMKFMLKTKVIGVDASGTGVKLTLEPAAGGEQTTLEADVVLVSAGRSPYTKXXXXXXXXVKLDRMGRVEVDDHFRTNIPGIYAIGDVIPGPMLAHKAEEDGFACAELIAGKPGHVDYDTVPGIVYTHPEVASVGKTEEQVKALNTPYKVGKFPFMANSRARTIDDADGLVKIIAEKETDKILGVHIMGPNAGEMIHEAVIALQYGASSEDIARTCHGHPTLSEAVKEAAMATFDKPIHI
B8LLJ4______________MAAMAGRWRGRLALIHKALKPTSSSEGLGRCVGALRTYSSSSAEENDVVVVGGGPGGYVAAIKAAQLGLKTICIEKRGSLGGTCLNVGCIPSKALLQSSHMFYEAKHAFAGHGVKVGQVEIDIPAMMAQKEKSVTGLTKGIEGLFKKNKVTYVKGAGKIISGNEVSVDLLDGNSSIVKGKHIIIATGSDVKPLPGITIDEKKIVSSTGALSLTEVPKKLVVIGAGYIGLEMGSVWGRLGSEVTVVEFASEIVPTMDGEVRKSFQRTLEKQKMKFMLKTKVIGVDASGTGVKLTLEPASGGEQTTLEADVVLVSAGRSPFTKGLGLEELGVKLDRMGRVEVDDHFRTNIPGIYAIGDVIPGPMLAHKAEEDGVACAELIAGKAGHVDYDTVPGIVYTHPEVASVGKTEEQVKALNIPYKVGKFPFMANSRARTIDDADGLVKIIAEKESDKILGVHIMGPNAGEIIHEAVIALQYGASSEDIARTCHGHPTLSEAVKEAAMATYDKPIHI

SNPs (tot: 25)

Position	A %	C %	G %	T %	Probability
334	25		75		0.996473
516			20	80	0.995493
1236	10		89		0.999919
1398	10			90	0.90298
1404			90	10	0.90298
1406		90		10	0.90298
1407	90			10	0.90298
1408	88		11		0.923564
1409	90		10		0.90298
1410			10	90	0.90298
1502	25			75	0.996473
1504			75	25	0.996473
1508	25		75		0.996473
1509	50	25			0.995533
1627			91	8	0.999766
2141	75	25			1.0
2149	75		25		1.0
2162		75		16	0.99999
2205	14			85	0.993533
2206	14			85	0.993533
2207	16		83		0.994512
2220		75	25		0.996473
2233	66		33		0.997452
2245		33	66		0.997452
2249		33		66	0.997452

SSRs (tot: 2)

Start position	End position	Sequence	Length
315	327	ACA ACA ACA ACA A	13
484	495	TCA TCA TCA TCA	12

Back

Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain