SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3122

Length: 2589 nt

UniGene Fasta

>sp_v3.0_unigene3122
ACAAAATTCCGCAGATCAATGCAAATCGCTGCATTCGATGGACTAAGTCGCACTCAGGCTTAACGTGTCCCGTAGGATGATATTATTTCAATACAGTAGCATGGTTGTAAAACCCCTCTGTGCACTTCACATTTTTATTCAATTTATCTCTGTGAAGCAGGTGCCGATGGTTTGAATGAAAGAAAGATCGACATCATTACATTTTTATTCAATTTATCTCTGTGAAGCAGGTGCTGATGGTTGAATGAAAGAAAGACAGACATCATTATTCTAAGTGTAAAAGGTTAAAGATAGCTTATAAAACAGATTGTTTCTTCATATATTCGACCTTTTTATAGCAATACCAATAACTATCTACCTTTTTATAGCAATATCAATAACGATCTATACTTAGATCACACTGAATACCCAAATTCTGAAGAATGGGAGAGAGAAGAATACTCGAGCGTATTGGGTCTATTTCACAGCATCTGAATCCCTCGAGGACCAACATTTCTTTTAATGCTTGTTTAGGAAATGGTGGAAAGCATTCAAGTTATGAGCGAGAGGGTCATACTGTGATTATAGGAGGTTTGGTTTTGGATATTCATGCTAAGGCTGCAAAAAATATCCGTGCAGGTACTACCACTCCTGGTCAGGTCACATATTTAAGCGGGGGAGTATCCAGAAATGTCGCTGAGTGTATGCAAAGACTCGGAGTTAAGCCCTTTATCATCAGTGTCGTTGGAGAAGACATGGCAGGAAAAACATTGCTTGACAACTGTAAGTCCCTTGGTTTGTCCATAGATGGAATCCGCAAGTGTAAGAATGTAGCAACCCCTGTTGTATCAAACATATATGACAGTGCAGGAGAAATAGCATCCGCTGTTGCAGACGTGCAGGCAGTTGAAGAATCCTTGACAGCAGAATGGATAAATCAATTTAGGAGCTATTTTGGCTCTGCACCTTTGTTGATGATTGATGCAAATTTACATCCTCTGGCCCTTGAGGCAGCTTGCAATTTGGCCAAGGAATCAAATACACCAGTTTGGTTTGAGCCTGTATCATTTGCCAAATCAGCTAGAGTCAGAAGTATTGTAAAATATGTCACTTTTGTTTCACCTAATGAGTCTGAACTTATTGCTATGGCAGAGTCAATATCTTCTTTAAATTTGTCTCAGTCTCTTCAAATCCTGGAGAATGATGGCAAGAAACTGAATGTTGAAGCAATCTATGAAATTTTCAAACCAGCCATCAGTATATTGCTAGATGAGGGTGTTAAGTTTATTGTTTTGACACTTGGATCCTCTGGTGTGTTTCTGTGTTTTAAAGAGGTATCTAGTTTAACAGTGGTTCCTATAAATGGTTCTAAAGGCAATCAGTTTGAAAAGGGTCGAACAGGCAGTGGGCAACTGGCTCTGTCAACTGTTGAGAAGCCAAAGTTCTCAAATAATTACCATGCCAGATACCAGGAATCTGGGAAGAAAATTCTCCACTTCAATTGCTTACATTTTCCAGCTTTGCCTGCATCAATTTTATGCCTAACAGGTGCAGGTGATTGCTTTGTGGGTGGTACCCTTGCAGCTCTTTGTGTTGGAAAGGACATAATAGAAAGTATGGCTTTTGGTGTGGCGGTAGCAAAGCGGGCAGTTGAATCTGAACTGAATGTACCTTCTCATTTATCTCTAACAATGGTTTCAGATGATGCGAAGACTGTCCTATCCCTGATGAGAACAATCGATTCATCATTTCACTAGGAGGTGTGATTTTCTGTTTTAGATGTGTTTTAGACATATTGGGGTTATGATTCCATAAATATATTGGTACATATTAATTTTAAATGAATTCAGGCTCCTGATATGGTAGCAGAGTGCTCAAGTTTTCTTATTGTCCCAATGAAAGCATGGTGAAAGCATGCCAAAACTCAAATTCAATTGAGACTTGGGTTTGCTTCTTGTCTGATGCAGACAATGATCATTTGGCCAATAGTTGGTTGTTGATAGCTTATTATTGTGGATGGTTTTCATTGGACTGGAAATAATACAACTTGTGTGCTTGGCAGCCTAGAAAGAACATCAAATAACTCATCGACAAGCCCTAACTCTCAACTCTACTATCATCTATAATGGGATGTGTCTGATGTCTCACAAGTCGGCACAGTAAGAGGAATTTTGTGATGAACATGGATGATAACAGTGTGATGCATACCTCAATTTTCACTCCATTTAGTTATCAGAAGTTCAATTCTAATCCATAAAAGCAACTGAAGCTGGTCCTGCAGAAATTTTGAAAGATCCTTTCTTTGCTAAATTCTCGGCAAAAAAATTAACTGGACATATTTACCATTTAGAAAGATTGTTGTAAGATATTTGATATTACAAAAAGTAAATATTTTCTGATGCTGGGTAGTAACATTTCTTATTTCTAGTTAAAATTTCTCACCAGTGGAGAGCTTTCCTGAGGTAAGCCATGGCCGGTACTCTCTGGAAGAAGGGACCAGAAAGACAATTTAATTAAAAACTTCCTGGCAAAATAATGAGTGGTTCTAAATGTATCTTACCATATATATATATATATGGACAGATAAAAAAGGGCTTATTCTCTGTTCTC

Ace file of the UniGene sp_v3.0_unigene3122

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Carbohydrate kinase, PfkB [Medicago truncatula]	-	-	0.0	48%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	48%

Source	Gene names
Sma3	At1g49350; GSVIVT00035982001; MtrDRAFT_AC147481g10v2; OJ1111_A10.13; Os05g0185700; OsI_18736; OsJ_17378; PHYPADRAFT_214732; POPTRDRAFT_195342; POPTRDRAFT_195347; RCOM_0937540; VITISV_035585;

Source	GOs	Term	Type	Identity
Sma3	ribokinase activity	GO:0004747	Molecular Function	-
Sma3	D-ribose metabolic process	GO:0006014	Biological Process	-
Sma3	rRNA processing	GO:0006364	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Ribosome-binding factor A	IPR000238	-	-
Sma3	Ribokinase	IPR002139	-	-
Sma3	Carbohydrate/puine kinase, PfkB, conserved site	IPR002173	-	-
Sma3	MaoC-like dehydratase	IPR002539	-	-
Sma3	Pentatricopeptide repeat	IPR002885	-	-
Sma3	TB2/DP1/HVA22-related protein	IPR004345	-	-
Sma3	Carbohydrate/purine kinase	IPR011611	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G49350.1	pfkB-like carbohydrate kinase family protein chr1:18265070-18267034 FORWARD LENGTH=378	45%
RefSeq	Arabidopsis thaliana	NP_564543.1	pfkB-type carbohydrate kinase-like protein [Arabidopsis thaliana]	45%
RefSeq	Populus trichocarpa	XP_002306090.1	predicted protein, partial [Populus trichocarpa]	48%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D7U5F3

Fln msg:

Fln protein: MGERRILERIGSISQHLNPSRTNISFNACLGNGGKHSSYEREGHTVIIGGLVLDIHAKAAKNIRAGTTTPGQVTYLSGGVSRNVAECMQRLGVKPFIISVVGEDMAGKTLLDNCKSLGLSIDGIRKCKNVATPVVSNIYDSAGEIASAVADVQAVEESLTAEWINQFRSYFGSAPLLMIDANLHPLALEAACNLAKESNTPVWFEPVSFAKSARVRSIVKYVTFVSPNESELIAMAESISSLNLSQSLQILENDGKKLNVEAIYEIFKPAISILLDEGVKFIVLTLGSSGVFLCFKEVSSLTVVPINGSKGNQFEKGRTGSGQLALSTVEKPKFSNNYHARYQESGKKILHFNCLHFPALPASILCLTGAGDCFVGGTLAALCVGKDIIESMAFGVAVAKRAVESELNVPSHLSLTMVSDDAKTVLSLMRTIDSSFH*

Protein Length: 439

Fln nts: ACAAAATTCCGCAGATCAATGCAAATCGCTGCATTCGATGGACTAAGTCGCACTCAGGCTTAACGTGTCCCGTAGGATGATATTATTTCAATACAGTAGCATGGTTGTAAAACCCCTCTGTGCACTTCACATTTTTATTCAATTTATCTCTGTGAAGCAGGTGCCGATGGTTTGAATGAAAGAAAGATCGACATCATTACATTTTTATTCAATTTATCTCTGTGAAGCAGGTGCTGATGGTTGAATGAAAGAAAGACAGACATCATTATTCTAAGTGTAAAAGGTTAAAGATAGCTTATAAAACAGATTGTTTCTTCATATATTCGACCTTTTTATAGCAATACCAATAACTATCTACCTTTTTATAGCAATATCAATAACGATCTATACTTAGATCACACTGAATACCCAAATTCTGAAGA_-_ATGGGAGAGAGAAGAATACTCGAGCGTATTGGGTCTATTTCACAGCATCTGAATCCCTCGAGGACCAACATTTCTTTTAATGCTTGTTTAGGAAATGGTGGAAAGCATTCAAGTTATGAGCGAGAGGGTCATACTGTGATTATAGGAGGTTTGGTTTTGGATATTCATGCTAAGGCTGCAAAAAATATCCGTGCAGGTACTACCACTCCTGGTCAGGTCACATATTTAAGCGGGGGAGTATCCAGAAATGTCGCTGAGTGTATGCAAAGACTCGGAGTTAAGCCCTTTATCATCAGTGTCGTTGGAGAAGACATGGCAGGAAAAACATTGCTTGACAACTGTAAGTCCCTTGGTTTGTCCATAGATGGAATCCGCAAGTGTAAGAATGTAGCAACCCCTGTTGTATCAAACATATATGACAGTGCAGGAGAAATAGCATCCGCTGTTGCAGACGTGCAGGCAGTTGAAGAATCCTTGACAGCAGAATGGATAAATCAATTTAGGAGCTATTTTGGCTCTGCACCTTTGTTGATGATTGATGCAAATTTACATCCTCTGGCCCTTGAGGCAGCTTGCAATTTGGCCAAGGAATCAAATACACCAGTTTGGTTTGAGCCTGTATCATTTGCCAAATCAGCTAGAGTCAGAAGTATTGTAAAATATGTCACTTTTGTTTCACCTAATGAGTCTGAACTTATTGCTATGGCAGAGTCAATATCTTCTTTAAATTTGTCTCAGTCTCTTCAAATCCTGGAGAATGATGGCAAGAAACTGAATGTTGAAGCAATCTATGAAATTTTCAAACCAGCCATCAGTATATTGCTAGATGAGGGTGTTAAGTTTATTGTTTTGACACTTGGATCCTCTGGTGTGTTTCTGTGTTTTAAAGAGGTATCTAGTTTAACAGTGGTTCCTATAAATGGTTCTAAAGGCAATCAGTTTGAAAAGGGTCGAACAGGCAGTGGGCAACTGGCTCTGTCAACTGTTGAGAAGCCAAAGTTCTCAAATAATTACCATGCCAGATACCAGGAATCTGGGAAGAAAATTCTCCACTTCAATTGCTTACATTTTCCAGCTTTGCCTGCATCAATTTTATGCCTAACAGGTGCAGGTGATTGCTTTGTGGGTGGTACCCTTGCAGCTCTTTGTGTTGGAAAGGACATAATAGAAAGTATGGCTTTTGGTGTGGCGGTAGCAAAGCGGGCAGTTGAATCTGAACTGAATGTACCTTCTCATTTATCTCTAACAATGGTTTCAGATGATGCGAAGACTGTCCTATCCCTGATGAGAACAATCGATTCATCATTTCACTAG___GAGGTGTGATTTTCTGTTTTAGATGTGTTTTAGACATATTGGGGTTATGATTCCATAAATATATTGGTACATATTAATTTTAAATGAATTCAGGCTCCTGATATGGTAGCAGAGTGCTCAAGTTTTCTTATTGTCCCAATGAAAGCATGGTGAAAGCATGCCAAAACTCAAATTCAATTGAGACTTGGGTTTGCTTCTTGTCTGATGCAGACAATGATCATTTGGCCAATAGTTGGTTGTTGATAGCTTATTATTGTGGATGGTTTTCATTGGACTGGAAATAATACAACTTGTGTGCTTGGCAGCCTAGAAAGAACATCAAATAACTCATCGACAAGCCCTAACTCTCAACTCTACTATCATCTATAATGGGATGTGTCTGATGTCTCACAAGTCGGCACAGTAAGAGGAATTTTGTGATGAACATGGATGATAACAGTGTGATGCATACCTCAATTTTCACTCCATTTAGTTATCAGAAGTTCAATTCTAATCCATAAAAGCAACTGAAGCTGGTCCTGCAGAAATTTTGAAAGATCCTTTCTTTGCTAAATTCTCGGCAAAAAAATTAACTGGACATATTTACCATTTAGAAAGATTGTTGTAAGATATTTGATATTACAAAAAGTAAATATTTTCTGATGCTGGGTAGTAACATTTCTTATTTCTAGTTAAAATTTCTCACCAGTGGAGAGCTTTCCTGAGGTAAGCCATGGCCGGTACTCTCTGGAAGAAGGGACCAGAAAGACAATTTAATTAAAAACTTCCTGGCAAAATAATGAGTGGTTCTAAATGTATCTTACCATATATATATATATATGGACAGATAAAAAAGGGCTTATTCTCTGTTCTC

Fln Alignment:

Contig3122___RIGSISQH-LNPSRTNISFNACLGNGGKHSSYEREGHTVIIGGLVLDIHAKAAKNIRAGTTTPGQVTYLSGGVSRNVAECMQRLGVKPFIISVVGEDMAGKTLLDNCKSLGLSIDGIRKCKNVATPVVSNIYDSAGEIASAVADVQAVEESLTAEWINQFRSYFGSAPLLMIDANLHPLALEAACNLAKESNTPVWFEPVSFAKSARVRSIVKYVTFVSPNESELIAMAXXXXXXXXXXXXXXXXXDGKKLNVEAIYEIFKPAISILLDEGVKFIVLTLGSSGVFLCFKEVSSLTVVPINGSKGNQFEKGRTGSGQLALSTVEKPKFSNNYHARYQESGKKILHFNCLHFPALPASILCLTGAGDCFVGGTLAALCVGKDIIESMAFGVAVAKRAVESELNVPSHLSLTMVSDDAKTVLSLMRTI
D7U5F3______________RLDSLSRHFLQPHQANRSLFPNLLRGVHVKDVEAD--PVLIGGMVLDIQATPSISAKPKTTTPGKVHYVPGGVARNIAECMSKLGTKPYMISALGLDMAGNMLLEHWKSARLSMEGIRKHHDIQTSVVCHIFDGDGELAAGVASVEAIENFLTSDWIRQFKCNICSAPVLMVDANLSPSALEASCQMAAESSTPVWFEPVSVIKSRRVASVAKYITFASPNEDELIAMANALSCKDVFHPIQRDYV-GTKCSIESLFQMLKPAILVLLEKGIKVVVLTLGSDGVFLCSKEGPGFMNNVLKGTKPQGF-----GSQLYEIITESCP---SNLFLNIATSSSKTYPF-AVHLPALPASVARLTGAGDCLVGGTLASMCAGLDVLQSVAAGIAAAKAAVEGETNVPSEYSLAKIADDARRVCSSAKVI

SSRs (tot: 1)

Start position	End position	Sequence	Length
2541	2556	AT AT AT AT AT AT AT AT	16

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain