SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3121

Length: 3756 nt

UniGene Fasta

>sp_v3.0_unigene3121
ACCACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGAGAAGAAGCAGAAGCAGCTTTTGCTGCTATGCTCGTTCTTCTTCGCTTAACAGCAGCGATAGAAACCGTGCAAGAATCGGAGGGCAGGGCATGGTAGGAGCGGAGATAGGGGAGAAGAAGAACCAACAGCCTTGGAAATGACATGCCAACGGCCATTTCGTCGCAAGGGCCCGCCCGTAGGGTTCAGAAATCTCGGGAATACGTGCTATCTTAACAGCGTGCTTCAGTGTCTCACTTACACGCCTCCTCTGGCGAATTTTTGCCTTCGAAATCTGCATTCTTCTGTATGCAAATCTTGGGACGGCCACTGCCCCTTTTGCTTGGTGGAGAAGCGCATCTTGAGGTCTCTAAACAGTGACATTCCGCATGATGCTCCTGTGAATATCCAGAGGTCTTTAGAACTCTTTGCGAAGCATTTCAGGTCTGGAAGGCAAGAAGATGCTCATGAATTTCTCCGTTACTTGATTGAGGCTTGCAATGACGTTTGTGTTAAGCTTTACAAGGCACGGAACAGTCAAGGTGGTAAGGCATCAAAGGGTGAGCCTGATACCATTGTTAAAGATATTTTCGGCGGTGTGTTGCAAAGCCAAGTCAAGTGCCTTTCCTGCGAAGCAGAGTCGAACAAGATGGATGAGATTATGGATATCAGCCTTGATATATTGCAGGCAAGCTCGTTGAAAGAAGCCTTTTCTCGTTATTTTCAGTCGGAGCTGCTCGATGGAAACAACAAGTACCGCTGTGAAAAGTGCAAGAAGTTGTCCACAGCACGCAAGCAAATGTCAATCTTTCAAGCTCCTAATGTTCTAGTCATTCAGCTGAAGAGATTTGAGGACATATATGGTGGCAAAATAGATCGCAGCATTATTTTTGAGGAGCGCTTAGCACTTTCTGGCCATATGTGCAGAGACAGTCAGGATGTGCGGCCAGAGTATACTCTCTTTGGTACCATTGTCCATTCAGGCTACTCACAGGACTCTGGTCATTATTACGCATATGTGAAGGATGCAAATTCTCACTGGTATTGCTGTAATGATGCCCATGTTTCTTCAGCCACTTTACAGACAGTCTTATCTGAGAAAGTATACATGCTGTTCTATCTTCGGAGCAGTCCAAAATTAAAAGGAGTTAAAGATATTCCTTCTTCCAATGGGGTGATACCTGCCAAAGAAAATGGCAATGATATGAATATTTCCTCAAATGGAAGGTCGTCTGCATCATCAAATTCATCTGTTGGCATATCTTCGTCTGGAGGGATTGTGACTAGTGGTTTGTCTAAAGTGCATCCAAAACCACAGATTAAGTTTGCAAACCTGAAGCATTCTGGTCCTCAAGTTGGGAGGGTTGGTGCTGTTGCAAATGGTAATGGCATGTCTAAGCCTCCTGTTATTACAAGGCAGGAAAAATATGAGAGTTCTGGAAAAAGGATATCTGAGAGGAGCAACCAAGATGCTTCTTGTTCTGGTAACTCCAGTAATGTTAAGAAAGATGAAACATTGGTTCAAACACAACATTCTGAATCCAATTATGAGTCTGACAGTGGAAGATCACGCTCTGATTGCCATATTGGGAAAACAGATGGTGAAAGTTGTGTTACTGGAAGTAAGGATGGCAATTTATTGGCTGGAGATCGTCTTGTTGTTGAGAAGAAGTCAGGAAGCAATGACTATCATCCTACAGACAGATTGGTAAAGACTGCAAATGGTACATCTTGCTATAGTCAAGCTGAATCTAATAGCCTCAATGTTAAATGCAACACACAAAAAGATAATGGAAGGTCACTGTCTAATGGAAATGAAAACTCTTCAGAAGAAAAGATGCACTTCAAGAGACGACGAGACGAATATGAAAATTCACACACAGGGATTAGCCACATTGATCATGAAAACGGTGCATTAGAGCACAATGTTGAATCCAGAAGGAATGCTGAAGCCAATGGTGAAGACAAACTATCCGATTTTGATAAGTTCAAACAAATGCTTTTTCAGGAAGCACGTCAATATTTACAATCATGTGGCTGGTGTGATGATGTACGAGAGACCATGCGAGAGAGAAAGAGGATTCATTTAGATAATATGTGTTTATCAAGCAATGATATTAACTCAAGGAAGTTGTTAATACATGATATCAAGGATTCTTTTAATCGGCAAGTTCCTGAGTCACTAAAGGAACAATTTATAAGTCGGCTTGGCTCCTTCTTTAGAGGAAAGCAATGACTGGGGTGCTTGGGGCCATTTATGCATATGGTATGCCTGGGAATTACTGTAATCCTGATCTCTTTAGAAAGTTAATACTTTGCTGCAAGGATGCAATGATTCTGGTTATGTTCGACTCTCAGATAAATTGCCTTGTAATTTGCATCCAGTTTTGCTGCTGCTGCGCCGGATGAGTTGTATAGTATATATGTAATAAATGCCTGCTGATCTCAGTCTAAGGAAATGAGGGTATGGATGCCATTATGCTTTGTTTATGTTCCCAGAATAAATTTCTGTTGTGAATCTGCTGTCCGTCAGGATTTTATGGGTATTATGAGGAATGCCTATTCTTCAATTAAGACACCCACAAACAATAGTTGTGTCCATTTCTTTTCAGGTGTAGATGCAGAAGGTGGGCATGCGATAAAGCAATAAAAAATGTCCTTGAAGGCTGCAACAGTTTTTGGGTGTATGTTAATTCGACACTTAAGGCAATTTTCAAAGTACGTGCTGTTTTTGTTTCAAGGAGAGCACATGTTCATATACACTTTCTCAGAATGATGGAGGACATAACTTTATTCTATGAAGAGATCATGTAGCCATTCAGGCCTTTGCACTTCTCTGGTCATTTGCAGGCTTAGTGAGAATGAGTCTCCTATATATACTTCTATATTCTTTTACTTGAGTGTATGATATTTTTTTGCCTGCTATTTCCAATTCAAAAATTTCGAGGGGATGCATACTACCACACTTCAACAATTTTTTCCAGCTGTGTGGGGTGTTGATCCTATATTACACGAAGAATGTTAACAATTATACCTTCTTTGTGGAAAATACAAAGTATTGATGTTACTAGTCAAGCTATCTTGGTTTATTACATTAGTATATGCAGTTGCCTGTTGGGCATTGTCAGCGGACATGGCTGATTTAAATTTAGCCCTAATGGTAACTTCCTTTGACCTCTTTCAGAATAAAGGACCGTTCATATGATTGGAACGATGGAATGCACTGTTATGCAATGGATAACTGGTCGTTACAACTGTTAAAAGGGTGATGTCAACGAGTTGTCATAAAAATCTTGTGGTGAACTATATTTGATGTTTTCTGATTTTTAATTCTGGCTTAGGTTGCAAAGGATCTCTTGCAATGAAGGCTTCAACTGGATTGGGATTTGAATTCGAAGATTACAAAGAGCTTTGAGGAAGTGCTGGAAGGGCGAGGACAGTCGACATATTTGATTGGCATCTGATTTATCAAAGAAACAGGTGTAAATCTACTTTTTGCTTCTATAAATTTTGTACCCATCTCCATTCCATGTTGATCGTGTAGTTCTTGCAGGGACGATTGCTGTGCTTTAAAAAAATATGCATCAGTCAGTAGATTTTCCACATTGAAGTTGGATAATAGGTGAAATGTATACATAAAACCTAGGTTGAAAATATATTTTGAGTTGAACCAAAAATGTCTCAAAGAAGATTTTCGTGTCAACTGGTCACGTAGAGGATGATTGTGTCTCACTATC

Ace file of the UniGene sp_v3.0_unigene3121

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Ubiquitin carboxyl-terminal hydrolase (Fragment) n=2 Tax=Vitis vinifera RepID=D7TR00_VITVI	-	-	0.0	62%
FL-Next	sp=Ubiquitin carboxyl-terminal hydrolase 25; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	63%

Source	ECs	Term	Type	e value	Identity
Sma3	Ubiquitin thiolesterase.	EC:3.1.2.15	-	6.528e-08	-

Source	Gene names
Sma3	At3g14400; GSVIVT00000990001; MLN21.18; OJ1666_A04.24; Os08g0478500; OsI_29613; OsJ_27681; PHYPADRAFT_32265; PHYPADRAFT_32478; POPTRDRAFT_209220; POPTRDRAFT_568834; POPTRDRAFT_785393; RCOM_1716540; UBP25;

Source	GOs	Term	Type	Identity
Sma3	ubiquitin thiolesterase activity	GO:0004221	Molecular Function	-
Sma3	peptidase activity	GO:0008233	Molecular Function	-
Sma3	cysteine-type peptidase activity	GO:0008234	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	ubiquitin-dependent protein catabolic process	GO:0006511	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2	IPR001394	-	-
Sma3	Zinc finger, MYND-type	IPR002893	-	-
Sma3	Peptidase C19, ubiquitin carboxyl-terminal hydrolase 2, conserved site	IPR018200	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G14400.1	UBP25 ubiquitin-specific protease 25 chr3:4811953-4815210 REVERSE LENGTH=661	63%
RefSeq	Arabidopsis thaliana	NP_566486.1	ubiquitin carboxyl-terminal hydrolase 25 [Arabidopsis thaliana]	63%
RefSeq	Populus trichocarpa	XP_002316872.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: Q9FPS2

Fln msg: your sequence is longer than subject: 692 - 661

Fln protein: MTCQRPFRRKGPPVGFRNLGNTCYLNSVLQCLTYTPPLANFCLRNLHSSVCKSWDGHCPFCLVEKRILRSLNSDIPHDAPVNIQRSLELFAKHFRSGRQEDAHEFLRYLIEACNDVCVKLYKARNSQGGKASKGEPDTIVKDIFGGVLQSQVKCLSCEAESNKMDEIMDISLDILQASSLKEAFSRYFQSELLDGNNKYRCEKCKKLSTARKQMSIFQAPNVLVIQLKRFEDIYGGKIDRSIIFEERLALSGHMCRDSQDVRPEYTLFGTIVHSGYSQDSGHYYAYVKDANSHWYCCNDAHVSSATLQTVLSEKVYMLFYLRSSPKLKGVKDIPSSNGVIPAKENGNDMNISSNGRSSASSNSSVGISSSGGIVTSGLSKVHPKPQIKFANLKHSGPQVGRVGAVANGNGMSKPPVITRQEKYESSGKRISERSNQDASCSGNSSNVKKDETLVQTQHSESNYESDSGRSRSDCHIGKTDGESCVTGSKDGNLLAGDRLVVEKKSGSNDYHPTDRLVKTANGTSCYSQAESNSLNVKCNTQKDNGRSLSNGNENSSEEKMHFKRRRDEYENSHTGISHIDHENGALEHNVESRRNAEANGEDKLSDFDKFKQMLFQEARQYLQSCGWCDDVRETMRERKRIHLDNMCLSSNDINSRKLLIHDIKDSFNRQVPESLKEQFISRLGSFFRGKQ*

Protein Length: 693

Fln nts: ACCACTGCTTAAGCAGTGGTATCAACGCAGAGTACGCGGGGGAGAAGAAGCAGAAGCAGCTTTTGCTGCTATGCTCGTTCTTCTTCGCTTAACAGCAGCGATAGAAACCGTGCAAGAATCGGAGGGCAGGGCATGGTAGGAGCGGAGATAGGGGAGAAGAAGAACCAACAGCCTTGGAA_-_ATGACATGCCAACGGCCATTTCGTCGCAAGGGCCCGCCCGTAGGGTTCAGAAATCTCGGGAATACGTGCTATCTTAACAGCGTGCTTCAGTGTCTCACTTACACGCCTCCTCTGGCGAATTTTTGCCTTCGAAATCTGCATTCTTCTGTATGCAAATCTTGGGACGGCCACTGCCCCTTTTGCTTGGTGGAGAAGCGCATCTTGAGGTCTCTAAACAGTGACATTCCGCATGATGCTCCTGTGAATATCCAGAGGTCTTTAGAACTCTTTGCGAAGCATTTCAGGTCTGGAAGGCAAGAAGATGCTCATGAATTTCTCCGTTACTTGATTGAGGCTTGCAATGACGTTTGTGTTAAGCTTTACAAGGCACGGAACAGTCAAGGTGGTAAGGCATCAAAGGGTGAGCCTGATACCATTGTTAAAGATATTTTCGGCGGTGTGTTGCAAAGCCAAGTCAAGTGCCTTTCCTGCGAAGCAGAGTCGAACAAGATGGATGAGATTATGGATATCAGCCTTGATATATTGCAGGCAAGCTCGTTGAAAGAAGCCTTTTCTCGTTATTTTCAGTCGGAGCTGCTCGATGGAAACAACAAGTACCGCTGTGAAAAGTGCAAGAAGTTGTCCACAGCACGCAAGCAAATGTCAATCTTTCAAGCTCCTAATGTTCTAGTCATTCAGCTGAAGAGATTTGAGGACATATATGGTGGCAAAATAGATCGCAGCATTATTTTTGAGGAGCGCTTAGCACTTTCTGGCCATATGTGCAGAGACAGTCAGGATGTGCGGCCAGAGTATACTCTCTTTGGTACCATTGTCCATTCAGGCTACTCACAGGACTCTGGTCATTATTACGCATATGTGAAGGATGCAAATTCTCACTGGTATTGCTGTAATGATGCCCATGTTTCTTCAGCCACTTTACAGACAGTCTTATCTGAGAAAGTATACATGCTGTTCTATCTTCGGAGCAGTCCAAAATTAAAAGGAGTTAAAGATATTCCTTCTTCCAATGGGGTGATACCTGCCAAAGAAAATGGCAATGATATGAATATTTCCTCAAATGGAAGGTCGTCTGCATCATCAAATTCATCTGTTGGCATATCTTCGTCTGGAGGGATTGTGACTAGTGGTTTGTCTAAAGTGCATCCAAAACCACAGATTAAGTTTGCAAACCTGAAGCATTCTGGTCCTCAAGTTGGGAGGGTTGGTGCTGTTGCAAATGGTAATGGCATGTCTAAGCCTCCTGTTATTACAAGGCAGGAAAAATATGAGAGTTCTGGAAAAAGGATATCTGAGAGGAGCAACCAAGATGCTTCTTGTTCTGGTAACTCCAGTAATGTTAAGAAAGATGAAACATTGGTTCAAACACAACATTCTGAATCCAATTATGAGTCTGACAGTGGAAGATCACGCTCTGATTGCCATATTGGGAAAACAGATGGTGAAAGTTGTGTTACTGGAAGTAAGGATGGCAATTTATTGGCTGGAGATCGTCTTGTTGTTGAGAAGAAGTCAGGAAGCAATGACTATCATCCTACAGACAGATTGGTAAAGACTGCAAATGGTACATCTTGCTATAGTCAAGCTGAATCTAATAGCCTCAATGTTAAATGCAACACACAAAAAGATAATGGAAGGTCACTGTCTAATGGAAATGAAAACTCTTCAGAAGAAAAGATGCACTTCAAGAGACGACGAGACGAATATGAAAATTCACACACAGGGATTAGCCACATTGATCATGAAAACGGTGCATTAGAGCACAATGTTGAATCCAGAAGGAATGCTGAAGCCAATGGTGAAGACAAACTATCCGATTTTGATAAGTTCAAACAAATGCTTTTTCAGGAAGCACGTCAATATTTACAATCATGTGGCTGGTGTGATGATGTACGAGAGACCATGCGAGAGAGAAAGAGGATTCATTTAGATAATATGTGTTTATCAAGCAATGATATTAACTCAAGGAAGTTGTTAATACATGATATCAAGGATTCTTTTAATCGGCAAGTTCCTGAGTCACTAAAGGAACAATTTATAAGTCGGCTTGGCTCCTTCTTTAGAGGAAAGCAATGA___CTGGGGTGCTTGGGGCCATTTATGCATATGGTATGCCTGGGAATTACTGTAATCCTGATCTCTTTAGAAAGTTAATACTTTGCTGCAAGGATGCAATGATTCTGGTTATGTTCGACTCTCAGATAAATTGCCTTGTAATTTGCATCCAGTTTTGCTGCTGCTGCGCCGGATGAGTTGTATAGTATATATGTAATAAATGCCTGCTGATCTCAGTCTAAGGAAATGAGGGTATGGATGCCATTATGCTTTGTTTATGTTCCCAGAATAAATTTCTGTTGTGAATCTGCTGTCCGTCAGGATTTTATGGGTATTATGAGGAATGCCTATTCTTCAATTAAGACACCCACAAACAATAGTTGTGTCCATTTCTTTTCAGGTGTAGATGCAGAAGGTGGGCATGCGATAAAGCAATAAAAAATGTCCTTGAAGGCTGCAACAGTTTTTGGGTGTATGTTAATTCGACACTTAAGGCAATTTTCAAAGTACGTGCTGTTTTTGTTTCAAGGAGAGCACATGTTCATATACACTTTCTCAGAATGATGGAGGACATAACTTTATTCTATGAAGAGATCATGTAGCCATTCAGGCCTTTGCACTTCTCTGGTCATTTGCAGGCTTAGTGAGAATGAGTCTCCTATATATACTTCTATATTCTTTTACTTGAGTGTATGATATTTTTTTGCCTGCTATTTCCAATTCAAAAATTTCGAGGGGATGCATACTACCACACTTCAACAATTTTTTCCAGCTGTGTGGGGTGTTGATCCTATATTACACGAAGAATGTTAACAATTATACCTTCTTTGTGGAAAATACAAAGTATTGATGTTACTAGTCAAGCTATCTTGGTTTATTACATTAGTATATGCAGTTGCCTGTTGGGCATTGTCAGCGGACATGGCTGATTTAAATTTAGCCCTAATGGTAACTTCCTTTGACCTCTTTCAGAATAAAGGACCGTTCATATGATTGGAACGATGGAATGCACTGTTATGCAATGGATAACTGGTCGTTACAACTGTTAAAAGGGTGATGTCAACGAGTTGTCATAAAAATCTTGTGGTGAACTATATTTGATGTTTTCTGATTTTTAATTCTGGCTTAGGTTGCAAAGGATCTCTTGCAATGAAGGCTTCAACTGGATTGGGATTTGAATTCGAAGATTACAAAGAGCTTTGAGGAAGTGCTGGAAGGGCGAGGACAGTCGACATATTTGATTGGCATCTGATTTATCAAAGAAACAGGTGTAAATCTACTTTTTGCTTCTATAAATTTTGTACCCATCTCCATTCCATGTTGATCGTGTAGTTCTTGCAGGGACGATTGCTGTGCTTTAAAAAAATATGCATCAGTCAGTAGATTTTCCACATTGAAGTTGGATAATAGGTGAAATGTATACATAAAACCTAGGTTGAAAATATATTTTGAGTTGAACCAAAAATGTCTCAAAGAAGATTTTCGTGTCAACTGGTCACGTAGAGGATGATTGTGTCTCACTATC

Fln Alignment:

Contig3121___RRKGPPVGFRNLGNTCYLNSVLQCLTYTPPLANFCLRNLHSSVCKSW-DGH----CPFCLVEKRILRSLNSDIPHDAPVNIQRSLELFAKHFRSGRQEDAHEFLRYLIEACNDVCVKLYKARNSQGGKASKGEPDTIVKDIFGGVLQSQVKCLSCEAESNKMDEIMDISLDILQASSLKEAFSRYFQSELLDGNNKYRCEKCKKLSTARKQMSIFQAPNVLVIQLKRFEDIYGGKIDRSIIFEERLALSGHMCRDSQDVRPEYTLFGTIVHSGYSQDSGHYYAYVKDANSHWYCCNDAHVSSATLQTVLSEKVYMLFYLRSSPKLKGVKDIPSSNGVIPAKENG
Q9FPS2______________RRNGPPLGLRNLGNTCYLNSVLQCLTFTPPLANFCLTHKHSSHCDTYVDGERKRDCPFCIVEKRIARSLSVDLTTDAPNKISSCLKIFAEHFKLGRQEDAHEFLRYVIDACHNTSLRLKKLRYN-GNEPFNG--NSVVKEIFGGALQSQVKCLSCGAESNKADEIMDISLEILQSSSVKESLQKFFQSEILDGNNKYRCESCEKLVTARKQMSILQAPNILVIQLKRFGGIFGGKIDKAISFGEILVLSNFMSKASKDPQPEYKLFGIIVHSGFSPESGHYYAYVKDSLGRWYCCNDSFVSLSTLQEVLSEKAYILFFSRSNQRPASAKTLVTSNGTTSHEVNG

SNPs (tot: 49)

Position	A %	C %	G %	T %	Probability
1095		66		33	0.997452
1227	80		20		0.995493
1228			20	80	0.995493
1260	10		90		0.90298
1264		90		10	0.90298
1467	85	14			0.993533
1469	85			14	0.993533
1470	85			14	0.993533
1480	83		16		0.994512
2334		11		88	0.923564
2336	88	11			0.923564
2339	22	11			0.999999
2340		88		11	0.923564
2375		22		77	0.999999
2429		85	14		0.993533
2611		80	20		0.995493
2612	80			20	0.995493
2615	80			20	0.995493
2616	20		80		0.995493
2620	80	20			0.995493
2622	80			20	0.995493
2625			20	80	0.995493
2626		20	80		0.995493
2631	20	80			0.995493
2632	80	20			0.995493
2634		20		80	0.995493
2635	20			80	0.995493
2713		14	85		0.993533
2719		14		85	0.993533
2720		14	85		0.993533
2723	85		14		0.993533
2724	75	12	12		0.975346
2725		12	12	75	0.975346
2729	75			25	1.0
2730		87	12		0.992554
2735	75	25			1.0
2736	87			12	0.992554
2738			87	12	0.992554
2741	87	12			0.992554
2743	14			85	0.993533
2746		87		12	0.992554
2748	87	12			0.992554
2752	87		12		0.992554
2753		87	12		0.992554
2759			87	12	0.992554
2760			12	87	0.992554
2831			88	11	0.923564
2864	11			88	0.923564
2865	11			88	0.923564

SSRs (tot: 1)

Start position	End position	Sequence	Length
2408	2419	TGC TGC TGC TGC	12

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain