SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3120

Length: 2229 nt

UniGene Fasta

>sp_v3.0_unigene3120
CAGAGTTAGAAATATCCGAAAGATCCTTAAAGAATAATCGGTTTTGGTATTTTCAGTCAGTCACCATGTGCGGAATTCTGGCTGTGTTCGGTTGCTTGGACGCATCGCAGGCCAAGCGCGCACGGGTTCTGGAGCTCTCGCGAAGGCTACGGCATAGAGGCCCTGATTGGAGCGGGCTGTATCAGAGCGGGCATTCCTTTCTTGCTCACCAGAGGTTGGCCATCGTAGATCCTGCCTCTGGGGATCAACCCCTCTACAATGAAGATAGACAAATAGTTGTTACTGTGAACGGAGAAATATATAACCACGAGAAACTGAGGGAACAGCTCAACTCTCACAAGTTTCACACTGGTAGTGATTGTGAAATTGTAGCTCATCTCTACGAGGACTATGGTGAGGAGTTTGTGGACATGTTGGATGGAATGTTCTCTTTCGTTTTGCTTGACACACGTGACCAGAGTTTCATAGCTGCTCGAGATGCTTTTGGAATCACTCCCCTCTATATCGGCTGGGGGCTTGATGGATCTGTTTGGTTTGCGTCAGAGATGAAAGCTTTGCATGTTGATTGTGAACGTTTTGAGTCGTTTCCCCCGGGACATATATACTCCAGCAAACAAGGAGGCCTGCGCAGATGGTATAACCCAACTTGGTATTCAGAAAATCATATACCGTCCACTCCATATGACCCTTTGATTCTGAGACGAGCATTTGAGAAAGCAGTCATAAAAAGGCTGATGACTGATGTTCCATTTGGAGTACTGTTATCAGGAGGGCTCGACTCATCCTTAGTTGCAGCAGTTGCAGCTCGCTATTTGGCTGCTACCAAGGCTGCAAAACAGTGGGGAGAGCAACTACACTCTTTCTGCGTTGGTTTGCAGGGATCGCCAGATCTAAAGGCTGCAAAAGAGGTTGCAGAGTATCTCGGTACCGTTCATCACGAATTCCATTTTACAGTGCAGGATGGTATAGATGCAATCGAGGACGTTATATACCACGTTGAAACATACGACGTGACAACTATCAGAGCAAGCACGCCCATGTTCTTGATGTCTCGGAAAATCAAGTCGCTAGGAGTGAAGATGGTTCTGTCTGGAGAAGGATCAGACGAGATATTTGGGGGCTATTTGTACTTTCACAAAGCTCCTAACAAAGAGGAATTCCACCAGGAAACATGCCGCAAGATAAAGGCTCTTCACATGTATGATTGCTTGAGGGCTAATAAGTCAACATCTGCATGGGGTGTGGAGGCCCGTGTTCCATTTTTAGATAAGGAATTCATCAACGTTGCCATGGACATTGATCCCGAGTGGAAGATGGTGAAGCCTGACATTGGGCGCATGGAGAAGTGGGTCTTGCGGAAGGCATTCGACGACGAGCAAGAATCCTTATCTTCCCAAGCACATTCTGTACAGACAGAAGGAGCAATTCAGCGATGGGGTTGGGTACAGTTGGATTGACGGCTTAAAATCACATGCGGCAGAGCATGTGACAGATACGATGCTGGGCAATGCCAAATATATATTCCCCCATAATACTCCCACTACAAAGGAGGCGTACTACTACAGGATGATATTTGAAAGATTCTATCCTCAGAACGCGGCACGGTTGACGGTTCCGGGCGGGCCGAGCGTGGCTTGCAGCACCGCAAAGGCCGTGGAATGGGATGCTGGGTGGGCTCACAATCTGGATCCCTCTGGCAGGGCCGCTCTAGGCGTCCATGCATCGGCATACCAAGAATCTAAAAATAGCGTCACCGCCAATGGGAATGTGGACATGTTGCGCAAAATATCGCCAAAAATGGAGACAGTCGGCGCTCCACAAGTCGTTATCAACTGTTAGGTGTTGACGGAGAGAAGCTGTCGCTGGGAACCGCTGACGAGTCTGGCTGTCTTTATCACTACACTGGTTGAGCTGTCTGTCCAGTTAACCCATCCACACAAATGGGCGGGCCGACTAAATGTTTGTTGACCATCCGTCCTATTTCACTACGAGTAAGCGACGGCTTGTATGTATGCAATGGCTGTTTGGGATACGCGTTTTCCATTTGCTAGCTTTTATGTATCAAGATGTCGCGTGATCACGTTTTTACGTTCATGGTTGTTTAAATGTTTTGTCGGATAAATATCATGATATTGTAAATTTTTGTAAGTTCTTTTGGTTTTAACTAAAGAAAATATTGGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGACCCTCGGGTTGAACC

Ace file of the UniGene sp_v3.0_unigene3120

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Asparagine synthetase n=3 Tax=Pinaceae RepID=E7EAQ2_PINPS	-	-	89%
FL-Next	sp=Asparagine synthetase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	95%
Sma3	Asparagine synthetase	-	-	-

Source	ECs	Term	Type	e value	Identity
Sma3	Asparagine synthase (glutamine-hydrolyzing).	EC:6.3.5.4	-	0.0	-

Source	KEGGs	Term	Identity
Sma3	Alanine, aspartate and glutamate metabolism	00250	%
Sma3	Nitrogen metabolism	00910	%
Sma3	Metabolic pathways	01100	%
Sma3	Biosynthesis of secondary metabolites	01110	%

Source	Gene names
Sma3	117M18_15; 40.t00045; AND1; ANS1; AS; AS1; AS2; AS3; ASN1; ASN2; ASN3; ASNB; As1; As2; AsAS1; AsAS2; Asn1; AsnS1; AsnS2; AsnS3; AsnS4; At3g47340; At5g10240; At5g65010; CHLREDRAFT_109602; CHLREDRAFT_140252; F18D22_10; GSVIVT00005225001; GSVIVT00012863001;

Source	GOs	Term	Type	Identity
Sma3	asparagine synthase (glutamine-hydrolyzing) activity	GO:0004066	Molecular Function	-
Sma3	asparagine biosynthetic process	GO:0006529	Biological Process	-
Sma3	glutamine metabolic process	GO:0006541	Biological Process	-
Sma3	metabolic process	GO:0008152	Biological Process	-
Sma3	cellular amino acid catabolic process	GO:0009063	Biological Process	-
Sma3	response to absence of light	GO:0009646	Biological Process	-
Sma3	response to sucrose stimulus	GO:0009744	Biological Process	-
Sma3	response to glucose stimulus	GO:0009749	Biological Process	-
Sma3	response to fructose stimulus	GO:0009750	Biological Process	-
Sma3	cellular response to sucrose starvation	GO:0043617	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Glutamine amidotransferase, class-II	IPR000583	-	-
Sma3	Asparagine synthase	IPR001962	-	-
Sma3	Asparagine synthase, glutamine-hydrolyzing	IPR006426	-	-
Sma3	Rossmann-like alpha/beta/alpha sandwich fold	IPR014729	-	-
Sma3	Glutamine amidotransferase, type II	IPR017932	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G65010.2	-	82%
RefSeq	Arabidopsis thaliana	NP_851272.1	asparagine synthetase 2 [Arabidopsis thaliana]	82%
RefSeq	Populus trichocarpa	XP_002313246.1	predicted protein [Populus trichocarpa]	84%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: B8LMV0

Fln msg: Overlapping hits, possible frame ERROR between 1379 and 1378,

Fln protein: MCGILAVFGCLDASQAKRARVLELSRRLRHRGPDWSGLYQSGHSFLAHQRLAIVDPASGDQPLYNEDRQIVVTVNGEIYNHEKLREQLNSHKFHTGSDCEIVAHLYEDYGEEFVDMLDGMFSFVLLDTRDQSFIAARDAFGITPLYIGWGLDGSVWFASEMKALHVDCERFESFPPGHIYSSKQGGLRRWYNPTWYSENHIPSTPYDPLILRRAFEKAVIKRLMTDVPFGVLLSGGLDSSLVAAVAARYLAATKAAKQWGEQLHSFCVGLQGSPDLKAAKEVAEYLGTVHHEFHFTVQDGIDAIEDVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVLSGEGSDEIFGGYLYFHKAPNKEEFHQETCRKIKALHMYDCLRANKSTSAWGVEARVPFLDKEFINVAMDIDPEWKMVKPDIGRMEKWVLRKAFDDExxNPYLPKHILYRQKEQFSDGVGYSWIDGLKSHAAEHVTDTMLGNAKYIFPHNTPTTKEAYYYRMIFERFYPQNAARLTVPGGPSVACSTAKAVEWDAGWAHNLDPSGRAALGVHASAYQESKNSVTANGNVDMLRKISPKMETVGAPQVVINC*

Protein Length: 593

Fln nts: CAGAGTTAGAAATATCCGAAAGATCCTTAAAGAATAATCGGTTTTGGTATTTTCAGTCAGTCACC_-_ATGTGCGGAATTCTGGCTGTGTTCGGTTGCTTGGACGCATCGCAGGCCAAGCGCGCACGGGTTCTGGAGCTCTCGCGAAGGCTACGGCATAGAGGCCCTGATTGGAGCGGGCTGTATCAGAGCGGGCATTCCTTTCTTGCTCACCAGAGGTTGGCCATCGTAGATCCTGCCTCTGGGGATCAACCCCTCTACAATGAAGATAGACAAATAGTTGTTACTGTGAACGGAGAAATATATAACCACGAGAAACTGAGGGAACAGCTCAACTCTCACAAGTTTCACACTGGTAGTGATTGTGAAATTGTAGCTCATCTCTACGAGGACTATGGTGAGGAGTTTGTGGACATGTTGGATGGAATGTTCTCTTTCGTTTTGCTTGACACACGTGACCAGAGTTTCATAGCTGCTCGAGATGCTTTTGGAATCACTCCCCTCTATATCGGCTGGGGGCTTGATGGATCTGTTTGGTTTGCGTCAGAGATGAAAGCTTTGCATGTTGATTGTGAACGTTTTGAGTCGTTTCCCCCGGGACATATATACTCCAGCAAACAAGGAGGCCTGCGCAGATGGTATAACCCAACTTGGTATTCAGAAAATCATATACCGTCCACTCCATATGACCCTTTGATTCTGAGACGAGCATTTGAGAAAGCAGTCATAAAAAGGCTGATGACTGATGTTCCATTTGGAGTACTGTTATCAGGAGGGCTCGACTCATCCTTAGTTGCAGCAGTTGCAGCTCGCTATTTGGCTGCTACCAAGGCTGCAAAACAGTGGGGAGAGCAACTACACTCTTTCTGCGTTGGTTTGCAGGGATCGCCAGATCTAAAGGCTGCAAAAGAGGTTGCAGAGTATCTCGGTACCGTTCATCACGAATTCCATTTTACAGTGCAGGATGGTATAGATGCAATCGAGGACGTTATATACCACGTTGAAACATACGACGTGACAACTATCAGAGCAAGCACGCCCATGTTCTTGATGTCTCGGAAAATCAAGTCGCTAGGAGTGAAGATGGTTCTGTCTGGAGAAGGATCAGACGAGATATTTGGGGGCTATTTGTACTTTCACAAAGCTCCTAACAAAGAGGAATTCCACCAGGAAACATGCCGCAAGATAAAGGCTCTTCACATGTATGATTGCTTGAGGGCTAATAAGTCAACATCTGCATGGGGTGTGGAGGCCCGTGTTCCATTTTTAGATAAGGAATTCATCAACGTTGCCATGGACATTGATCCCGAGTGGAAGATGGTGAAGCCTGACATTGGGCGCATGGAGAAGTGGGTCTTGCGGAAGGCATTCGACGACGAGxxxxxxAATCCTTATCTTCCCAAGCACATTCTGTACAGACAGAAGGAGCAATTCAGCGATGGGGTTGGGTACAGTTGGATTGACGGCTTAAAATCACATGCGGCAGAGCATGTGACAGATACGATGCTGGGCAATGCCAAATATATATTCCCCCATAATACTCCCACTACAAAGGAGGCGTACTACTACAGGATGATATTTGAAAGATTCTATCCTCAGAACGCGGCACGGTTGACGGTTCCGGGCGGGCCGAGCGTGGCTTGCAGCACCGCAAAGGCCGTGGAATGGGATGCTGGGTGGGCTCACAATCTGGATCCCTCTGGCAGGGCCGCTCTAGGCGTCCATGCATCGGCATACCAAGAATCTAAAAATAGCGTCACCGCCAATGGGAATGTGGACATGTTGCGCAAAATATCGCCAAAAATGGAGACAGTCGGCGCTCCACAAGTCGTTATCAACTGTTAG___GTGTTGACGGAGAGAAGCTGTCGCTGGGAACCGCTGACGAGTCTGGCTGTCTTTATCACTACACTGGTTGAGCTGTCTGTCCAGTTAACCCATCCACACAAATGGGCGGGCCGACTAAATGTTTGTTGACCATCCGTCCTATTTCACTACGAGTAAGCGACGGCTTGTATGTATGCAATGGCTGTTTGGGATACGCGTTTTCCATTTGCTAGCTTTTATGTATCAAGATGTCGCGTGATCACGTTTTTACGTTCATGGTTGTTTAAATGTTTTGTCGGATAAATATCATGATATTGTAAATTTTTGTAAGTTCTTTTGGTTTTAACTAAAGAAAATATTGGGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGACCCTCGGGTTGAACC

Fln Alignment:

Contig3120___MCGILAVFGCLDASQAKRARVLELSRRLRHRGPDWSGLYQSGHSFLAHQRLAIVDPASGDQPLYNEDRQIVVTVNGEIYNHEKLREQLNSHKFHTGSDCEIVAHLYEDYGEEFVDMLDGMFSFVLLDTRDQSFIAARDAFGITPLYIGWGLDGSVWFASEMKALHVDCERFESFPPGHIYSSKQGGLRRWYNPTWYSENHIPSTPYDPLILRRAFEKAVIKRLMTDVPFXXXXXXXXXXXXXXXXXXXXXXXXXXXKQWGEQLHSFCVGLQGSPDLKAAKEVAEYLGTVHHEFHFTVQDGIDAIEDVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVLSGEGSDEIFGGYLYFHKAPNKEEFHQETCRKIKALHMYDCLRANKSTSAWGVEARVPFLDKEFINVAMDIDPEWKMVKPDIGRMEKWVLRKAFDDExNPYLPKHILYRQKEQFSDGVGYSWIDGLKSHAAEHVTDTMLGNAKYIFPHNTPTTKEAYYYRMIFERFYPQNAARLTVPGGPSVACSTAKAVEWDAGWAHNLDPSGRAALGVHASAYQESKNSVTANGNVDMLRKISPKM-ETVGAPQVVI
B8LMV0______________MCGILAVFGCLDTSQAKRARVLELSRRLRHRGPDWSGLYHSGHSFLAHQRLAIVDPASGDQPLYNEDRQIVVTVNGEIYNHEKLREQLNSHKFNTGSDCEIVAHLYEDYGEEFVNMLDGMFSFVLLDTRDQSFIAARDAFGITSLYIGWGLDGSVWFASEMKALHDDCERFESFPPGHIYSSKQGGLRRWYNPPWYSESLIPSTPYDPLVLRRAFEKAVIKRLMTDVPFGVLLSGGLDSSLVAAVAARHLATTNAAKQWGEQLHSFCVGLQGSPDLKAAKEVAEYLGTFHHEFHFTVQDGIDAIEDVIYHVETYDVTTIRASTPMFLMSRKIKSLGVKMVLSGEGSDEIFGGYLYFHKAPNREEFHQETCRKIKALHMYDCLRANKSTSAWGVEARVPFLDKEFINIAMDIDPDWKMVKPDIGRIEKWVLRKAFDEExNPYLPKHILYRQKEQFSDGVGYSWIDGLKSHAAEHVTDTMLGNAKYIFPHNTPTTKEAYYYRTIFERLYPQNAARLTVPGGPSVACSSAKAVEWDDGWAGNLDPSGRAALGVHASAYQESKNSVAANGSVDMLGKLPPTMKENVGARQIVI

SNPs (tot: 4)

Position	A %	C %	G %	T %	Probability
2016	80	20			1.0
2058			27	72	1.0
2073		70	30		1.0
2087		42		57	1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain