SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3117

Length: 2231 nt

This UniGene was originaly assembled in antisense
ACE File: antisense
Fasta: sense

UniGene Fasta (sense)

>sp_v3.0_unigene3117
ATGGGATTGCGTAAGCTCTGATGGGGACACATGGCCTGATCCACAGCCATAAGGTTGCAGGACTCTTCTTATTTAGGCACCCTCGGGCTTGGGCTTGAAAAACAATCAGCGAGAATTCCTTCCAGCATCGCCGATGCTACAGCCTTAAACCTGTGTTGCATCCACCATTAATTAGAGTTGGCCAGAGCAGAGGTGCTATATAGATATTTTGATTGGGGATAGGATTATAACATGGCTCCAATTGATCCCCATTCCTTCACAGACTCCATGCATCCTCTAACAAAGCATGTCCATCTTTCATTGTATTTTGATTTTAATAGCAAAACGATTGATGGGTCTGCGATTTTAACTCTTGAAAGTCCATATTCTGGAGATCTATATCTTGATACCAGATGCCTCAAAATCCATGGAGTTTACAATGATGCTAGTAATTCCGCTTCGCCTTCTGCTTACATACCTTTCATTTTGGAAAATCCAGATCCCATCAAGGGCTCTCTTCTCAGAGTTTCTCTTATAAATCAAAGCTCTTTTGCCATAATATTCAAAACCCATCAATCTGCTTCAGCTATTCAGTGGTTGAATCCAGCACAGACCGCAGGGAAAAAATTCCCGTATGTATACACTCAATGCCAGTCTATCCATGCTCGTTCTATATTCCCCTGTCAGGACACTCCCAGAGCGAGGATTCGGTACTCGGCTGTGCTAAACATTCCTGAACAGATGAGCTCTGTAATGTCTGCCGCCCATAAGGGCCGGATGGCTCCTTCCACAGGAGAAGGAAAGGGAGCATGCCCTGATGAGAAGTGGACGATGCATGGAAGAGTTGTTGAGAATTTTTCAATGCAGCAGCCAATACCTCCATATCTGTTTGCATTTGCTGTGGGAAATATCGTTTTTAAGGAGGTTGGTCCCAGGACTAGGATCTATTCTGAACCTTGTCCTGTTCTGGAAGCTGCAGAAAATGAGTTCAGAAACACAGAGGAGATGATAAAGCAGGGGGAAAAGCTCTTTGGTGAATATGAATGGGAGAGATTTGATCTCCTTGTATTGCCCCCGAGTTTCCCATATGGAGGAATGGAGAATCCCAGGTTGGTTTTCTTAACCCCCACTGTCATCGCAGGGGATTTGAGTGGTGGGCAAGTTGTGGCACATGAGCTTGCACACAGCTGGACAGGAAATCTAATCACCAATGCCACAAATAATGACTTTTGGCTAAATGAGGGTTTTACGACATATGCAGAGCGAAGAATTGTGGAAGTTGTGCAGGGCGAGGAGCGCGCTGCTTTGAACATTGGTTTAGGCTGTTCAGAATTGAAGGATGAGATGAAGAGATTCAAGGATAATATGGAATTTACCAAATTGAGAACAAATCAGGATGGGGTTGATCCCGATCATGTTTACTCTTCTGTCCCTTACGAAAAGGGTTTTCAGTTCCTTTGGCGTATTGAGCGTCAGGTTGGGCGCCCCGTCTTCGATGAGTTTCTGAAGAAGTATATCCGTTCTTTCAAGTTCCAATCGATTGATACTGATACATTCCTGGCCTTTCTGAAGAAGAATCTTCCCGGCATAGAGAATGAAATTGATTTGGATGTTTGGGTAGATGGGACTGGAATTCCTCCAGATGTCATGGAGCCCATTTCTACCATCCACGACAAGATCTTGTCTGCATCACGGGACTTCGTTGCCGGACGAATCCCTTCTGATGAGGAAGTGAGCAAGTGGCAGGGTCAAGAGTGGCAGCTTTACTTGGAGAGTCTACCCAAAAAACTTGCACCATCACAGATATCAGCTCTAGATGGACGATTTCAATTTAGCATGAGCAAGAATTGGGATGTCAAAGTGGCATTCTTGACAATTGTTGCATATTCTGGTTACAAACCTCTCTTTCAGGAGATCGATAGATGTCTTAAAGAAATAGGAAGAATGAAGTATCTGAGGCAGCTCTATGCAGGTTTGTTGCAAAGCAACTTGGAAGAAGGGAAGAGTTTTGCTAGAAGAGTGTTTGAGGAAGCCAGAGACTTCTATCATCCAATTGCTCAGGGTGTGGTTGAGTCCCTTTTGACCAAATTTACATAGAGATGTATAATCAGCATATAAATGAAGGTAGAAAACCTTTATCAACTTTTTGTTCATTGTAATGCCAATGCTGTGTGCATTAACAAACTCTTATTAAATATAGTTAGTATATACATCGTTCTTTGCATCCGCACGACTTTTAATGTGAGACATTG

Ace file of the UniGene sp_v3.0_unigene3117 (antisense)

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Leukotriene A-4 hydrolase, putative n=1 Tax=Ricinus communis RepID=B9SD61_RICCO	-	-	0.0	63%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	89%
Sma3	Leukotriene A-4 hydrolase, putative	-	-	4.39e-09	-

Source	Gene names
Sma3	At5g13520; GSVIVT00029481001; LOC_Os03g60460; OJ1754_E06.9; Os03g0819100; OsI_14085; OsJ_13129; POPTRDRAFT_567536; POPTRDRAFT_832515; RCOM_1071080; RCOM_1071200; RCOM_2125730; T6I14_50; VITISV_017527;

Source	GOs	Term	Type	Identity
Sma3	inositol or phosphatidylinositol kinase activity	GO:0004428	Molecular Function	-
Sma3	metallopeptidase activity	GO:0008237	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	leukotriene biosynthetic process	GO:0019370	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Oxidoreductase, molybdopterin-binding domain	IPR000572	-	-
Sma3	Phosphoinositide 3-kinase, accessory (PIK) domain	IPR001263	-	-
Sma3	Peptidase M1, alanine aminopeptidase/leukotriene A4 hydrolase	IPR001930	-	-
Sma3	Peptidase M1, membrane alanine aminopeptidase, N-terminal	IPR014782	-	-
Sma3	Peptidase M1, leukotriene A4 hydrolase, aminopeptidase C-terminal	IPR015211	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT5G13520.1	peptidase M1 family protein chr5:4342117-4344571 REVERSE LENGTH=616	62%
RefSeq	Arabidopsis thaliana	NP_196856.1	leukotriene-A4 hydrolase [Arabidopsis thaliana]	62%
RefSeq	Populus trichocarpa	XP_002311120.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A828

Fln msg:

Fln protein: MAPIDPHSFTDSMHPLTKHVHLSLYFDFNSKTIDGSAILTLESPYSGDLYLDTRCLKIHGVYNDASNSASPSAYIPFILENPDPIKGSLLRVSLINQSSFAIIFKTHQSASAIQWLNPAQTAGKKFPYVYTQCQSIHARSIFPCQDTPRARIRYSAVLNIPEQMSSVMSAAHKGRMAPSTGEGKGACPDEKWTMHGRVVENFSMQQPIPPYLFAFAVGNIVFKEVGPRTRIYSEPCPVLEAAENEFRNTEEMIKQGEKLFGEYEWERFDLLVLPPSFPYGGMENPRLVFLTPTVIAGDLSGGQVVAHELAHSWTGNLITNATNNDFWLNEGFTTYAERRIVEVVQGEERAALNIGLGCSELKDEMKRFKDNMEFTKLRTNQDGVDPDHVYSSVPYEKGFQFLWRIERQVGRPVFDEFLKKYIRSFKFQSIDTDTFLAFLKKNLPGIENEIDLDVWVDGTGIPPDVMEPISTIHDKILSASRDFVAGRIPSDEEVSKWQGQEWQLYLESLPKKLAPSQISALDGRFQFSMSKNWDVKVAFLTIVAYSGYKPLFQEIDRCLKEIGRMKYLRQLYAGLLQSNLEEGKSFARRVFEEARDFYHPIAQGVVESLLTKFT*

Protein Length: 616

Fln nts: ATGGGATTGCGTAAGCTCTGATGGGGACACATGGCCTGATCCACAGCCATAAGGTTGCAGGACTCTTCTTATTTAGGCACCCTCGGGCTTGGGCTTGAAAAACAATCAGCGAGAATTCCTTCCAGCATCGCCGATGCTACAGCCTTAAACCTGTGTTGCATCCACCATTAATTAGAGTTGGCCAGAGCAGAGGTGCTATATAGATATTTTGATTGGGGATAGGATTATAAC_-_ATGGCTCCAATTGATCCCCATTCCTTCACAGACTCCATGCATCCTCTAACAAAGCATGTCCATCTTTCATTGTATTTTGATTTTAATAGCAAAACGATTGATGGGTCTGCGATTTTAACTCTTGAAAGTCCATATTCTGGAGATCTATATCTTGATACCAGATGCCTCAAAATCCATGGAGTTTACAATGATGCTAGTAATTCCGCTTCGCCTTCTGCTTACATACCTTTCATTTTGGAAAATCCAGATCCCATCAAGGGCTCTCTTCTCAGAGTTTCTCTTATAAATCAAAGCTCTTTTGCCATAATATTCAAAACCCATCAATCTGCTTCAGCTATTCAGTGGTTGAATCCAGCACAGACCGCAGGGAAAAAATTCCCGTATGTATACACTCAATGCCAGTCTATCCATGCTCGTTCTATATTCCCCTGTCAGGACACTCCCAGAGCGAGGATTCGGTACTCGGCTGTGCTAAACATTCCTGAACAGATGAGCTCTGTAATGTCTGCCGCCCATAAGGGCCGGATGGCTCCTTCCACAGGAGAAGGAAAGGGAGCATGCCCTGATGAGAAGTGGACGATGCATGGAAGAGTTGTTGAGAATTTTTCAATGCAGCAGCCAATACCTCCATATCTGTTTGCATTTGCTGTGGGAAATATCGTTTTTAAGGAGGTTGGTCCCAGGACTAGGATCTATTCTGAACCTTGTCCTGTTCTGGAAGCTGCAGAAAATGAGTTCAGAAACACAGAGGAGATGATAAAGCAGGGGGAAAAGCTCTTTGGTGAATATGAATGGGAGAGATTTGATCTCCTTGTATTGCCCCCGAGTTTCCCATATGGAGGAATGGAGAATCCCAGGTTGGTTTTCTTAACCCCCACTGTCATCGCAGGGGATTTGAGTGGTGGGCAAGTTGTGGCACATGAGCTTGCACACAGCTGGACAGGAAATCTAATCACCAATGCCACAAATAATGACTTTTGGCTAAATGAGGGTTTTACGACATATGCAGAGCGAAGAATTGTGGAAGTTGTGCAGGGCGAGGAGCGCGCTGCTTTGAACATTGGTTTAGGCTGTTCAGAATTGAAGGATGAGATGAAGAGATTCAAGGATAATATGGAATTTACCAAATTGAGAACAAATCAGGATGGGGTTGATCCCGATCATGTTTACTCTTCTGTCCCTTACGAAAAGGGTTTTCAGTTCCTTTGGCGTATTGAGCGTCAGGTTGGGCGCCCCGTCTTCGATGAGTTTCTGAAGAAGTATATCCGTTCTTTCAAGTTCCAATCGATTGATACTGATACATTCCTGGCCTTTCTGAAGAAGAATCTTCCCGGCATAGAGAATGAAATTGATTTGGATGTTTGGGTAGATGGGACTGGAATTCCTCCAGATGTCATGGAGCCCATTTCTACCATCCACGACAAGATCTTGTCTGCATCACGGGACTTCGTTGCCGGACGAATCCCTTCTGATGAGGAAGTGAGCAAGTGGCAGGGTCAAGAGTGGCAGCTTTACTTGGAGAGTCTACCCAAAAAACTTGCACCATCACAGATATCAGCTCTAGATGGACGATTTCAATTTAGCATGAGCAAGAATTGGGATGTCAAAGTGGCATTCTTGACAATTGTTGCATATTCTGGTTACAAACCTCTCTTTCAGGAGATCGATAGATGTCTTAAAGAAATAGGAAGAATGAAGTATCTGAGGCAGCTCTATGCAGGTTTGTTGCAAAGCAACTTGGAAGAAGGGAAGAGTTTTGCTAGAAGAGTGTTTGAGGAAGCCAGAGACTTCTATCATCCAATTGCTCAGGGTGTGGTTGAGTCCCTTTTGACCAAATTTACATAG___AGATGTATAATCAGCATATAAATGAAGGTAGAAAACCTTTATCAACTTTTTGTTCATTGTAATGCCAATGCTGTGTGCATTAACAAACTCTTATTAAATATAGTTAGTATATACATCGTTCTTTGCATCCGCACGACTTTTAATGTGAGACATTG

Fln Alignment:

Contig3117___MAPIDPHSFTDSMHPLTKHVHLSLYFDFNSKTIDGSAILTLESPYSGDLYLDTRCLKIHGVYNDASNSASPSAYIPFILENPDPIKGSLLRVSLINQSSFAIIFKTHQSASAIQWLNPAQTAGKKFPYVYTQCQSIHARSIFPCQDTPRARIRYSAVLNIPEQMSSVMSAAHKGRMAPSTGEGKGACPDEKWTMHGRVVENFSMQQPIPPYLFAFAVGNIVFKEVGPRTRIYSEPCPVLEAAENEFRNTEEMIKQGEKLFGEYEWERFDLLVLPPSFPYGGMENPRLVFLTPTVIAGDLSGGQVVAHELAHSWTGNLITNATNNDFWLNEGFTTYAERRIVEVVQGEERAALNIGLGCSELKDEMKRFKDNMEFTKLRTNQDGVDPDHVYSSVPYEKGFQFLWRIERQVGRPVFDEFLKKYIRSFKFQSIDTDTFLAFLKKNLPGIENEIDLDVWVDGTGIPPDVMEPISTIHDKILSASRDFVAGRIPSDEEVSKWQGQEWQLYLESLPKKLAPSQISALDGRFQFSMSKNWDVKVAFLTIVAYSGYKPLFQEIDRCLKEIGRMKYLRQLYAGLLQSNLEEGKSFARRVFEEARDFYHPIAQGVVESLLTKFT
D5A828______________MAPVDPHSFTDSLHPLTKHVHLSLYFDFDSKTIDGSAILTLESPYSGDLYLDTRCLKIHGVYHDTTKSFSSSASIPFILENPDPIKGTLLRVSLTNQISFIITFKTDQSASAIQWLNPAQTAGKKFPYVYAQCQSIYARSIFPCQDTPRARIQYSALLNIPEQMSSVMSAAHKGRMAPLIGEANGACLDEKWAMHGRVVEHFSMHQPIPPYLFAFAVGNIVSKEVGPTTRIYSEPCPVLEAAELEFKNTEEMIKQGEKLFGDYEWERFDLLVLPPSFPYGGMENPRMVFLTPTVIAGDLSGGQVVAHELAHSWTGNLITNATNNDFWLNEGFTTYAERRIVEVVQGEERAALNIGLGCSDLKNEMQRFKDNMEFTKLRTNQEGVDPDDVYSTVPFEKGFQFLWRIERQVGRPVFDEFLKKYIWHFKFQSIDTDTFLAFLKRNLPGIEDEVDLDIWIDGTGIPPDAMDPISTIHDKILSASRDFIAGRMPSDEEVSKWQGQECQLYLESLPKKLEPSQISALDGRFRFSMSHNWDVKVAFLTIVAYSGYKALFQEIDKCLKEIGRMKYLRLLYTGLLQSDLEEGKQFARRVFEEARDLYHPIAQGVIESLLTKST

SNPs (tot: 34)

Position	A %	C %	G %	T %	Probability
1409	87		12		0.992554
1418		12		87	0.992554
1465			87	12	0.992554
1795	84		15		0.999986
1912			62	37	1.0
1949	11			88	0.923564
2120	40	60			1.0
2130		10	90		0.90298
2131		11		66	0.999999
2132		11		88	0.923564
2133	11			88	0.923564
2134		11		88	0.923564
2135		12		87	0.992554
2137	87	12			0.992554
2139			87	12	0.992554
2144	83		16		0.994512
2155		16	83		0.994512
2158		16		83	0.994512
2160	83			16	0.994512
2177	80			20	0.995493
2178	80		20		0.995493
2179	20	80			0.995493
2180		80	20		0.995493
2182			20	80	0.995493
2184		20		80	0.995493
2185	20		80		0.995493
2188		20		80	0.995493
2189	20		80		0.995493
2190	20			80	0.995493
2197		20	80		0.995493
2199	20	80			0.995493
2201	80		20		0.995493
2210		66		33	0.997452
2211	33	66			0.997452

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain