SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3114

Length: 1366 nt

UniGene Fasta

Ace file of the UniGene sp_v3.0_unigene3114

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative phragmoplast-associated kinesin-related protein [Arabidopsis thaliana] gb\|AAM74514.1\| AT3g23670/MDB19_16 [Arabidopsis thaliana] gb\|AAN16470.1\| phragmoplast-associated kinesin-related protein 1-like protein [Arabidopsis thaliana] gb\|AAN16471.1\| ph	-	-	0.0	48%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	54%
Sma3	Phragmoplast-associated kinesin-related protein 1	-	-	5.743e-09	-

Source	Gene names
Sma3	AT4g14150; At3g23670; At4g14150; GSVIVT00031645001; OSIGBa0144C23.2; OSJNBa0038P21.12; OSJNBa0048K16.12; Os04g0350300; OsI_07265; OsI_15450; OsI_15463; OsJ_06785; OsJ_14379; PAKRP1; PAKRP1L; POPTRDRAFT_572919; POPTRDRAFT_756178; RCOM_0046500; RCOM_1645450

Source	GOs	Term	Type	Identity
Sma3	microtubule associated complex	GO:0005875	Cellular Component	-
Sma3	phragmoplast	GO:0009524	Cellular Component	-
Sma3	microtubule motor activity	GO:0003777	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	plus-end-directed microtubule motor activity	GO:0008574	Molecular Function	-
Sma3	phragmoplast assembly	GO:0000914	Biological Process	-
Sma3	microtubule-based movement	GO:0007018	Biological Process	-
Sma3	actin filament polymerization	GO:0030041	Biological Process	-
Sma3	microgametogenesis	GO:0055046	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Kinesin, motor domain	IPR001752	-	-
Sma3	ARP23 complex 20kDa subunit	IPR008384	-	-
Sma3	Kinesin-related conserved domain	IPR010544	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT3G23670.1	PAKRP1L, KINESIN-12B phragmoplast-associated kinesin-related protein, putative chr3:8519290-8525055 FORWARD LENGTH=1313	52%
RefSeq	Arabidopsis thaliana	NP_189009.2	putative phragmoplast-associated kinesin-related protein [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002321106.1	predicted protein [Populus trichocarpa]	52%

Full-Lengther Next Prediction

Fln status: Internal

Fln database: tr_plants

Fln subject: F6GWE6

Fln msg: Distance to subject end: 19 aas, your sequence is shorter than subject: 455 - 1340

Fln protein: REMALEETCNKQAAEIEQLNRLIRQYRHERECNSIIQQSREDKIVRLEALMDDVISTEDFVDAEFATLMNEHKLLKDKYENHPEVTRANIEQKSAMEELERYRNFYELGERDALLEEIQDLRSQLQSYLEPSSPRSIRKRLSLTPQSMSKSEHRESDHRLALCAIPETHGISTHSHSLADAPTDVSIRTSKKLDCSSSHNEKWEEERQQWTERESEWISLAEELRLELNSYRRLAEKRKQELDCEQRCSQELKEAFQMAMDGHARLLDQYADLQEKHTALHAKHRKIKEGVADIKRVAAKAGVKGAESRFIEAQAAQLIALKLDRDREQKMMKEEIKGLQAQLRDTAEAVQAAGELLVRLKEAEEAISIAQESAAIAERNAEIMRRDMEKMSRKHATEMATINQRLLEARLVKSRVCPMCQVADRVKYEFPDADEATLEAEAAAKEEQTMSTPEG

Protein Length: 456

Fln nts: GCGAGAAATGGCATTGGAAGAGACCTGCAACAAACAGGCTGCTGAGATCGAACAGTTGAACCGCTTGATCCGACAGTACAGACATGAAAGAGAATGCAATAGCATCATACAGCAGAGTAGAGAGGATAAAATTGTTCGCCTTGAGGCCCTTATGGATGATGTTATTTCCACAGAGGACTTCGTGGACGCAGAATTTGCAACATTAATGAATGAACACAAGCTTTTAAAAGATAAATATGAAAATCACCCAGAGGTGACACGAGCAAACATTGAGCAAAAGTCCGCGATGGAGGAGCTTGAGAGGTATCGGAACTTCTATGAACTGGGTGAAAGAGATGCGCTGCTTGAAGAGATACAAGATCTTCGGTCACAATTGCAGTCATATTTGGAGCCCAGTTCTCCAAGATCTATCAGAAAACGACTTTCATTGACACCCCAATCAATGTCTAAATCCGAGCATCGTGAATCTGATCATCGCCTTGCTCTTTGTGCCATCCCCGAGACTCACGGAATTTCTACTCACTCTCACTCTCTTGCTGACGCTCCTACTGATGTTTCCATCCGTACGAGTAAGAAACTTGATTGTAGTAGTTCCCATAATGAGAAATGGGAAGAGGAGAGGCAGCAGTGGACGGAAAGGGAAAGTGAGTGGATTTCCTTAGCTGAAGAATTAAGATTAGAACTTAATTCATATAGACGCTTGGCAGAAAAAAGAAAGCAAGAACTTGATTGTGAACAGAGATGCTCCCAGGAGTTGAAGGAAGCCTTCCAGATGGCAATGGATGGTCATGCACGCCTCTTAGATCAGTATGCAGATCTGCAAGAGAAGCATACTGCTTTGCATGCTAAGCACCGAAAAATTAAGGAAGGTGTAGCAGATATAAAACGAGTAGCTGCAAAGGCTGGAGTTAAGGGAGCTGAATCACGTTTCATTGAAGCTCAAGCAGCACAACTTATTGCCTTGAAACTTGACAGAGACAGAGAGCAGAAAATGATGAAAGAAGAAATAAAGGGGCTACAAGCTCAGTTAAGGGACACAGCGGAAGCCGTTCAAGCGGCAGGAGAGTTGCTTGTACGATTGAAAGAAGCAGAGGAAGCTATATCTATAGCTCAAGAGTCTGCAGCAATTGCAGAACGAAATGCAGAAATTATGCGCAGGGACATGGAGAAGATGTCTCGAAAACATGCTACTGAGATGGCTACAATAAATCAGCGGCTTCTAGAGGCTCGACTTGTAAAATCTCGTGTTTGTCCAATGTGCCAGGTTGCTGATCGTGTTAAATATGAATTCCCAGATGCTGATGAGGCCACTCTTGAGGCCGAAGCTGCTGCAAAAGAAGAGCAAACGATGTCAACACCCGAGGGT

Fln Alignment:

Contig3114___REMALEETCNKQAAEIEQLNRLIRQYRHERECNSIIQQSREDKIVRLEALMDDVISTEDFVDAEFATLMNEHKLLKDKYENHPEVTRANIEQKSAMEELERYRNFYELGERDALLEEIQDLRSQLQSYLEPSSPRSIRKRLSLTPQSMSKSEHRESDHRLALCAIPETHGISTHSHSLADAPTDVSIRTSKKLDCSSSHNXXXXXXXXXXXXXXXXXISLAEELRLELNSYRRLAEKRKQELDCEQRCSQELKEAFQMAMDGHARLLDQYADLQEKHTALHAKHRKIKEGVADIKRXXXXXXXXXXESRFIEAQAAQLIALKLDRDREQKMMKEEIKGLQAQLRDTAEAVQAAGELLVRLKXXXXXXXXXXXXXXXXXRNAEIMRRDMEKMSRKHATEMATINQRLLEARLVKSRVCPMCQVADRVKYE
F6GWE6______________REMALEEFCTKQTSEIMQLNRLIQQYKHERECNSIIGQTREDKIIRLESLMDGVLPTEEFIEEELVSLTHEHKLLKEKYENHPEVLRTKLELKRVQDELERYRNFFDMGERDVLLEEIQDLRSHLQYYID-SSPMPPRKRSPLLQLTYS-------------CQPSLTPPLFTISESTGES-------AEEKLE----------QERLRWTETESKWISLSEELRDELEASRSLAEKQKVELDSEKKCAEELKEAMQLAMEGHARMLEQYAELEERHMALLARHRKIQEGIDDVKKAAAKAGVKGAESKFINALAAEISALKVEREKERRYLRDENRGLQAQLRDTAEAVQAAGELLVRLKEAEEAVATAQKQAMEAEQETEKAYKQIEKLKKKHEKEISTLNQFLAESRLPKKALTPTYDDSEMAKYD

SNPs (tot: 17)

Position	A %	C %	G %	T %	Probability
353			83	16	0.994512
354	83		16		0.994512
355			83	16	0.994512
408	50		50		1.0
424	85			14	0.993533
427			14	85	0.993533
428	14			85	0.993533
430	85	14			0.993533
434	85		14		0.993533
437		85		14	0.993533
438		85	14		0.993533
439		85		14	0.993533
442	85	14			0.993533
445	14	85			0.993533
491	14			85	0.993533
494			14	85	0.993533
531		85		14	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain