SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3105

Length: 2428 nt

UniGene Fasta

>sp_v3.0_unigene3105
TGAAGAGAGATTGAAAGCAGTCTTGAAAGAAGTGACAGCATCAAATGGACAGATCATTCTCTTTATCGATGAGATACATACAGTTGTTGGGGCAGGTGCTACGAGTGGAGCTATGGATGCAGGCAACTTGTTAAAACCTATGCTTGGACGAGGCGAGCTACGTTGTATTGGAGCAACGACACTCAATGAATACCGCAAATACATTGAAAAGGATGCTGCTCTGGAACGCAGATTTCAGCAAGTATATGTGGGTCAGCCATCAGTGGAAGATAGTATATCTATTCTTCGTGGATTGCGTGAACGCTATGAATTGCACCATGGAGTTAGAATATCTGATGGTGCACTAGTTGCAGCTGCTGTTCTTTCAGACAGATATATTACTGGGCGCTTTCTACCTGACAAAGCAATTGATCTTGTTGATGAAGCTGCTGCAAAATTGAAAATGGAAATGACATCGAAGCCTACCGAATTGGATGAAGTGGATAGGGCTGTGCTGAAGTTGGAGATGGAACGTCTTTCTTTGAAAAATGATACGGATAAAGCATCCAAAGAACGTCTTAATAAGCTGGAAGCTGATTTAGAGGCACTAAAACAAAAGCAAAAAGAGCTTACGGATGAATGGGAGCAGGAGAAGACACTTATGACTCGCATTCAGTCAATCAAAGAGGAGGTGGACAGGGTGAATTTAGAGATGCAGGCAGCTGAACGTGAGTATGATCTAAATCGGGCAGCTGAACTGAAGTATGGGACATTGATATCTCTTCAACGACAATTGGAAGAAGCTGAAAAGAAACTTGCTGAGTATCGGGAAATTGGTAAGTCGATGCTTCGGGAGGAAGTTACAGAAATTGATATTGCAGAGATTGTGAGTAAGTGGACTGGTATTCCGGTTTCAAATCTGCAGCAGTCAGAGAGGGAGAAGCTTGTCTTCTTAGAAGAAGAGCTCCACAAGAGAGTTGTGGGTCAGGATATTGCAGTGAAGTCTGTTGCTGATGCAATTCGAAGATCAAGAGCAGGACTTTCTGACCCTAACCGCCCAATCGCTAGTTTCATGTTTATGGGTCCAACTGGAGTAGGAAAAACTGAACTGGCAAAAGCTCTTGCAAGCTATCTTTTTAATACGGAACATGCACTTGTAAGGATTGACATGAGTGAATACATGGAAAAGCATGCTGTATCTCGTCTAGTTGGAGCTCCTCCTGGGTATGTTGGCTATGAAGAGGGTGGACAGCTAACAGAGACTGTCCGTCGGAGACCATATTCAGTGGTATTATTTGATGAGATTGAGAAAGCCCATACTGATGTGTTCAATATCCTTCTCCAGTTGTTAGATGATGGAAGGATAACTGATTCACAAGGGCGTCTGGTTAGCTTTACAAATTGTGTTGTCATTATGACATCAAATATCGGATCCCAATACATTTTGGAGACGCTTCAAAACACGCAAGATTCTAAAGAGGCAGTTTATGAATTAATGAAAACACGAGTGATGGAGGTTGCACGACAAACTTTTCGTCCGGAGTTTATGAATCGAGTTGATGAGTATATTGTATTCCAGCCTTTAGACTCACGTCAAATTACTCGTATAGTTGAGCTACAGCTGAAGCGTGTCCAAGATAGACTAAAACAGAAGAAGATCAATCTTAAATTCACTCAGGATGCCGTTACTGTGCTTGGTAACTTTGGCTTTGATCCCAACTTTGGTGCAAGGCCAGTGAAGAGGGTGATACAGCAGATGGTTGAGAATGAACTCGCGTTAGGCTTCCTTAAAGGAGATTTCAAGGAAGACGACACAGTTTTAGTTGATGCTGAGATCACAGCATTGTCAAAAGATCATATTCAGAAGAGATTGGTCATCAAGAGAATTGACGGTTCTGATGTCCAGTCTGAAAACGAAGTTTTGGTTGCAAGCCATTAGTTTAATGGTAACCAAAGGTTGATTTGAGCATAGCCATTAGTTTAATCGTAACCACAGGTTGATTTGAACATACATTGGGAAGAGCGAGGAATAGATGCGCTTCTTGTAGATGGTTGGGTTTTATAGGGAGTATAAAACACACACACATATATATATACTTCACGGGGCTAGTCTGTATAGTTAGTGTGTTTTTCTTGTTGCTAGACTTCTGAAGTTCGGGAATTAAACATCATGTTCAATGCATATTTTACCAAGAAGGGTGGCAAGAGGGTTGTCACAAAGTGAGAGCGGTTTGACCTGTGTAGCACCTTATATTGAAGCTTCTGTTATTCCTTTAAAGTATGCCCTGCAAAGTTATCTATGTTTGCAATTTCTGTAAAAAACTTATGTTGCTGGTATGTTTACCTCATTCCAATTTGTGAGTCTTATGTTTACCTCTTGTATATTGTTCATCTTTGCATTCGTTTTGAATTTCAGAGTGCAATGTCAACGGTGCAATGCCTTAAATTA

Ace file of the UniGene sp_v3.0_unigene3105

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Chaperone clpb, putative n=1 Tax=Ricinus communis RepID=B9RNX1_RICCO	-	-	0.0	82%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	71%
Sma3	Heat shock protein 101	-	-	7.714e-16	-

Source	Gene names
Sma3	AT4g14670; At1g74310; At2g25030; At2g25140; At3g48870; At5g15450; At5g50920; At5g51070; AtclpC; CD4A; CD4B; CHLREDRAFT_107731; CHLREDRAFT_172454; CHLREDRAFT_195417; CHLREDRAFT_195422; CHLREDRAFT_195423; CHLREDRAFT_195426; CLP2; CLPA; CLPB1; CLPB2; CLPB3;

Source	GOs	Term	Type	Identity
Sma3	cell wall	GO:0005618	Cellular Component	-
Sma3	mitochondrion	GO:0005739	Cellular Component	-
Sma3	chloroplast	GO:0009507	Cellular Component	-
Sma3	chloroplast thylakoid membrane	GO:0009535	Cellular Component	-
Sma3	chloroplast stroma	GO:0009570	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	Tic complex	GO:0031897	Cellular Component	-
Sma3	DNA binding	GO:0003677	Molecular Function	-
Sma3	ATP-dependent peptidase activity	GO:0004176	Molecular Function	-
Sma3	nuclease activity	GO:0004518	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	peptidase activity	GO:0008233	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	nucleotide-excision repair	GO:0006289	Biological Process	-
Sma3	response to stress	GO:0006950	Biological Process	-
Sma3	response to heat	GO:0009408	Biological Process	-
Sma3	response to high light intensity	GO:0009644	Biological Process	-
Sma3	chloroplast organization	GO:0009658	Biological Process	-
Sma3	regulation of chlorophyll biosynthetic process	GO:0010380	Biological Process	-
Sma3	protein metabolic process	GO:0019538	Biological Process	-
Sma3	response to hydrogen peroxide	GO:0042542	Biological Process	-
Sma3	protein unfolding	GO:0043335	Biological Process	-
Sma3	protein import into chloroplast stroma	GO:0045037	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	GPCR, rhodopsin-like, 7TM	IPR000276	-	-
Sma3	Chaperonin ClpA/B	IPR001270	-	-
Sma3	UVR domain	IPR001943	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	Clp, N-terminal	IPR004176	-	-
Sma3	TonB box, conserved site	IPR010916	-	-
Sma3	ATPase, AAA-2	IPR013093	-	-
Sma3	Chaperonin ClpB	IPR017730	-	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	-
Sma3	Chaperonin ClpA/B, conserved site	IPR018368	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G25140.1	HSP98.7, CLPB-M, CLPB4 casein lytic proteinase B4 chr2:10697877-10701998 REVERSE LENGTH=964	80%
RefSeq	Arabidopsis thaliana	NP_565586.1	casein lytic proteinase B4 [Arabidopsis thaliana]	80%
RefSeq	Populus trichocarpa	XP_002308700.1	predicted protein, partial [Populus trichocarpa]	82%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: D5A8K5

Fln msg: your sequence is longer than subject: 602 - 292

Fln protein: MDAGNLLKPMLGRGELRCIGATTLNEYRKYIEKDAALERRFQQVYVGQPSVEDSISILRGLRERYELHHGVRISDGALVAAAVLSDRYITGRFLPDKAIDLVDEAAAKLKMEMTSKPTELDEVDRAVLKLEMERLSLKNDTDKASKERLNKLEADLEALKQKQKELTDEWEQEKTLMTRIQSIKEEVDRVNLEMQAAEREYDLNRAAELKYGTLISLQRQLEEAEKKLAEYREIGKSMLREEVTEIDIAEIVSKWTGIPVSNLQQSEREKLVFLEEELHKRVVGQDIAVKSVADAIRRSRAGLSDPNRPIASFMFMGPTGVGKTELAKALASYLFNTEHALVRIDMSEYMEKHAVSRLVGAPPGYVGYEEGGQLTETVRRRPYSVVLFDEIEKAHTDVFNILLQLLDDGRITDSQGRLVSFTNCVVIMTSNIGSQYILETLQNTQDSKEAVYELMKTRVMEVARQTFRPEFMNRVDEYIVFQPLDSRQITRIVELQLKRVQDRLKQKKINLKFTQDAVTVLGNFGFDPNFGARPVKRVIQQMVENELALGFLKGDFKEDDTVLVDAEITALSKDHIQKRLVIKRIDGSDVQSENEVLVASH*

Protein Length: 603

Fln nts: TGAAGAGAGATTGAAAGCAGTCTTGAAAGAAGTGACAGCATCAAATGGACAGATCATTCTCTTTATCGATGAGATACATACAGTTGTTGGGGCAGGTGCTACGAGTGGAGCT_-_ATGGATGCAGGCAACTTGTTAAAACCTATGCTTGGACGAGGCGAGCTACGTTGTATTGGAGCAACGACACTCAATGAATACCGCAAATACATTGAAAAGGATGCTGCTCTGGAACGCAGATTTCAGCAAGTATATGTGGGTCAGCCATCAGTGGAAGATAGTATATCTATTCTTCGTGGATTGCGTGAACGCTATGAATTGCACCATGGAGTTAGAATATCTGATGGTGCACTAGTTGCAGCTGCTGTTCTTTCAGACAGATATATTACTGGGCGCTTTCTACCTGACAAAGCAATTGATCTTGTTGATGAAGCTGCTGCAAAATTGAAAATGGAAATGACATCGAAGCCTACCGAATTGGATGAAGTGGATAGGGCTGTGCTGAAGTTGGAGATGGAACGTCTTTCTTTGAAAAATGATACGGATAAAGCATCCAAAGAACGTCTTAATAAGCTGGAAGCTGATTTAGAGGCACTAAAACAAAAGCAAAAAGAGCTTACGGATGAATGGGAGCAGGAGAAGACACTTATGACTCGCATTCAGTCAATCAAAGAGGAGGTGGACAGGGTGAATTTAGAGATGCAGGCAGCTGAACGTGAGTATGATCTAAATCGGGCAGCTGAACTGAAGTATGGGACATTGATATCTCTTCAACGACAATTGGAAGAAGCTGAAAAGAAACTTGCTGAGTATCGGGAAATTGGTAAGTCGATGCTTCGGGAGGAAGTTACAGAAATTGATATTGCAGAGATTGTGAGTAAGTGGACTGGTATTCCGGTTTCAAATCTGCAGCAGTCAGAGAGGGAGAAGCTTGTCTTCTTAGAAGAAGAGCTCCACAAGAGAGTTGTGGGTCAGGATATTGCAGTGAAGTCTGTTGCTGATGCAATTCGAAGATCAAGAGCAGGACTTTCTGACCCTAACCGCCCAATCGCTAGTTTCATGTTTATGGGTCCAACTGGAGTAGGAAAAACTGAACTGGCAAAAGCTCTTGCAAGCTATCTTTTTAATACGGAACATGCACTTGTAAGGATTGACATGAGTGAATACATGGAAAAGCATGCTGTATCTCGTCTAGTTGGAGCTCCTCCTGGGTATGTTGGCTATGAAGAGGGTGGACAGCTAACAGAGACTGTCCGTCGGAGACCATATTCAGTGGTATTATTTGATGAGATTGAGAAAGCCCATACTGATGTGTTCAATATCCTTCTCCAGTTGTTAGATGATGGAAGGATAACTGATTCACAAGGGCGTCTGGTTAGCTTTACAAATTGTGTTGTCATTATGACATCAAATATCGGATCCCAATACATTTTGGAGACGCTTCAAAACACGCAAGATTCTAAAGAGGCAGTTTATGAATTAATGAAAACACGAGTGATGGAGGTTGCACGACAAACTTTTCGTCCGGAGTTTATGAATCGAGTTGATGAGTATATTGTATTCCAGCCTTTAGACTCACGTCAAATTACTCGTATAGTTGAGCTACAGCTGAAGCGTGTCCAAGATAGACTAAAACAGAAGAAGATCAATCTTAAATTCACTCAGGATGCCGTTACTGTGCTTGGTAACTTTGGCTTTGATCCCAACTTTGGTGCAAGGCCAGTGAAGAGGGTGATACAGCAGATGGTTGAGAATGAACTCGCGTTAGGCTTCCTTAAAGGAGATTTCAAGGAAGACGACACAGTTTTAGTTGATGCTGAGATCACAGCATTGTCAAAAGATCATATTCAGAAGAGATTGGTCATCAAGAGAATTGACGGTTCTGATGTCCAGTCTGAAAACGAAGTTTTGGTTGCAAGCCATTAG___TTTAATGGTAACCAAAGGTTGATTTGAGCATAGCCATTAGTTTAATCGTAACCACAGGTTGATTTGAACATACATTGGGAAGAGCGAGGAATAGATGCGCTTCTTGTAGATGGTTGGGTTTTATAGGGAGTATAAAACACACACACATATATATATACTTCACGGGGCTAGTCTGTATAGTTAGTGTGTTTTTCTTGTTGCTAGACTTCTGAAGTTCGGGAATTAAACATCATGTTCAATGCATATTTTACCAAGAAGGGTGGCAAGAGGGTTGTCACAAAGTGAGAGCGGTTTGACCTGTGTAGCACCTTATATTGAAGCTTCTGTTATTCCTTTAAAGTATGCCCTGCAAAGTTATCTATGTTTGCAATTTCTGTAAAAAACTTATGTTGCTGGTATGTTTACCTCATTCCAATTTGTGAGTCTTATGTTTACCTCTTGTATATTGTTCATCTTTGCATTCGTTTTGAATTTCAGAGTGCAATGTCAACGGTGCAATGCCTTAAATTA

Fln Alignment:

Contig3105___MFMGPTGVGKTELAKALASYLFNTEHALVRIDMSEYMEKHAVSRLVGAPPGYVGYEEGGQLTETVRRRPYSVVLFDEIEKAHTDVFNILLQLLDDGRITDSQGRLVSFTNCVVIMTSNIGSQYILETLQNTQDSKEAVYELMKTRVMEVARQTFRPEFMNRVDEYIVFQPLDSRQITRIVELQLKRVQDRLKQKKINLKFTQDAVTVLGNFGFDPNFGARPVKRVIQQMVENELALGFLKGDFKEDDTVLVDAEITALSKDHI-QKRLVIKRIDGSDVQSENEVLVA
D5A8K5______________MFMGPTGVGKTELAKALASYLFNTDEALVRIDMSEYMEKHAVSRLIGAPPGYVGYEEGGQLTECIRRRPYAVILFDEIEKAHTDAFNILLQILDDGRVTDSQGRTVSFTNTVIIMTSNIGSQYILSRLDDEPGSKEELYERMKNRVMEAAQMTFRPEFMNRIDEYIVFQPLDREQINSIVRLQLDRVQQRLRDRKITLKVTDSGVELLGSMGYDPNYGARPVKRVIQQHVENELAKEILRGDIKEEDTVLVDTEMTTFANGQLPYQKLVFKVFPSKTSADDSNVGVA

SNPs (tot: 36)

Position	A %	C %	G %	T %	Probability
776			25	75	0.996473
818		25		75	0.996473
1252	16		83		0.994512
1253		16		83	0.994512
1254	16	83			0.994512
1255			83	16	0.994512
1256			83	16	0.994512
1279	20			80	0.995493
1280		20		80	0.995493
1281	20		80		0.995493
1282	80			20	0.995493
1436	25		75		0.996473
1853	20		80		0.995493
1861	83		16		0.994512
1864	83		16		0.994512
1865	83			16	0.994512
1868		16	83		0.994512
1869	83	16			0.994512
1874	83		16		0.994512
1876			83	16	0.994512
1879		16		83	0.994512
2020			85	14	0.993533
2082			10	90	0.90298
2085	90		10		0.90298
2086		90		10	0.90298
2088	10		90		0.90298
2089		10	90		0.90298
2093	90			10	0.90298
2095			10	90	0.90298
2101		10		90	0.90298
2102	90			10	0.90298
2103		10	90		0.90298
2104	10			90	0.90298
2124	88	11			0.923564
2154		88		11	0.923564
2271		14		85	0.993533

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain