SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3085

Length: 2515 nt

UniGene Fasta

>sp_v3.0_unigene3085
ATGCAATGAAATCTGATCAAATGGCTTTACCAAAAAAATTAGAAGCCATCCTTCCTGCTGTACCGAATTCAGAGCTCCCATCTGAATTGAGGTGCTCACTGTGTCAAGGAATCTTTCGGGGGGCTGTTATGATACCATGTTGTCAGTTTAGCTTCTGCCATGAGTGTATTAGACAGGTATTGGTTGAGAAGGGTAAATGTCCTCAATGTAATTCTACTAAATTCAAGATTGATGAGCTACTTCCTAATATTGCTCTTCGTCAAGCAATTGAACGCTTTCTCGAGTCTCAAGTGACAATCAGTACTGCAGAAGATTGTGGAGCGAAACATGCACCTGATGGGGAATCTGGAATTCAAGCAAAGGCAGCAGCCTCACAAGCCCTATCTCACAGACAAGGTCTGTCTGAGGTCCGGAAGTCTATTCTTGACAATGGAGAGGGTGTCACGGTCTATAAGGCACTCCAGTCTTTCTCTCATAAAGATGAAGGCATAACTATGGAGTTTCAGGCTAGCAAAGGGAGAAAAAGGAAGAAGTCTTTTCCCCTGTCTGCAACAGGAGATGGAGTTGCAAATTTTATGGCTTCTGGAAAGCTAAAGAAGGGTGGTCGTTGTTGCTATGTCTGTGGTTCTCCAGAGCATCTGGCAAGGGACTGTCCAGATAATTCTGGCACTTATCTTCAGCATGGTATGTTTAATGCAGGTGGACCACTGTATCCTGGAAATATTCCTGCATATGGTCCAAATACATACTGGCATGGAGCATCAATGCCCCATGTCAGGCCCTTTCCTAGTATGTATGGGCCAACTCCTCCACCTTTGCCATTTGAGACTTCAATAATGCCAGTTGCACCATATGCCATTCCTCCATATATGCCATCAATGTATTCAGGTGTGCCTATTCACTGTGGCTTCATGAGAATGGGAAGTGTCGGACCTTCCCTAGTTGCTCCATCTGAAAGGCCTTTAAGCCGAGAAGAATTTATGCAACTTCAGGATCATGAAAGACGGCGCAGATTTATGCAAGAACAACAGGATAGGGAACGAATTCAAGAAAAGTCTAATTCAATGGAAGGTGACTCTCGAGTGCACTGTTTAGAATCTCAGAAGCATTGGTATGATCAGCAGAAGATCTCTGATGATGAGCATCATAATCCTTATGGCACACATGAGCTTGACCGGGATTCTGTTAGAAATTATTCAGATGAAAGTATTCATCAAAAAAGCAGAAGTGGGAAGCTTATGCGAAAGCATTCTCAGGAGAAATATATTGATAGTAATGCATGCCGTAGACAGGATTCTGTTTCAGATGACAGTGATCATCAGAAGGGCAAGAGTGTGAGACATACACAAAAGTATTCTTGGGAAAAATATGTTGATAGCAATGCATGTCAAGGGCAAGATACTGTTTCAAATGAGAGTGATTGTCAGAAGAGAAAAAAACGGCTACATGGAAGATCCCAAGAAAAATATGCTGAAAGTTATGCATGTCGAAGAAAAGAATCTATATGTGAGGATGAAGATGATTTGTCATATGATAAAAGAGGTAATAGTCTGCATTCAGAAAGGTGGCGTCGATACTCTAAGTCCCCGAAGTACAGTGGCAGAAACCATAGTAAGTTTCACCTTGAAGATAGTATAGAAAGATCTAACTCTGAGCTGGAGGGAGATGAACCTTGGGAAACTTGTCACACCATGCATGGAGATTTAGCATATTTAAAATCTAGCAAACAGAGTGTTTCAAAAAAGTCCAGTGACAGAAAGATTATTTACAGGAAATCTGGAAGCCCATGCAATAGTCACCTAAGTCGTTATAGAAGCAAAGTAGATGCTTCTGAAGATCTAAAATGGACATCTTATAATAAAAATGACACCAAGAAGCGTGGATACCCCTTCAGAGTATGCTGGAGAGGATGACGCAAATTCATTATGCAGGTACGACTCTGCTGAAGAAGAGAACATAGAGAGAAAGGTTCAACATGAAACGCATAGAAGCAATCATCGGAAGAAATGGAGGCATTCAACAGGTGAGTATGACCTTTATTTTTCCAGCGAGGATTCTAAAAGAAGAAAGAAAAGCAGGAATGATCAAAGAAATAGCCTAGATAAAACTAGAGATACTGAGACCAATGTTATAGATGAATCTGAGCTGCATACCTCTAGGCATCGTAAGCACAAATCCAAGAGTCATTCTAAGTCGACTACTTCTGTATTGGCCCCTATAGAGGAAACTAGATGGCAAATGGATGCAGGTTTTGATACTGACAATGAAGATGTGTATTATATGTATCATACAAGGGATAAGCATGATCATTCGCGCAAAAAGAAGGAAAACTGATGTGTGCTCTTATTTTCTCTCTCTTTTTTTTTCTTTATTTGTGGGTTATTTGCCAATGCAAGTTTGTTTAAGTGTAATTTATAGTCATTTATCGTCATTCTGATGTGAAATTAGAAGAGTTGCTGTCAGTTTTCATCACAAATCTTTTGAATTAACTCTTTGGAATTCTGTTTAATTTCAC

Ace file of the UniGene sp_v3.0_unigene3085

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	DWNN domain, a CCHC-type zinc finger [Arabidopsis thaliana] gb\|AED95509.1\| DWNN domain, a CCHC-type zinc finger [Arabidopsis thaliana]	-	-	3.0e-13	24%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	28%

Source	Gene names
Sma3	PHYPADRAFT_80115;

Source	GOs	Term	Type	Identity
Sma3	ubiquitin ligase complex	GO:0000151	Cellular Component	-
Sma3	ubiquitin-protein ligase activity	GO:0004842	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	zinc ion binding	GO:0008270	Molecular Function	-
Sma3	protein ubiquitination	GO:0016567	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Zinc finger, RING-type	IPR001841	-	0.0	-
Sma3	U box domain	IPR003613	-	0.0	-

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: D7STW2

Fln msg: your sequence is shorter than subject: 637 - 795

Fln protein: AMKSDQMALPKKLEAILPAVPNSELPSELRCSLCQGIFRGAVMIPCCQFSFCHECIRQVLVEKGKCPQCNSTKFKIDELLPNIALRQAIERFLESQVTISTAEDCGAKHAPDGESGIQAKAAASQALSHRQGLSEVRKSILDNGEGVTVYKALQSFSHKDEGITMEFQASKGRKRKKSFPLSATGDGVANFMASGKLKKGGRCCYVCGSPEHLARDCPDNSGTYLQHGMFNAGGPLYPGNIPAYGPNTYWHGASMPHVRPFPSMYGPTPPPLPFETSIMPVAPYAIPPYMPSMYSGVPIHCGFMRMGSVGPSLVAPSERPLSREEFMQLQDHERRRRFMQEQQDRERIQEKSNSMEGDSRVHCLESQKHWYDQQKISDDEHHNPYGTHELDRDSVRNYSDESIHQKSRSGKLMRKHSQEKYIDSNACRRQDSVSDDSDHQKGKSVRHTQKYSWEKYVDSNACQGQDTVSNESDCQKRKKRLHGRSQEKYAESYACRRKESICEDEDDLSYDKRGNSLHSERWRRYSKSPKYSGRNHSKFHLEDSIERSNSELEGDEPWETCHTMHGDLAYLKSSKQSVSKKSSDRKIIYRKSGSPCNSHLSRYRSKVDASEDLKWTSYNKNDTKKRGYPFRVCWRG*

Protein Length: 638

Fln nts: ATGCAATGAAATCTGATCAAATGGCTTTACCAAAAAAATTAGAAGCCATCCTTCCTGCTGTACCGAATTCAGAGCTCCCATCTGAATTGAGGTGCTCACTGTGTCAAGGAATCTTTCGGGGGGCTGTTATGATACCATGTTGTCAGTTTAGCTTCTGCCATGAGTGTATTAGACAGGTATTGGTTGAGAAGGGTAAATGTCCTCAATGTAATTCTACTAAATTCAAGATTGATGAGCTACTTCCTAATATTGCTCTTCGTCAAGCAATTGAACGCTTTCTCGAGTCTCAAGTGACAATCAGTACTGCAGAAGATTGTGGAGCGAAACATGCACCTGATGGGGAATCTGGAATTCAAGCAAAGGCAGCAGCCTCACAAGCCCTATCTCACAGACAAGGTCTGTCTGAGGTCCGGAAGTCTATTCTTGACAATGGAGAGGGTGTCACGGTCTATAAGGCACTCCAGTCTTTCTCTCATAAAGATGAAGGCATAACTATGGAGTTTCAGGCTAGCAAAGGGAGAAAAAGGAAGAAGTCTTTTCCCCTGTCTGCAACAGGAGATGGAGTTGCAAATTTTATGGCTTCTGGAAAGCTAAAGAAGGGTGGTCGTTGTTGCTATGTCTGTGGTTCTCCAGAGCATCTGGCAAGGGACTGTCCAGATAATTCTGGCACTTATCTTCAGCATGGTATGTTTAATGCAGGTGGACCACTGTATCCTGGAAATATTCCTGCATATGGTCCAAATACATACTGGCATGGAGCATCAATGCCCCATGTCAGGCCCTTTCCTAGTATGTATGGGCCAACTCCTCCACCTTTGCCATTTGAGACTTCAATAATGCCAGTTGCACCATATGCCATTCCTCCATATATGCCATCAATGTATTCAGGTGTGCCTATTCACTGTGGCTTCATGAGAATGGGAAGTGTCGGACCTTCCCTAGTTGCTCCATCTGAAAGGCCTTTAAGCCGAGAAGAATTTATGCAACTTCAGGATCATGAAAGACGGCGCAGATTTATGCAAGAACAACAGGATAGGGAACGAATTCAAGAAAAGTCTAATTCAATGGAAGGTGACTCTCGAGTGCACTGTTTAGAATCTCAGAAGCATTGGTATGATCAGCAGAAGATCTCTGATGATGAGCATCATAATCCTTATGGCACACATGAGCTTGACCGGGATTCTGTTAGAAATTATTCAGATGAAAGTATTCATCAAAAAAGCAGAAGTGGGAAGCTTATGCGAAAGCATTCTCAGGAGAAATATATTGATAGTAATGCATGCCGTAGACAGGATTCTGTTTCAGATGACAGTGATCATCAGAAGGGCAAGAGTGTGAGACATACACAAAAGTATTCTTGGGAAAAATATGTTGATAGCAATGCATGTCAAGGGCAAGATACTGTTTCAAATGAGAGTGATTGTCAGAAGAGAAAAAAACGGCTACATGGAAGATCCCAAGAAAAATATGCTGAAAGTTATGCATGTCGAAGAAAAGAATCTATATGTGAGGATGAAGATGATTTGTCATATGATAAAAGAGGTAATAGTCTGCATTCAGAAAGGTGGCGTCGATACTCTAAGTCCCCGAAGTACAGTGGCAGAAACCATAGTAAGTTTCACCTTGAAGATAGTATAGAAAGATCTAACTCTGAGCTGGAGGGAGATGAACCTTGGGAAACTTGTCACACCATGCATGGAGATTTAGCATATTTAAAATCTAGCAAACAGAGTGTTTCAAAAAAGTCCAGTGACAGAAAGATTATTTACAGGAAATCTGGAAGCCCATGCAATAGTCACCTAAGTCGTTATAGAAGCAAAGTAGATGCTTCTGAAGATCTAAAATGGACATCTTATAATAAAAATGACACCAAGAAGCGTGGATACCCCTTCAGAGTATGCTGGAGAGGATGA___CGCAAATTCATTATGCAGGTACGACTCTGCTGAAGAAGAGAACATAGAGAGAAAGGTTCAACATGAAACGCATAGAAGCAATCATCGGAAGAAATGGAGGCATTCAACAGGTGAGTATGACCTTTATTTTTCCAGCGAGGATTCTAAAAGAAGAAAGAAAAGCAGGAATGATCAAAGAAATAGCCTAGATAAAACTAGAGATACTGAGACCAATGTTATAGATGAATCTGAGCTGCATACCTCTAGGCATCGTAAGCACAAATCCAAGAGTCATTCTAAGTCGACTACTTCTGTATTGGCCCCTATAGAGGAAACTAGATGGCAAATGGATGCAGGTTTTGATACTGACAATGAAGATGTGTATTATATGTATCATACAAGGGATAAGCATGATCATTCGCGCAAAAAGAAGGAAAACTGATGTGTGCTCTTATTTTCTCTCTCTTTTTTTTTCTTTATTTGTGGGTTATTTGCCAATGCAAGTTTGTTTAAGTGTAATTTATAGTCATTTATCGTCATTCTGATGTGAAATTAGAAGAGTTGCTGTCAGTTTTCATCACAAATCTTTTGAATTAACTCTTTGGAATTCTGTTTAATTTCAC

Fln Alignment:

Contig3085___DQMALPKKLEAILPAVPNSELPSELRCSLCQGIFRGAVMIPCCQFSFCHECIRQVLVEKGKCPQCNSTKFKIDELLPNIALRQAIERFLESQVTISTAEDCGAKHAPD--------------------------------GESGIQAKAAASQALSHRQGLSEVRKSILDNGEGVTVYKALQSFSHKD--------EGITMEFQASKGR---------KRKKSFPLSATGDGVANFMASGKLKKGGRCCYVCGSPEHLARDCPDNSGTYLQHGMFNAGGPLYPGNIPAYGPNTYWHGASMPHVRPFPSMYGPTPPPLPFETSIMPVAPYAIPPYMPSMYSGVPIHCGFMRMGSVGPSLVAPSERPLSREEFMQLQDHERRRRFMQEQQDRERIQEKSNSMEGDSRVHCLESQKHWYDQQKISDDEHHNPY-----GTHELDRDSVRNYSDESIHQKSRSGKLMRKHSQEKYIDSNACRRQDSVSDDSDHQKGKSVRHTQKYSWEKYVDSNA-CQGQDTVS---------NESDCQKRKKRLHGRSQEKYAESYACRRKESICEDED--DLSYDKR-----GNSLHSERWR
D7STW2______________EQTKLEKVAHANPQAIQNVDLPSEMKCSLCNTYFKKAVMIPCCQHSFCEKCIHLVLVEKAQCPKCSSTKCRVEDLLPNLSLRQAIDHFLESQILLSGSDDAFHRYAPDGESGIQANDFSFAGTILQKDLDLPHSPSATGKGSNYIMTESAYDSTSRNNASMGIGGSHRFDSAAGKSLKSAPLSQKIKQIVGENDDFQGENIPTNLCKSRVPEEADSTLKKKKELWVNASGGGQSVIPNNGRNKKGDRACYTCGSPDHLMRDCP----TALSQNAMLQTGAMFPGVMPGLSP--YWNGTPSPYGRSSVNMYG-NPGMMAFNATMVPVTPFAVPAYVPSMYCGLPVNGGYMGMGGLAPPVGTSAERPLSHPEFSELHDCRKKQKLLNRNMTRDEDEDLNKWYRYNDAERSHGHKPHIEREKSISDSEDSSTQRLKRKNRHDKRFDDDIHYGDER-HEKS-SRPIVGRDRKPYHTERSSLEIDDMPYSSSWHSEDRHKNHHE--SSKKHNDQRGQCSNDSSRSRHHTKHQKDDERNIKKQSEKHYSHSQSGSEQGLATQQIKQVKERDSRHGLGHDRHNAKSMNNDNEHDRWQ

SNPs (tot: 12)

Position	A %	C %	G %	T %	Probability
1381	66		33		0.997452
1443			75	25	0.996473
1445		75	25		0.996473
1571		42		57	1.0
1904	33	66			0.997452
1908	66		33		0.997452
1939	33		66		1.0
1982	75		25		0.996473
1983	75		25		0.996473
2027	16		83		0.994512
2032			16	83	0.994512
2124		16	83		0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain