SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3079

Length: 3805 nt

UniGene Fasta

>sp_v3.0_unigene3079
GGCATTGAACGGTAGGTATAGCTGTGACACTTTCCTTACTTTTTCCCTTAGAGCTGATCACGATTTGTGCATGGTTTTATTGTGAGGTCCCACAGGCAATAGATCTTTCATGGTTTTCGCTTACGTATGAACAGCAGAAGAATCGCTGTAATTGGAGTGGAGTATTATTTTATATAAATAGACATGTAGGATAAATCAATATTCCAAGATGAACGGCCGTGACCACGATGAAAATCCAGAGTGCAGGAACAAATAAGTGAGTCCATTAGGCTCAGGACCAGTGTTGTGCTAGAGCGCCTCAAGGATGCTGACGAGGGTTACCAATATGGAGCATGTCCAGTGTTCGATCGCCAATATCAGATCGTCTATGTTGGTCAGTGGACACCGGATGCTCACACGAAGCACGGCGCGCGAGTTTTGCTTCCCGACAAAAGCTCCGGGCAGGCAATCGAGCTGCTGGAACGATGGTAGTTGTAGAAGGAGAATCGGTCCAATTTGTGCTGTTATCAGTGATAAACCCGCGACGACGACCGCCGTGACGCCTTCTGTTGACAAGGGTGCGATGATCAATGTGAAGGCCGTGGCCACAATCAGAAAGAAACTCAAGGAGCGCATGAAGGACAAGATCGAGAATCAATGGGTGTCTCTGTTAGATGTCATTGGCCAGAACGTCCTTCTGGAACTAGTCAGTGTTGACATCGATCCAGAGTCAACTAGTGGCAAGAGAAGCAAAGAATCTGCTTTGAAGGGCTGGCTGCTGCAGACTGCCCGTGAAGATAACATAATGGAATGCACTGCAAATTTTACAGTAAGCGCTGACTTTGGTTGGCCGGGAGCTATTTTAGTTACCAATCATCACGACAAAGAAATCTTTTTAGAATCCATTGTAGTGGAAGGGTTCGACAGCGAGCCGATCTACTTCCCCTGCCACTCTTGGGTTCATTCAAAGAAGGATAATCCCGAGAAAAGAATCTTCTTCAGCAATCAGCCATATTTGCCTTCAAAAACCCCTGATGGGCTAGAGGATCTTCGGCAGAAGGACCTGACAGACAAGCGTGGGGATGGCAAAGGTGAACGTAAGCAGTGGGATAGAATTTATGACTATGCGACTTACAATGATTTAGGGAACGCTGATAAAAGTGAGGATCTTGCAAGACCGATTCTTGGTGACGGTGATATAAAATATCCAAGACGCTGTCGCACTGGCCGTCCTCCTATGAAGACAGATCCATCTGCAGAAAGCAGACAAGAAAATCGTAGTACTGTATATGTTCCACGGGATGAAGCATTCGAGGAGATCAAGAAAAGTACATTTTCTGCAGGAGCACTAAAAGGATTATTGCATAACTTGGTACCATCTTTGATAGCTAGTTTCTCGAATCCCAATTATGAGTTTGGGTGCTTTTCTGATATTGATCGTCTGTATAGAGAGGGCCAGATTTTAAAGATTGAGCCACATCAACATGATATTTTTAAAAATCTGATGTTGCCAAAGATAATGAATAACGTGCTAAAAACTGGTGAAGAGCTATTACGATATGAAATCCCAGGCATAATCTCAAGGGATAGATTTGCATGGTTACGTGACAATGAGTTTGGCCGCCAAACATTGGCTGGGGTGAACCCTGTTAATATTGAACGGTTAAAGGACTTTCCCATTCTCAGCAAACTGGATCCGGCAATATATGGTTCACCGGAGTCTGCAATCAAATCTGAACATGTTGAAGGAGAACTAAATGGAATGTCTGTTAAGCAGGCACTTGAAGAGGAAAGATTGTTCATCTTGGACTACTATGATGCATATATGCCGTTTGTCACCAAGATAAATTCTCTGAAGGGGAGAAAGGTTTATGCTTCAAGAACAATATTCTTTTTAACAGCACGTGGCACTCTTAAGCCTATAGTTATTGAGCTCAGTCTTCCACCAACCGTTACTGGAGCTGAATCCAAACAAATTTTCACTCATGGCCATGATGCAACTTCGTACTGGCTTTGGAAATTAGCGAAATCTCATGTGTGCTCCAATGATGCTGGTTTTCACCAGCTCGTCAATCACTGGCTACGGACACATGCTTGCATGGAGCCCTATATTATTGCAGCTAACAGGCAGCTGAGCTGTATGCATCCCATCTTCAAGCTGTTGCAACCACATTTGCGTTACACTATGGAAATTAATGCATTGGCTCGCCAGAGCTTGATAAATGGAGGAGGAGTTATTGAATCTTGCTTTACACCAGACAAGTATTCCATGGAGTTAAGTGCATCTGCATATGACAGAGCATGGCGCTTTGACAGGGAGGCCTTGCCTGCAGACTTGCTTGCAAGGGGCATGGCAGTAGAGGATCCGAGTCAACCCCATGGTCTAAGACTTGTAATTGAAGATTACCCATATGCTGCCGATGGTCTTCTTATTTGGTCTGCCATAAAAGAATGGGTGGAAGATTATGTTTCCATCTATTACTCCGATTCCAACAGTGTGCAAACTGATACTGAACTTCAAGCATGGTGGGATGAAACAATAAACAAAGGGCATTACGATAAAAAAAATGCATCTTGGTGGCCAAAGTTGGAAACAAAGGAAGATCTAGCAGGGATTTTAACTACAATAATCTGGGTAGCATCAGGGCAGCATGCTGCTTTGAATTTTGGACAATACCCATATGGAGGGTATGTACCCAACAGACCCTGTATTATGAGAAAGTTGATCCCCAATGAAACAGATCCAGAGTATAAAAGCTTTCTATTAAATCCACAGAATTTCTTCCTATCATCAATGCCAACTCAGCTCCAAGCCACCAAAACCATGGCTGTCGTGGACACTCTCTCAACGCATTCACCAGACGAAGAATACTTGGGCGAGAGACATGAGACTAAGTGGACTAATGATGGAAGAGCACTGGAGGCCTTTCAAAGGTTTTCTACCACAGTTCAGGGGGTAGAGGAAATCATACATCAGAGAAATGAAGATTCGAGTAAGAAGAACAGGAATGGGGCCGGCGTACTTCCTTACGAGTTATTGCTGCCAACATCAGGTCCAGGCGTAACTGGTCGTGGTATCCCCAACAGTATTTCAATTTAGCTATCAGGATGAAAGTCCAGTTGTTCCCTATTTTGGGTTTCAGAACTTGTTATGCTTTGACTTCAGCATGATGCTATATATGCATATATGTCTAAACCAATTCTTCTCTCCAAGCTCGGAAAAAATATTAGATCAAGCCTTGCCACTTTTGTCTTCATTAGCAGCAGCAGTAGCCCGGTTTGAAACAATACATGGTAGTTGACTGGCGCCTTTCAAAGCTACTCACCTGTCCAGTCACTCGCAGAGTACATATCCAAGTTGTCATTGGGGTTGTGGATGCGTCGTCTGGATTATCATTCCAAATTCCTATTAATGTTTGACAACGTTTGTTCTTCTTGTGTTGGCCAGCTTCGTTGGTGTTGCCTAACAGCTTTGGCTTTCTACTGCTTTACTTCGACATCTAGTGCATATGCGTTTTCAGGAGGTTTAATAGGTAGGAAATTGAGTCAAATCTGCATATATGTACCTATGTAAAACTAATTTATACATCAAGGTCACACAAAATTCAAGTGGAGGCTCATCGTGTGAAATTGAAATTAAGAATTGCGCTCTAATATCATGTAGCGAAGATTTTGTGCAAGTATTGCATTTGCATATGCCTGTCTTCAAAGTATTCAATAAGGTTGAATGATAGCCTATTTCTTTAGAGTCATCTCGACTTATCGTGTTTGTCTGAAAGTTTCTTTGAACTCATCCCAATTTTGTCATAGGTATTTGAAAGTTTCT

Ace file of the UniGene sp_v3.0_unigene3079

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Lipoxygenase n=1 Tax=Picea sitchensis RepID=C0PT31_PICSI	-	-	90%
FL-Next	sp=Lipoxygenase; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	90%
Sma3	Putative uncharacterized protein	-	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G72520.1	LOX4 PLAT/LH2 domain-containing lipoxygenase family protein chr1:27308611-27312589 FORWARD LENGTH=926	58%
RefSeq	Arabidopsis thaliana	NP_177396.1	lipoxygenase 4 [Arabidopsis thaliana]	58%
RefSeq	Populus trichocarpa	XP_002311724.1	predicted protein [Populus trichocarpa]	61%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: coniferopsida.fasta

Fln subject: C0PT31

Fln msg:

Fln protein: MLTRVTNMEHVQCSIANIRSSMLVSGHRMLTRSTAREFCFPTKAPGRQSSCWNDGSCRRRIGPICAVISDKPATTTAVTPSVDKGAMINVKAVATIRKKLKERMKDKIENQWVSLLDVIGQNVLLELVSVDIDPESTSGKRSKESALKGWLLQTAREDNIMECTANFTVSADFGWPGAILVTNHHDKEIFLESIVVEGFDSEPIYFPCHSWVHSKKDNPEKRIFFSNQPYLPSKTPDGLEDLRQKDLTDKRGDGKGERKQWDRIYDYATYNDLGNADKSEDLARPILGDGDIKYPRRCRTGRPPMKTDPSAESRQENRSTVYVPRDEAFEEIKKSTFSAGALKGLLHNLVPSLIASFSNPNYEFGCFSDIDRLYREGQILKIEPHQHDIFKNLMLPKIMNNVLKTGEELLRYEIPGIISRDRFAWLRDNEFGRQTLAGVNPVNIERLKDFPILSKLDPAIYGSPESAIKSEHVEGELNGMSVKQALEEERLFILDYYDAYMPFVTKINSLKGRKVYASRTIFFLTARGTLKPIVIELSLPPTVTGAESKQIFTHGHDATSYWLWKLAKSHVCSNDAGFHQLVNHWLRTHACMEPYIIAANRQLSCMHPIFKLLQPHLRYTMEINALARQSLINGGGVIESCFTPDKYSMELSASAYDRAWRFDREALPADLLARGMAVEDPSQPHGLRLVIEDYPYAADGLLIWSAIKEWVEDYVSIYYSDSNSVQTDTELQAWWDETINKGHYDKKNASWWPKLETKEDLAGILTTIIWVASGQHAALNFGQYPYGGYVPNRPCIMRKLIPNETDPEYKSFLLNPQNFFLSSMPTQLQATKTMAVVDTLSTHSPDEEYLGERHETKWTNDGRALEAFQRFSTTVQGVEEIIHQRNEDSSKKNRNGAGVLPYELLLPTSGPGVTGRGIPNSISI*

Protein Length: 926

Fln nts: GGCATTGAACGGTAGGTATAGCTGTGACACTTTCCTTACTTTTTCCCTTAGAGCTGATCACGATTTGTGCATGGTTTTATTGTGAGGTCCCACAGGCAATAGATCTTTCATGGTTTTCGCTTACGTATGAACAGCAGAAGAATCGCTGTAATTGGAGTGGAGTATTATTTTATATAAATAGACATGTAGGATAAATCAATATTCCAAGATGAACGGCCGTGACCACGATGAAAATCCAGAGTGCAGGAACAAATAAGTGAGTCCATTAGGCTCAGGACCAGTGTTGTGCTAGAGCGCCTCAAGG_-_ATGCTGACGAGGGTTACCAATATGGAGCATGTCCAGTGTTCGATCGCCAATATCAGATCGTCTATGTTGGTCAGTGGACACCGGATGCTCACACGAAGCACGGCGCGCGAGTTTTGCTTCCCGACAAAAGCTCCGGGCAGGCAATCGAGCTGCTGGAACGATGGTAGTTGTAGAAGGAGAATCGGTCCAATTTGTGCTGTTATCAGTGATAAACCCGCGACGACGACCGCCGTGACGCCTTCTGTTGACAAGGGTGCGATGATCAATGTGAAGGCCGTGGCCACAATCAGAAAGAAACTCAAGGAGCGCATGAAGGACAAGATCGAGAATCAATGGGTGTCTCTGTTAGATGTCATTGGCCAGAACGTCCTTCTGGAACTAGTCAGTGTTGACATCGATCCAGAGTCAACTAGTGGCAAGAGAAGCAAAGAATCTGCTTTGAAGGGCTGGCTGCTGCAGACTGCCCGTGAAGATAACATAATGGAATGCACTGCAAATTTTACAGTAAGCGCTGACTTTGGTTGGCCGGGAGCTATTTTAGTTACCAATCATCACGACAAAGAAATCTTTTTAGAATCCATTGTAGTGGAAGGGTTCGACAGCGAGCCGATCTACTTCCCCTGCCACTCTTGGGTTCATTCAAAGAAGGATAATCCCGAGAAAAGAATCTTCTTCAGCAATCAGCCATATTTGCCTTCAAAAACCCCTGATGGGCTAGAGGATCTTCGGCAGAAGGACCTGACAGACAAGCGTGGGGATGGCAAAGGTGAACGTAAGCAGTGGGATAGAATTTATGACTATGCGACTTACAATGATTTAGGGAACGCTGATAAAAGTGAGGATCTTGCAAGACCGATTCTTGGTGACGGTGATATAAAATATCCAAGACGCTGTCGCACTGGCCGTCCTCCTATGAAGACAGATCCATCTGCAGAAAGCAGACAAGAAAATCGTAGTACTGTATATGTTCCACGGGATGAAGCATTCGAGGAGATCAAGAAAAGTACATTTTCTGCAGGAGCACTAAAAGGATTATTGCATAACTTGGTACCATCTTTGATAGCTAGTTTCTCGAATCCCAATTATGAGTTTGGGTGCTTTTCTGATATTGATCGTCTGTATAGAGAGGGCCAGATTTTAAAGATTGAGCCACATCAACATGATATTTTTAAAAATCTGATGTTGCCAAAGATAATGAATAACGTGCTAAAAACTGGTGAAGAGCTATTACGATATGAAATCCCAGGCATAATCTCAAGGGATAGATTTGCATGGTTACGTGACAATGAGTTTGGCCGCCAAACATTGGCTGGGGTGAACCCTGTTAATATTGAACGGTTAAAGGACTTTCCCATTCTCAGCAAACTGGATCCGGCAATATATGGTTCACCGGAGTCTGCAATCAAATCTGAACATGTTGAAGGAGAACTAAATGGAATGTCTGTTAAGCAGGCACTTGAAGAGGAAAGATTGTTCATCTTGGACTACTATGATGCATATATGCCGTTTGTCACCAAGATAAATTCTCTGAAGGGGAGAAAGGTTTATGCTTCAAGAACAATATTCTTTTTAACAGCACGTGGCACTCTTAAGCCTATAGTTATTGAGCTCAGTCTTCCACCAACCGTTACTGGAGCTGAATCCAAACAAATTTTCACTCATGGCCATGATGCAACTTCGTACTGGCTTTGGAAATTAGCGAAATCTCATGTGTGCTCCAATGATGCTGGTTTTCACCAGCTCGTCAATCACTGGCTACGGACACATGCTTGCATGGAGCCCTATATTATTGCAGCTAACAGGCAGCTGAGCTGTATGCATCCCATCTTCAAGCTGTTGCAACCACATTTGCGTTACACTATGGAAATTAATGCATTGGCTCGCCAGAGCTTGATAAATGGAGGAGGAGTTATTGAATCTTGCTTTACACCAGACAAGTATTCCATGGAGTTAAGTGCATCTGCATATGACAGAGCATGGCGCTTTGACAGGGAGGCCTTGCCTGCAGACTTGCTTGCAAGGGGCATGGCAGTAGAGGATCCGAGTCAACCCCATGGTCTAAGACTTGTAATTGAAGATTACCCATATGCTGCCGATGGTCTTCTTATTTGGTCTGCCATAAAAGAATGGGTGGAAGATTATGTTTCCATCTATTACTCCGATTCCAACAGTGTGCAAACTGATACTGAACTTCAAGCATGGTGGGATGAAACAATAAACAAAGGGCATTACGATAAAAAAAATGCATCTTGGTGGCCAAAGTTGGAAACAAAGGAAGATCTAGCAGGGATTTTAACTACAATAATCTGGGTAGCATCAGGGCAGCATGCTGCTTTGAATTTTGGACAATACCCATATGGAGGGTATGTACCCAACAGACCCTGTATTATGAGAAAGTTGATCCCCAATGAAACAGATCCAGAGTATAAAAGCTTTCTATTAAATCCACAGAATTTCTTCCTATCATCAATGCCAACTCAGCTCCAAGCCACCAAAACCATGGCTGTCGTGGACACTCTCTCAACGCATTCACCAGACGAAGAATACTTGGGCGAGAGACATGAGACTAAGTGGACTAATGATGGAAGAGCACTGGAGGCCTTTCAAAGGTTTTCTACCACAGTTCAGGGGGTAGAGGAAATCATACATCAGAGAAATGAAGATTCGAGTAAGAAGAACAGGAATGGGGCCGGCGTACTTCCTTACGAGTTATTGCTGCCAACATCAGGTCCAGGCGTAACTGGTCGTGGTATCCCCAACAGTATTTCAATTTAG___CTATCAGGATGAAAGTCCAGTTGTTCCCTATTTTGGGTTTCAGAACTTGTTATGCTTTGACTTCAGCATGATGCTATATATGCATATATGTCTAAACCAATTCTTCTCTCCAAGCTCGGAAAAAATATTAGATCAAGCCTTGCCACTTTTGTCTTCATTAGCAGCAGCAGTAGCCCGGTTTGAAACAATACATGGTAGTTGACTGGCGCCTTTCAAAGCTACTCACCTGTCCAGTCACTCGCAGAGTACATATCCAAGTTGTCATTGGGGTTGTGGATGCGTCGTCTGGATTATCATTCCAAATTCCTATTAATGTTTGACAACGTTTGTTCTTCTTGTGTTGGCCAGCTTCGTTGGTGTTGCCTAACAGCTTTGGCTTTCTACTGCTTTACTTCGACATCTAGTGCATATGCGTTTTCAGGAGGTTTAATAGGTAGGAAATTGAGTCAAATCTGCATATATGTACCTATGTAAAACTAATTTATACATCAAGGTCACACAAAATTCAAGTGGAGGCTCATCGTGTGAAATTGAAATTAAGAATTGCGCTCTAATATCATGTAGCGAAGATTTTGTGCAAGTATTGCATTTGCATATGCCTGTCTTCAAAGTATTCAATAAGGTTGAATGATAGCCTATTTCTTTAGAGTCATCTCGACTTATCGTGTTTGTCTGAAAGTTTCTTTGAACTCATCCCAATTTTGTCATAGGTATTTGAAAGTTTCT

Fln Alignment:

Contig3079___MLTRVTNMEHVQCSIANIRSSMLVSGHRMLTRSTAREFCFPTKAPGRQSSCWNDGSCRRRIGPICAVISDKPATTTAVTPSVDKGAMINVKAVATIRKKLKERMKDKIENQWVSLLDVIGQNVLLELVSVDIDPESTSGKRSKESALKGWLLQTAREDNIMECTANFTVSADFGWPGAILVTNHHDKEIFLESIVVEGFDSEPIYFPCHSWVHSKKDNPEKRIFFSNQPYLPSKTPDGLEDLRQKDLTDKRGDGKGERKQWDRIYDYATYNDLGNADKSEDLARPILGDGDIKYPRRCRTGRPPMKTDPSAESRQENRSTVYVPRDEAFEEIKKSTFSAGALKGLLHNLVPSLIASFSNPNYEFGCFSDIDRLYREGQILKIEPHQHDIFKNLMLPKIMNNVLKTGEELLRYEIPGIISRDRFAWLRDNEFGRQTLAGVNPVNIERLKDFPILSKLDPAIYGSPESAIKSEHVEGELNGMSVKQALEEERLFILDYYDAYMPFVTKINSLKGRKVYASRTIFFLTARGTLKPIVIELSLPPTVTGAESKQIFTHGHDATSYWLWKLAKSHVCSNDAGFHQLVNHWLRTHACMEPYIIAANRQLSCMHPIFKLLQPHLRYTMEINALARQSLINGGGVIESCFTPDKYSMELSASAYDRAWRFDREALPADLLARGMAVEDPSQPHGLRLVIEDYPYAADGLLIWSAIKEWVEDYVSIYYSDSNSVQTDTELQAWWDETINKGHYDKKNASWWPKLETKEDLAGILTTIIWVASGQHAALNFGQYPYGGYVPNRPCIMRKLIPNETDPEYKSFLLNPQNFFLSSMPTQLQATKTMAVVDTLSTHSPDEEYLGERHETKWTNDGRALEAFQRFSTTVQGVEEIIHQRNEDSSKKNRNGAGVLPYELLLPTSGPGVTGRGIPN
C0PT31______________MLMRVANMDQAPCSIADVRSSMLLSGQRMLRRSTAREFCFTRKFPGRQSGCWNDGNCRRRIGLIRAVISDKPATTTAVTPSVDKGAMINVKAVAIFRKRLKEDMKDKIENQWVSLLDVIGQNVLLELVSVDIDPETSCGKRSKESALKGWLLQAAREDNMMECTANFIVSTDFGSPGAILVTNQHDKEIFLESIFVEGFGSEPIYFPCHSWVHAKKYNPEKRIFFSNQTYLPSKTPDGLEDLRQKDLKDKRGDGKGERKHWDRIFDYATYNDLGNADKSEDFARPILGDGDILYPRRCRTGRPPMKTDPSAESRKEKPGTIYVPRDETFEEIKKSTFSAGALKALFHNLVPSLIASFSNPNYEFGCFSDIDRLYREGQIIKFEAHQLDIFKNLMLPKIMKNMLKTGEELLRYEIPSIISRDRFAWLRDNEFGRQTLAGVNPVSIERLKEFPIFSKLDPAIYGSPESAIKSEHVEGELNGMSVEQALEEERLFILDYYDAYMPFVTKINSLKGRKVYASRTIFFLTTAGTLKPIVIELSLPPTVTGAQSKQIFTHGHDATSYWLWKLAKSHVCANDAGYHQLVNHWLRTHACMEPYIIAANRQLSCMHPIFKLLQPHLRYTMEINALARQSLINGGGVIESCFTPDKYSMELSASAYDRKWRFDMEALPADLIARGMAVEDPNQPHGLRLVIEDYPYAADGLLIWSAIEEWVEDYVSIYYSEPNSVQTDIELQAWWDEILNKGHYDKRNASWWPNLKTKEDLAGILTTMIWVASGQHAALNFGQYPYGGYVPNRPCIMRKLIPNETDPEYKSFLSNPQNFFLSSMPTQLQATKTMAVVDTLSTHSPDEEYLGERHESKWTNDGRALEAFQRFSAKIQEVEKIIEQRNEDLSNKNRNGAGVLPYELLLPSSGPGVTGRGIPN

SNPs (tot: 24)

Position	A %	C %	G %	T %	Probability
973		80	20		0.995493
974			20	80	0.995493
1021	85		14		0.993533
1198		63		36	1.0
1611	33			66	0.997452
1812		25		75	0.996473
1928	83		16		0.994512
2188	12		87		0.992554
2189		87		12	0.992554
2190		87		12	0.992554
2346		85		14	0.993533
2349	85	14			0.993533
2352		83	16		0.994512
2353	85			14	0.993533
2382		20	80		0.995493
2464		66		33	0.997452
2614			85	14	0.993533
2642	12		87		0.992554
2983	86		13		0.999973
3190		80		20	0.999996
3243	83	16			0.999991
3370	92		8		0.999718
3439		8	91		0.999766
3719	10			89	0.999919

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain