SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3077

Length: 2930 nt

UniGene Fasta

>sp_v3.0_unigene3077
GACTGCCGATGTCAATAGTTTGTCATCCTTAATCTGCATTCAGAAAGTCGCCCTTGACAAAACGGTGAGAAATGAGCAGGATGAGTTGAATGATCACCTTATTGATTTGCAATTTGTTTCACCACTCAAGCATCACTTATCGATGAGTAGAGTTCTTGCTGACTCGGAACATAGTCCACATAATTTGAAACTGAGGGAAGCTGTCTGCAGCCGCTCCGAGCTTCCGGACGTTTGTCAAGGCTATGGAGAGCTTATCGAGAAGCAGCTCATTGTTCCAGGGTTGTCTAGATCGAAACGCATCATATTGATGCACCAAGTCATGGTTTGGCACCTCTTGAGCGTTCTTTTTTTACAGAGAGATGCAAAATTATCTATGGCCATAGAAAATGACGAAGAATTTGATGGCATGACAGACGTAAAGGAGGGTTCTACGAAAATTGATCCTGAAGCAGAGCCTTTAATTCGCAGGGCAGCGTTTAGTGGCTGGCTGCAAGAGAGCGTTGATCACCGTGTACAGGAAGAAGTTAGGGGTTTAAAAGAGGGGAATGACTTGAAACATATAATGTCACTTTTGACCGGGAGACAACTGGATGAAGCCGTCCAACTGTCTGCTTATAGAGGAGATGTGAGAATGGCTTGTCTGATCAGTCAAGCTGGCGGGTCAATGATTAACAGAACGGATATGGCTGCCCAACTGGAAGCATGGGACACTGAAGGGTTGGATTATAATTTCATAGAGGAGGACAGGTTGAAGCTGTATAAGTTACTTGGAGGAGATATTCAAGGTGCTCTTACAGGTTTGGAAGTAGATTGGAAACGTTATCTAGGCCTGTTGATGTGGTATCATTTGGCGCCAGATACTGCTCTTCCGACCATTATCAGTATTTTTCAACAACTTGTTGACCAAGGAATAGCTCCACCACCAGTTCCCATCTACATTGATGAAGGACCTCTAGAAGAGGCATCAAATTTGAATGTGGAAGGGCGGTATGATCTGACTTATTATCTCATGCTACTTCATGCTAGCGATGAGAAAAATTATGTGAATCTGAGTAAGATGTTCACTTCTTTTTCATCCACTTATGATGCCCTTGATTATCATATGACTTGGCACCAACAGTCCATTCTGCAAGCAATTGGTTTACTGGATTCAAAAGAGCTGCATGTATTATACATGAGCTTTGTGTCACAACTGCTTTGTGTGGGAGAGTGTCATTGGGCCATATATGTTGTTCTTCACATGCCACCTACAACAGATTATCCAATGCTTCATGAGAAAGTTATCAAAGAAATTTTATGCCAATATTGTGAAACATGGAGTTCAGTTGATACACAAAAGCAATTTATTGAGGAATTGGGCATACCGTCTGAGTGGATGCATGAGGCTTTGGCTATACACTGCCAATACTATGGGAACTCGACGAGAGCCCTGGAACACCTTCTCAAGAGTTTACAGTGGCAAAGGGCTCACTCTCTTTTCATTACCTCAGTTGCATCTTCTCTGTTTCTTTCATCTCAACACGCTGAAGTGTGGAGGCTTGTTAGTATCATGGAAGAGCACAAGTCAGAGATCGCGGATTGGGATTTAGGTGCTGGCATATATATTGACTTTTATACCTTACGCACTGCGTTCCAAGATAAGCAGTTGATGGAAGAAATGGATTCTCTGGAGAAGAAAAATGTTGCATGCCAAAATTTCTATGTTCATCTCAATCAGTCATTATGCTTGTGGAGAAGTAAATTTCCAGTAAATGCAAGGGTCACATTCTCAAAAATGGCAGATGAAGTGGCCTCCCTACTTATGTCAGAGAACAAAAAAGATGCCCATACTCGATCCTTGCAAATGAGTTGCTTTGATACTGTAACTGATGCCCCAGTACCAGAGGACCTTCGTCTCTGTCATCTCCAAGATGCAGTTTCAGTTTTCACATCATGGATTTCGGAAGTAACATCTTAAAGGTCTTCAATGGCTAGTAATTGTTTTGCTCTAGTTTTACGTTGGAGGAAGATCATTAAGTTGCAAATAAATTCTATAGCTTTATCCATATGTTTCATGACATTTTGACAAATTCCATGCACAGTTTGGTCAATGAAGAGTCTAAACTTGAAAGAGCAGACATTGTTTAATCCTGCACACTTCACTGTGGGTCAGCATACCAGTCTTTCTCATGATCATCTTTATAATTGCAAATTGGCTTGAACATAAGTGATTTCGTCCTTATAATAAGGTAGTCTAGCTAGAGGTTGGAGCCAAGATCTTTAAGAACCTGAATCAGTTTTATCAATTTCTTTTGACACGATAACTTATTTTTAAGGAACCAGAAATGAGGACATTTTCTTTTCTCTTAAATCCATCAGTCGAAGATTTCACACTCAGTTGCAGCAATACGATTTCCTTCAGAGATTCAAAAGAGGGAAGGATAATTCACTTATGGAACATCATCATTTGGAGTGAAGATCACTTTTATGCTTTTGAACAATTCTTTAGTCAACTCTGGGAATATTGCAGTAGGGAAGAAACATTGGCATGTTTTGATTCTTGAATTACATCCAAACTTGAATTTGTACCTGTAATACATGATAATGGATGGGTTGAGTATGGATGGAGATGAATCTACAGATATTACCTGAGAGGGCCATTTAAATGGAATCTTTCTTGCTCTCTAATTTTTGGAGATATTTTCAAGTGACCTCAGGGCTTTTGTGCCCTCGTGCATTTAGTTGGATAATTTAGTGTTAATCTATAATCGATGATTATTGGATGGAAAATCACATCCATTACTGTTTGGCAGCATCCTTGGATATATTTGCAGCGTGATAAAGTTTTGGCAATATCCTTGTATATATTTACAGCCTGAGTAAATTTTGGCAACATCCTCGTTTTGTAAGTTGCCTCCGGATTTTACCAGTAAAATGAATATTCTTTCTAT

Ace file of the UniGene sp_v3.0_unigene3077

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	putative nucleoporin PRECOZ [Arabidopsis thaliana]	-	-	0.0	52%
FL-Next	tr=Putative uncharacterized protein; Vitis vinifera (Grape).	-	-	0.0	55%

Source	Gene names
Sma3	At1g80680; F23A5.3; GSVIVT00033287001; LOC_Os03g07580; MOS3; Os03g0172000; OsI_10206; OsJ_09594; PHYPADRAFT_144605; POPTRDRAFT_554860; PRE; RCOM_0471030;

Source	GOs	Term	Type	Identity
Sma3	nuclear pore	GO:0005643	Cellular Component	-
Sma3	nuclear membrane	GO:0031965	Cellular Component	-
Sma3	mRNA export from nucleus	GO:0006406	Biological Process	-
Sma3	transport	GO:0006810	Biological Process	-
Sma3	response to auxin stimulus	GO:0009733	Biological Process	-
Sma3	defense response signaling pathway, resistance gene-dependent	GO:0009870	Biological Process	-

Source	InterPros	Term	Type	e value	Identity
Sma3	Peptidase S59, nucleoporin	IPR007230	-	0.0	-
Sma3	EF-Hand 1, calcium-binding site	IPR018247	-	0.0	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G80680.1	SAR3, MOS3, PRE, NUP96 SUPPRESSOR OF AUXIN RESISTANCE 3 chr1:30324219-30328489 FORWARD LENGTH=1046	52%
RefSeq	Arabidopsis thaliana	NP_178183.2	suppressor of auxin resistance 3 [Arabidopsis thaliana]	52%
RefSeq	Populus trichocarpa	XP_002303836.1	predicted protein [Populus trichocarpa]	54%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: tr_plants

Fln subject: F6HXS6

Fln msg: your sequence is shorter than subject: 652 - 790

Fln protein: TADVNSLSSLICIQKVALDKTVRNEQDELNDHLIDLQFVSPLKHHLSMSRVLADSEHSPHNLKLREAVCSRSELPDVCQGYGELIEKQLIVPGLSRSKRIILMHQVMVWHLLSVLFLQRDAKLSMAIENDEEFDGMTDVKEGSTKIDPEAEPLIRRAAFSGWLQESVDHRVQEEVRGLKEGNDLKHIMSLLTGRQLDEAVQLSAYRGDVRMACLISQAGGSMINRTDMAAQLEAWDTEGLDYNFIEEDRLKLYKLLGGDIQGALTGLEVDWKRYLGLLMWYHLAPDTALPTIISIFQQLVDQGIAPPPVPIYIDEGPLEEASNLNVEGRYDLTYYLMLLHASDEKNYVNLSKMFTSFSSTYDALDYHMTWHQQSILQAIGLLDSKELHVLYMSFVSQLLCVGECHWAIYVVLHMPPTTDYPMLHEKVIKEILCQYCETWSSVDTQKQFIEELGIPSEWMHEALAIHCQYYGNSTRALEHLLKSLQWQRAHSLFITSVASSLFLSSQHAEVWRLVSIMEEHKSEIADWDLGAGIYIDFYTLRTAFQDKQLMEEMDSLEKKNVACQNFYVHLNQSLCLWRSKFPVNARVTFSKMADEVASLLMSENKKDAHTRSLQMSCFDTVTDAPVPEDLRLCHLQDAVSVFTSWISEVTS*

Protein Length: 653

Fln nts: GACTGCCGATGTCAATAGTTTGTCATCCTTAATCTGCATTCAGAAAGTCGCCCTTGACAAAACGGTGAGAAATGAGCAGGATGAGTTGAATGATCACCTTATTGATTTGCAATTTGTTTCACCACTCAAGCATCACTTATCGATGAGTAGAGTTCTTGCTGACTCGGAACATAGTCCACATAATTTGAAACTGAGGGAAGCTGTCTGCAGCCGCTCCGAGCTTCCGGACGTTTGTCAAGGCTATGGAGAGCTTATCGAGAAGCAGCTCATTGTTCCAGGGTTGTCTAGATCGAAACGCATCATATTGATGCACCAAGTCATGGTTTGGCACCTCTTGAGCGTTCTTTTTTTACAGAGAGATGCAAAATTATCTATGGCCATAGAAAATGACGAAGAATTTGATGGCATGACAGACGTAAAGGAGGGTTCTACGAAAATTGATCCTGAAGCAGAGCCTTTAATTCGCAGGGCAGCGTTTAGTGGCTGGCTGCAAGAGAGCGTTGATCACCGTGTACAGGAAGAAGTTAGGGGTTTAAAAGAGGGGAATGACTTGAAACATATAATGTCACTTTTGACCGGGAGACAACTGGATGAAGCCGTCCAACTGTCTGCTTATAGAGGAGATGTGAGAATGGCTTGTCTGATCAGTCAAGCTGGCGGGTCAATGATTAACAGAACGGATATGGCTGCCCAACTGGAAGCATGGGACACTGAAGGGTTGGATTATAATTTCATAGAGGAGGACAGGTTGAAGCTGTATAAGTTACTTGGAGGAGATATTCAAGGTGCTCTTACAGGTTTGGAAGTAGATTGGAAACGTTATCTAGGCCTGTTGATGTGGTATCATTTGGCGCCAGATACTGCTCTTCCGACCATTATCAGTATTTTTCAACAACTTGTTGACCAAGGAATAGCTCCACCACCAGTTCCCATCTACATTGATGAAGGACCTCTAGAAGAGGCATCAAATTTGAATGTGGAAGGGCGGTATGATCTGACTTATTATCTCATGCTACTTCATGCTAGCGATGAGAAAAATTATGTGAATCTGAGTAAGATGTTCACTTCTTTTTCATCCACTTATGATGCCCTTGATTATCATATGACTTGGCACCAACAGTCCATTCTGCAAGCAATTGGTTTACTGGATTCAAAAGAGCTGCATGTATTATACATGAGCTTTGTGTCACAACTGCTTTGTGTGGGAGAGTGTCATTGGGCCATATATGTTGTTCTTCACATGCCACCTACAACAGATTATCCAATGCTTCATGAGAAAGTTATCAAAGAAATTTTATGCCAATATTGTGAAACATGGAGTTCAGTTGATACACAAAAGCAATTTATTGAGGAATTGGGCATACCGTCTGAGTGGATGCATGAGGCTTTGGCTATACACTGCCAATACTATGGGAACTCGACGAGAGCCCTGGAACACCTTCTCAAGAGTTTACAGTGGCAAAGGGCTCACTCTCTTTTCATTACCTCAGTTGCATCTTCTCTGTTTCTTTCATCTCAACACGCTGAAGTGTGGAGGCTTGTTAGTATCATGGAAGAGCACAAGTCAGAGATCGCGGATTGGGATTTAGGTGCTGGCATATATATTGACTTTTATACCTTACGCACTGCGTTCCAAGATAAGCAGTTGATGGAAGAAATGGATTCTCTGGAGAAGAAAAATGTTGCATGCCAAAATTTCTATGTTCATCTCAATCAGTCATTATGCTTGTGGAGAAGTAAATTTCCAGTAAATGCAAGGGTCACATTCTCAAAAATGGCAGATGAAGTGGCCTCCCTACTTATGTCAGAGAACAAAAAAGATGCCCATACTCGATCCTTGCAAATGAGTTGCTTTGATACTGTAACTGATGCCCCAGTACCAGAGGACCTTCGTCTCTGTCATCTCCAAGATGCAGTTTCAGTTTTCACATCATGGATTTCGGAAGTAACATCTTAA___AGGTCTTCAATGGCTAGTAATTGTTTTGCTCTAGTTTTACGTTGGAGGAAGATCATTAAGTTGCAAATAAATTCTATAGCTTTATCCATATGTTTCATGACATTTTGACAAATTCCATGCACAGTTTGGTCAATGAAGAGTCTAAACTTGAAAGAGCAGACATTGTTTAATCCTGCACACTTCACTGTGGGTCAGCATACCAGTCTTTCTCATGATCATCTTTATAATTGCAAATTGGCTTGAACATAAGTGATTTCGTCCTTATAATAAGGTAGTCTAGCTAGAGGTTGGAGCCAAGATCTTTAAGAACCTGAATCAGTTTTATCAATTTCTTTTGACACGATAACTTATTTTTAAGGAACCAGAAATGAGGACATTTTCTTTTCTCTTAAATCCATCAGTCGAAGATTTCACACTCAGTTGCAGCAATACGATTTCCTTCAGAGATTCAAAAGAGGGAAGGATAATTCACTTATGGAACATCATCATTTGGAGTGAAGATCACTTTTATGCTTTTGAACAATTCTTTAGTCAACTCTGGGAATATTGCAGTAGGGAAGAAACATTGGCATGTTTTGATTCTTGAATTACATCCAAACTTGAATTTGTACCTGTAATACATGATAATGGATGGGTTGAGTATGGATGGAGATGAATCTACAGATATTACCTGAGAGGGCCATTTAAATGGAATCTTTCTTGCTCTCTAATTTTTGGAGATATTTTCAAGTGACCTCAGGGCTTTTGTGCCCTCGTGCATTTAGTTGGATAATTTAGTGTTAATCTATAATCGATGATTATTGGATGGAAAATCACATCCATTACTGTTTGGCAGCATCCTTGGATATATTTGCAGCGTGATAAAGTTTTGGCAATATCCTTGTATATATTTACAGCCTGAGTAAATTTTGGCAACATCCTCGTTTTGTAAGTTGCCTCCGGATTTTACCAGTAAAATGAATATTCTTTCTAT

Fln Alignment:

Contig3077___LSSLICIQKVALDKTVRNEQDELNDHLIDLQFVSPLKHHLSMSRVLADSEHSPHNLKLREAVCSRSELPDVCQGYGELIEKQLIVPGLSRSKRIILMHQVMVWHLLSVLFLQRDAK-LSMAIENDEEFDGMTDVKEGSTKIDPEAEPLIRRAAFSGWLQESVDHRVQEEVRGLKEGNDLKHIMSLLTGRQLDEAVQLSAYRGDVRMACLISQAGGSMINRTDMAAQLEAWDTEGLDYNFIEEDRLKLYKLLGGDIQGALTGLEVDWKRYLGLLMWYHLAPDTALPTIISIFQQLVDQGIAPPPVPIYIDEGPLEEASNLNVEGRYDLTYYLMLLHASDEKNYVNLSKMFTSFSSTYDALDYHMTWHQQSILQAIGLLDSKELHVLYMSFVSQLLCVGECHWAIYVVLHMPPTTDYPMLHEKVIKEILCQYCETWSSVDTQKQFIEELGIPSEWMHEALAIHCQYYGNSTRALEHLLKSLQWQRAHSLFITSVASSLFLSSQHAEVWRLVSIMEEHKSEIADWDLGAGIYIDFYTLRTAFQDK-QLMEEMDSLEKKNVACQNFYVHLNQSLCLWRSKFPVNARVTFSKMADEVASLLMSENKKDAHTRSLQMSCFDTVTDAPVPEDLRLCHLQDAVSVFTSWISEV
F6HXS6______________LSSVINLEKVAIDKVVRDENNKVRKELVDSCFISPLKLHKDIKHETKEVEIGSFKLRLQNPVSNRLMLSEICRSYIGIIERQLEVPEVSSSARVVLMHQVMVWELIKVLFSAREISGQSKSAGADNEEDMMHDRSEGSSDVDLEALPLIRRAEFSYWLQESVCHRVQDEVSSLNESSDLEQILLLLTGRQLDAAVELAASRGDVRLACLLSQAGGSTINRADVAQQLDLWRTNGLDFNFIEKDRIRLFELLAGNIHGALHGKNIDWKRFLGLLMWYQLPPDTSLPFVFRNYQQLLVDGGAPHPVPVYIDEGPVEEAVSWSVGERYDLAYYLMLLHASEGSEFGLGKTMFSAFSSTHDPLDYHMIWHQRAVLEAVGAFSSNDLHVLDMGLVSQLLCLGQCHWAIYVVLHMPFRDDFPYLQATLIREILFQYCESWHSQELQRQFMEDLGIPLAWLHEAMAVYFNYCGDLSRALEHYIACANWQKAHSLFMTSVAHSLFLSAKHSEIWRLATSMEDHKSEIEHWDLGAGVYISFYLIRSSLQEENNTMCELDSLESKNAACKDFFSCLNESLAVWGGRLPVDARVAYSKMAEEICGLLLSDS-GEGSTRDVQLSCFDTVFSAPVPEDLHSSHLQNAVALFTCSLLEV

SNPs (tot: 14)

Position	A %	C %	G %	T %	Probability
893		75		25	0.996473
894	75		25		0.996473
895	75			25	0.996473
1080	20	80			0.995493
1081	20			80	0.995493
1082		20		80	0.995493
2480	80	20			0.995493
2482	80			20	0.995493
2483	80			20	0.995493
2484			20	80	0.995493
2485			20	80	0.995493
2489		20		80	0.995493
2491		20	80		0.995493
2727	20		80		0.995493

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain