SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3075

Length: 2848 nt

UniGene Fasta

>sp_v3.0_unigene3075
GATAGAGTAAGGTATGTTGGACCAAGTAATGGGTCATCAACAGCCAGTTTTCCTGTTTCTTCTCACCGTGGTTCCTCTGGAAGCAAAGGGCCATCAATTGGTGCGAAAGGTCGAGTGATACTTTTGCTGGATGAGAATCCCAATAAAGTTGGAGTCCGGTTTGATAAACCAGTTTATGGTGGAAACAACATGGTGGATCTTTGTGAAGATGGCTATGGGTATTTTTGCAATGTGTTGGAGCTTCGTTTGGAGCATTCTGTTGGTGAGGATGAGAATAAGACAATGCTTGATGCCCTTATTGATGTTTTGAGTAGTGAAGCATCAAAGGAGCCTTTGGTCCTTTTCATAAAGGATGTTGAAAGATCAATAATAGGCAACCTGGAACACTACAAGAAATTGGAACAACTGCTCAAAGCAGAGTGTAGGGTGGTCATTATTGGATCTCATACAATGGATTTTCAGAAGGATAAGGGGAATGTGGGCACTTATTCTACGTCAAAATCTGGCAATAGTCTTGCTCCTCTTCTAGACTTGTCATTCTTGGATAATTTTATGTCCCGGTTGGATGATATGAAGGGGGAAGGTTCAAAGTCTTCGAGATCTCTCTTCAAGCTTTTTCCTACTAGAATCTATTTACAGCAGCCACAGGATGAAAACATGGCCATGGATTGGAACCAACAATTGGAACAAGATATTGAAAGACTAAAGGCAGAAGCCAATAGGCAACAACTTCGCATGGTCATGGGATCTTCAGGCATCACATGTAAAGATCTGACGGAACTTGACATTAAGAACCACATTCTAACTTATGATATGGCAGAAAAGGTGGTAGGATGGGCTGTAAGCCGCCAGTTGCAGAAAGATGCGGAACCAGTTTTATTTAATGGAAAGCTGGTTATAACTGCTGAAAGCATGCAGAATACCCTTACAGAGCTTCTATCTGTGCAACGAGCTTCACCACTTAAAAAATCTTTGAAGGATGTTACATGTGACAATGAGTTTGAGAAGATACTAATATCTGAAGTTATTCCACCGGATGAACTAGGAGTCACGTTTGATTGTATTGGAGCCCTTGACAACGTTAAAGAAGCACTTAGGGAGCTAGTTATGTTGCCATTGCAGCGACCAGAGCTCTTTGCAAAGGGACAATTACGGAAGCCGTGCAGAGGTCTTCTTCTGTTTGGTCCTCCTGGAACTGGAAAAACAATGCTTGCGAAGGCTGTTGCCACAGAAGCAGGGGCAAATTTTATAAATATCTCAATGTCGACAGTTGCATCAAAGTGGTTTGGTGAAGCAGAGAAGTATGTCAAGGCGGTGTTTACTTTAGCTAATAAAATAGCCCCTAGTGTTATATTTATTGATGAGGTGGACAGCATGCTGGGAAGAAGAGGAAAGGACTCTGAGCATTCTGCTATGCGTAAGCTAAAGAATGAATTTATGGCTAGTTGGGATGGTCTCAGGACACGGGATAAAGAACGAGTGCTGGTTCTTGCTGCTACAAACCGTCCATTTGATCTAGATGAAGCAGTCATTCGAAGGTTTCCAAGGAGGTTAATGGTTGATCTCCCAGATGCTGAGAACCGAGTAAAAATCCTCAGGGTCATCCTAGTAGATGAAGACTTGGCACCAGATTTTAATATAGAGGAATTGGCTACTGCCACTGATGGCTACTCGGGAAGTGACTTGAAGAGCTTATGCACGACTGCTGCATATCAACGAATTCGTGAGCTATTAGATCAAGAAAGTAAGGAGAGAGAGAAAGCAAAATCTGAAGGACAGCCTCCACCTCTAACCTCTAAAACACCTGAACTCCGTCCCATAAGTATGTCTGATATGCGACAAGCCATGGAAAAGGTTCGTTCTAGTGTCTCTTCAGATGCTCGAAGTATTCTTGAATTGCGGCAATGGAATGAGCAATATGGAGAAGGTGGAACAAGGAAGGTGATGACTTTAAGTTATTTCATGTGAAATAAGCTACACCTTTTAAGAGGTAAGAAACATCATGTAATCTGGAGATCATAAATTGTAAATCTTCAACTGGAGCTGATTATGGTACCAGTATTTTGGCAAGTGTTTCACAAGTTCACAGGAGTTTAATTTTCGAACTTCTGGAAGGTGGAAGGTTGATTTCCAATATAATGTCAGTAGGCAATGCGTCATGAAATAAGTGAGATGAGCTTGACTCTAATAAAATGGCTTCTGATCCAAATTGGGAGAAACTTCTAATCATGATGACAGAAAATCTCAAGGAAGTGCATGGCATGTCTGGACTTATTGGTTAACAGGTCAAGGAAATACATTCTACCTACATCAAAACATCTAAAGTAAATTTATTGGCAGGTGAACAGGCACATTTATGCAAAAAATCTTCAAACACATATCTGAATGGGTCACTGATAGGGTTGAAGCCCTAAAGATAATGGTTTACATTCTTTAGCATGAACTTTACACTGTAAGGAATTATATAATTTTGATACCTTTCTCAGTAGAGTTTTACAGTCGCGCACAGATTGAGGTAAACCGCAAAGCTGAATCAAATGATTTCATTGTCGTATTATTTGCCAGATGCCCACTTATGGTGAATTATCTGTACCAGAGCTCTGCTTCTAATCAAGTGTATAAAATAAATGAGATGAAAAATTCCAAATTTTCAGATATAGACATATTCCAATTTCCAATTATGTCATGAAGTAGTCTCTAGGTTGTCATCTTTACAGGTAAATATCCGATTCAATTAATGTCTATGAGGAGTGCGTATGGTATCTATAATGTGGTAAAGATAATTAACATGGAAAGAATCGGAAAAATACAACCTTCTGCATATCAACTCAGATGAGCATTTCATGTT

Ace file of the UniGene sp_v3.0_unigene3075

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	AAA-type ATPase family protein [Arabidopsis thaliana] dbj\|BAF01763.1\| hypothetical protein [Arabidopsis thaliana] gb\|AEE82177.1\| AAA-type ATPase family protein [Arabidopsis thaliana]	-	-	0.0	54%
FL-Next	tr=Putative uncharacterized protein; Selaginella moellendorffii (Spikemoss).	-	-	0.0	73%
Sma3	Katanin p60 ATPase-containing subunit, putative	-	-	2.636e-07	-

Source	ECs	Term	Type	e value	Identity
Sma3	Microtubule-severing ATPase.	EC:3.6.4.3	-	2.17e-29	-

Source	Gene names
Sma3	AAA1; AT1G64110; AT2G34560; AT4g02470; AT4g24850; AT4g27680; AT4g28000; At1g02890; At1g64110; At1g64110/F22C12.12; At1g80350; At2g34560; At2g45500; At4g02470; At4g02480; At4g24850; At4g27680; At4g28000; At5g52882; At5g53540; B1103G11.33; BOT1; CDC48; CHLR

Source	GOs	Term	Type	Identity
Sma3	nucleus	GO:0005634	Cellular Component	-
Sma3	cytosol	GO:0005829	Cellular Component	-
Sma3	microtubule	GO:0005874	Cellular Component	-
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	protein complex	GO:0043234	Cellular Component	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	RNA-directed DNA polymerase activity	GO:0003964	Molecular Function	-
Sma3	ATP-dependent peptidase activity	GO:0004176	Molecular Function	-
Sma3	serine-type endopeptidase activity	GO:0004252	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	thiamine diphosphokinase activity	GO:0004788	Molecular Function	-
Sma3	protein binding	GO:0005515	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	microtubule-severing ATPase activity	GO:0008568	Molecular Function	-
Sma3	nucleoside-triphosphatase activity	GO:0017111	Molecular Function	-
Sma3	mismatched DNA binding	GO:0030983	Molecular Function	-
Sma3	RNA-dependent DNA replication	GO:0006278	Biological Process	-
Sma3	mismatch repair	GO:0006298	Biological Process	-
Sma3	proteolysis	GO:0006508	Biological Process	-
Sma3	thiamine metabolic process	GO:0006772	Biological Process	-
Sma3	cell cycle	GO:0007049	Biological Process	-
Sma3	thiamine diphosphate biosynthetic process	GO:0009229	Biological Process	-
Sma3	multidimensional cell growth	GO:0009825	Biological Process	-
Sma3	plant-type cell wall biogenesis	GO:0009832	Biological Process	-
Sma3	trichome branching	GO:0010091	Biological Process	-
Sma3	cortical microtubule organization	GO:0043622	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	Forkhead-associated (FHA) domain	IPR000253	-	-
Sma3	Reverse transcriptase	IPR000477	-	-
Sma3	Like-Sm ribonucleoprotein (LSM) domain	IPR001163	-	-
Sma3		IPR001984	-	-
Sma3	CDC48, N-terminal subdomain	IPR003338	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	ATPase-like, ATP-binding domain	IPR003594	-	-
Sma3	ATPase, AAA-type, core	IPR003959	-	-
Sma3	ATPase, AAA-type, conserved site	IPR003960	-	-
Sma3	CDC48, domain 2	IPR004201	-	-
Sma3	Endonuclease/exonuclease/phosphatase	IPR005135	-	-
Sma3	Sugar transporter, conserved site	IPR005829	-	-
Sma3	ATPase, AAA-type, CDC48	IPR005938	-	-
Sma3	Thiamin pyrophosphokinase	IPR006282	-	-
Sma3	Like-Sm ribonucleoprotein (LSM) domain, eukaryotic/archaea-type	IPR006649	-	-
Sma3	MIT	IPR007330	-	-
Sma3	Thiamin pyrophosphokinase, catalytic domain	IPR007371	-	-
Sma3	Thiamin pyrophosphokinase, vitamin B1-binding domain	IPR007373	-	-
Sma3	Aspartate decarboxylase-like fold	IPR009010	-	-
Sma3	DNA mismatch repair protein, C-terminal	IPR013507	-	-
Sma3	Ribosomal protein S5 domain 2-type fold, subgroup	IPR014721	-	-
Sma3	MutL, C-terminal, dimerisation	IPR014790	-	-
Sma3	Vps4 oligomerisation, C-terminal	IPR015415	-	-
Sma3		IPR015706	-	-
Sma3	Peptidase S1/S6, chymotrypsin/Hap, active site	IPR018114	-	-
Sma3	Small acid-soluble spore protein, alpha/beta-type, conserved site	IPR018126	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT4G02480.1	AAA-type ATPase family protein chr4:1082082-1088680 REVERSE LENGTH=1265	54%
RefSeq	Arabidopsis thaliana	NP_567238.2	AAA-type ATPase family protein [Arabidopsis thaliana]	54%
RefSeq	Populus trichocarpa	XP_002301474.1	predicted protein [Populus trichocarpa]	54%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: tr_plants

Fln subject: D8QYJ9

Fln msg:

Fln protein: MVDLCEDGYGYFCNVLELRLEHSVGEDENKTMLDALIDVLSSEASKEPLVLFIKDVERSIIGNLEHYKKLEQLLKAECRVVIIGSHTMDFQKDKGNVGTYSTSKSGNSLAPLLDLSFLDNFMSRLDDMKGEGSKSSRSLFKLFPTRIYLQQPQDENMAMDWNQQLEQDIERLKAEANRQQLRMVMGSSGITCKDLTELDIKNHILTYDMAEKVVGWAVSRQLQKDAEPVLFNGKLVITAESMQNTLTELLSVQRASPLKKSLKDVTCDNEFEKILISEVIPPDELGVTFDCIGALDNVKEALRELVMLPLQRPELFAKGQLRKPCRGLLLFGPPGTGKTMLAKAVATEAGANFINISMSTVASKWFGEAEKYVKAVFTLANKIAPSVIFIDEVDSMLGRRGKDSEHSAMRKLKNEFMASWDGLRTRDKERVLVLAATNRPFDLDEAVIRRFPRRLMVDLPDAENRVKILRVILVDEDLAPDFNIEELATATDGYSGSDLKSLCTTAAYQRIRELLDQESKEREKAKSEGQPPPLTSKTPELRPISMSDMRQAMEKVRSSVSSDARSILELRQWNEQYGEGGTRKVMTLSYFM*

Protein Length: 594

Fln nts: GATAGAGTAAGGTATGTTGGACCAAGTAATGGGTCATCAACAGCCAGTTTTCCTGTTTCTTCTCACCGTGGTTCCTCTGGAAGCAAAGGGCCATCAATTGGTGCGAAAGGTCGAGTGATACTTTTGCTGGATGAGAATCCCAATAAAGTTGGAGTCCGGTTTGATAAACCAGTTTATGGTGGAAACAAC_-_ATGGTGGATCTTTGTGAAGATGGCTATGGGTATTTTTGCAATGTGTTGGAGCTTCGTTTGGAGCATTCTGTTGGTGAGGATGAGAATAAGACAATGCTTGATGCCCTTATTGATGTTTTGAGTAGTGAAGCATCAAAGGAGCCTTTGGTCCTTTTCATAAAGGATGTTGAAAGATCAATAATAGGCAACCTGGAACACTACAAGAAATTGGAACAACTGCTCAAAGCAGAGTGTAGGGTGGTCATTATTGGATCTCATACAATGGATTTTCAGAAGGATAAGGGGAATGTGGGCACTTATTCTACGTCAAAATCTGGCAATAGTCTTGCTCCTCTTCTAGACTTGTCATTCTTGGATAATTTTATGTCCCGGTTGGATGATATGAAGGGGGAAGGTTCAAAGTCTTCGAGATCTCTCTTCAAGCTTTTTCCTACTAGAATCTATTTACAGCAGCCACAGGATGAAAACATGGCCATGGATTGGAACCAACAATTGGAACAAGATATTGAAAGACTAAAGGCAGAAGCCAATAGGCAACAACTTCGCATGGTCATGGGATCTTCAGGCATCACATGTAAAGATCTGACGGAACTTGACATTAAGAACCACATTCTAACTTATGATATGGCAGAAAAGGTGGTAGGATGGGCTGTAAGCCGCCAGTTGCAGAAAGATGCGGAACCAGTTTTATTTAATGGAAAGCTGGTTATAACTGCTGAAAGCATGCAGAATACCCTTACAGAGCTTCTATCTGTGCAACGAGCTTCACCACTTAAAAAATCTTTGAAGGATGTTACATGTGACAATGAGTTTGAGAAGATACTAATATCTGAAGTTATTCCACCGGATGAACTAGGAGTCACGTTTGATTGTATTGGAGCCCTTGACAACGTTAAAGAAGCACTTAGGGAGCTAGTTATGTTGCCATTGCAGCGACCAGAGCTCTTTGCAAAGGGACAATTACGGAAGCCGTGCAGAGGTCTTCTTCTGTTTGGTCCTCCTGGAACTGGAAAAACAATGCTTGCGAAGGCTGTTGCCACAGAAGCAGGGGCAAATTTTATAAATATCTCAATGTCGACAGTTGCATCAAAGTGGTTTGGTGAAGCAGAGAAGTATGTCAAGGCGGTGTTTACTTTAGCTAATAAAATAGCCCCTAGTGTTATATTTATTGATGAGGTGGACAGCATGCTGGGAAGAAGAGGAAAGGACTCTGAGCATTCTGCTATGCGTAAGCTAAAGAATGAATTTATGGCTAGTTGGGATGGTCTCAGGACACGGGATAAAGAACGAGTGCTGGTTCTTGCTGCTACAAACCGTCCATTTGATCTAGATGAAGCAGTCATTCGAAGGTTTCCAAGGAGGTTAATGGTTGATCTCCCAGATGCTGAGAACCGAGTAAAAATCCTCAGGGTCATCCTAGTAGATGAAGACTTGGCACCAGATTTTAATATAGAGGAATTGGCTACTGCCACTGATGGCTACTCGGGAAGTGACTTGAAGAGCTTATGCACGACTGCTGCATATCAACGAATTCGTGAGCTATTAGATCAAGAAAGTAAGGAGAGAGAGAAAGCAAAATCTGAAGGACAGCCTCCACCTCTAACCTCTAAAACACCTGAACTCCGTCCCATAAGTATGTCTGATATGCGACAAGCCATGGAAAAGGTTCGTTCTAGTGTCTCTTCAGATGCTCGAAGTATTCTTGAATTGCGGCAATGGAATGAGCAATATGGAGAAGGTGGAACAAGGAAGGTGATGACTTTAAGTTATTTCATGTGA___AATAAGCTACACCTTTTAAGAGGTAAGAAACATCATGTAATCTGGAGATCATAAATTGTAAATCTTCAACTGGAGCTGATTATGGTACCAGTATTTTGGCAAGTGTTTCACAAGTTCACAGGAGTTTAATTTTCGAACTTCTGGAAGGTGGAAGGTTGATTTCCAATATAATGTCAGTAGGCAATGCGTCATGAAATAAGTGAGATGAGCTTGACTCTAATAAAATGGCTTCTGATCCAAATTGGGAGAAACTTCTAATCATGATGACAGAAAATCTCAAGGAAGTGCATGGCATGTCTGGACTTATTGGTTAACAGGTCAAGGAAATACATTCTACCTACATCAAAACATCTAAAGTAAATTTATTGGCAGGTGAACAGGCACATTTATGCAAAAAATCTTCAAACACATATCTGAATGGGTCACTGATAGGGTTGAAGCCCTAAAGATAATGGTTTACATTCTTTAGCATGAACTTTACACTGTAAGGAATTATATAATTTTGATACCTTTCTCAGTAGAGTTTTACAGTCGCGCACAGATTGAGGTAAACCGCAAAGCTGAATCAAATGATTTCATTGTCGTATTATTTGCCAGATGCCCACTTATGGTGAATTATCTGTACCAGAGCTCTGCTTCTAATCAAGTGTATAAAATAAATGAGATGAAAAATTCCAAATTTTCAGATATAGACATATTCCAATTTCCAATTATGTCATGAAGTAGTCTCTAGGTTGTCATCTTTACAGGTAAATATCCGATTCAATTAATGTCTATGAGGAGTGCGTATGGTATCTATAATGTGGTAAAGATAATTAACATGGAAAGAATCGGAAAAATACAACCTTCTGCATATCAACTCAGATGAGCATTTCATGTT

Fln Alignment:

Contig3075___VLELRLEHSVGEDENKTMLDALIDVLSSEASKEPLVLFIKDVERSIIGNLEHYKKLEQLLKAECRVVIIGSHTMDFQKDKGNVGTY-STSKSGNSLAPLLDLSFLDNFMSRLDDMKGEGSKSSRSLFKLFPTRIYLQQPQDENMAMDWNQQLEQDIERLKAEANRQQLRMVMGSSGITCKDLTELDIKNHILTYDMAEKVVGWAVSRQLQKDAEPVLFNGKLVITAESMQNTLTELLSVQRASPL-KKSLKDVTCDNEFEKILISEVIPPDELGVTFDCIGALDNVKEALRELVMLPLQRPELFAKGQLRKPCRGLLLFGPPGTGKTMLAKAVATEAGANFINISMSTVASKWFGEAEKYVKAVFTLANKIAPSVIFIDEVDSMLGRRGKDSEHSAMRKLKNEFMASWDGLRTRDKERVLVLAATNRPFDLDEAVIRRFPRRLMVDLPDAENRVKILRVILVDEDLAPDFNIEELATATDGYSGSDLKSLCTTAAYQRIRELLDQESKEREKAKSEG--QPPPLTSKTPELRPISMSDMRQAMEKVRSSVSSDARSILELRQWNEQYGEGGTRKVMTLSYFM
D8QYJ9______________VSELRLEHSSGEDVDKLILDSLIEVLVSEASKVPLILLIKNVEKSIMGNFERYMKLERLEKADVKLVIIGSHTSDHHKDKGSSGSYHSNSKMGNNFTAFLDMSLLDHLSTRAEDYKPDGSKCSRMLAKLFPSKIYVQQPQDENMLLVWNRQLEQDTERLKAEANRQLLRIIMSTSNVECNDLSTINIQTHLLTHDMAEKVVGWGISHHLQHHVEPLHRNGKIVIKAESLEHSLAELQAIQRGSTQRKKTLKDVVCDNEFEKILLPEVIPPDEIRVTFDHIGALDNVKETLRELVMLPLQRPELFVKGQLTKPCRGLLLFGPPGTGKTMLAKAVATEAGANFINISMSTIASKWFGEAEKYVKAVFTLASKISPSVVFIDEVDSMLGRRGKDHEHSAMRKLKNEFMASWDGLRTREKERVIVLAATNRPFDLDEAVIRRFPRRLMIDVPDAENRAKILKVILSDEDLSPDFNMEEVAAAADGYSGSDLKNLCTTAAYIRIRELLEQEKKEMEKAKAQGVEKPAAPTGVTPYIRPISMADMRHAMEKVRSSVSSDAGIMGELQQWNEQYGEGGTRKKATLTYFM

SNPs (tot: 19)

Position	A %	C %	G %	T %	Probability
721	80		20		0.995493
780	85	14			0.993533
781	14	85			0.993533
1478	16		83		0.999991
1480			83	16	0.999991
1609	14		85		0.993533
1614		28		71	1.0
1625		57		42	1.0
1673		80		20	0.995493
1847			33	66	0.997452
2168	83			16	0.994512
2170			16	83	0.994512
2340	60			40	1.0
2368	14			85	0.993533
2390	42		57		1.0
2392		14		85	0.993533
2397	14		85		0.993533
2555	90		10		0.90298
2653		83		16	0.994512

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain