SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3054

Length: 2942 nt

UniGene Fasta

>sp_v3.0_unigene3054
ACAGGAAGTTATTTCCTACAAGTCCACCTGTAGTAGAAGTGGCTACAAGGCAGTTTCCTGTAACCATTCATTTCTCTGCAAAGACAGAGCTGGTAGATTACTTGGGGAAGGCTTACCAAAAGGTTGTAGCTATTCACAAGAAGTTGCCACCTGGTGGTATACTGGTATTTGTCACAGGACAAAGGGAAGTGGAATTGCTATGCAGGCAGCTGAGGAAAGCCTTTGTGAAAAGAAGCAAAAGCAATGTTAAAATACAAGATATCTCTCAAAAATCAAAGCCCACTGTAGACATAAATGATGTTGCAAGTGAAACCAATCTTGAGGGCATTGCTCAAGCTGTGGATGGCACAGACAGTGGGCAACACAAAGATGGAACTGACAGGTTTAACTCATTTGACGATGAGGGGTTTGAAGTTCAATCAGAGGCAAACTCATCTTCCTCTGATGCTGAATTTGATTCAGATTCAGATAGTGAAGAAGAAGAGTGTCTTGACAGTGTTGCTGATAATACTTTGCAACAGAATAACTTACTTAAAGAACCAGGGTGCCTGGAATCGCTTAAGGCTACTTTTGAAGTTCTGACTAGTGGTAACGACAGTGGAAAACTTAACATAAATTCAAGCAAACAAATGGATGCAAACATTGATAAAGAAAAGAAGACGGATAAAAACAGTGATACAAGATTGAGAGAGCCAGGTTCTCTGTATTGTTTGCCTCTGTATGCAATGTTGCCTGCAGTAGCACAATTACGGGTATTTGCTGGGGTACCAGAAGGACAAAGGCTTGTTGTTGTGGCTACAAATGTTGCAGAAACTTCCTTAACAATCCCTGGTATTAAATATGTCGTTGACTGTGGTCGAGCAAAGGTTAAAGACTACAACTGTTCAAGTGGGATAGCAAAATATGAGATCCAATGGATTAGCAAGGCATCGGCTGCTCAGCGTGCTGGCAGAGCAGGAAGAACTGGACCAGGACATTGTTATCGTCTTTATTCTTCTGCAGTTTTCAACAATACATTTCCTGATTTTTCTGTACCTGAAATATGCAAGGTTCCTATCGAGGGTATTGTACTTCTTCTGAAATACATGGGTATCAATAAGGTAGTCAACTTCCCTTTCCCTACCCCTCCCGATATGACATCCTTAGAGGAAGCTGAACGATGCTTGAAGGCCCTTTCAGCACTGGATCAAGCTACAGGAATGCTTATGCCAGTTGGAGAAGCGATGGCATTATATCCTATCAGTCCTCGTCATTCGCGTATGCTTTTAACTGTCTTTGAAACAGTAAGTAAGTTGGAGGAATGGGCTGGAGCAAACTTGGTTTTAGCTTTTGCCATAGCTGTTGCAGCAGCATTGAGTATGGATAATCCATTCCTTACACAATTTAGCTCAAATGCAGTGCAAGACAGCCAGGAAAAAGAAATGGGAGTCAATGCTTTGAATGGAAAGGACACTGAAGAGCAAGAATATCTGCAAATAAAGAAGCAGCGTGAAATGGCTAATGCTGCACATAAGATGTTTGAAAATATGAGCAGTGATGCGTTAACAGTGGCAAATGCACTCCGTTCTTATGAGCTTGCAGGTAATCCAGGGGAGTTTTGTAGGACTAATTCCTTACATCTTAAAACAATGGATGAAATGTCAAAGCTTCGAAAGCAGCTGCTTCAACTTATTTTTAACCAGAAAATGGAGAAAAAACTAAAACAGGACTTCACTTGGGACTTTGGAAATTTAGCAGATGTAGAGCTTGCTTGGATGGAGTCTATGGACAAGCCTCTTACGCCAACTCAAGAAGACATACTGGGACAGGCAATCTGTGCAGGTTGGGCTGACAGAATTGCACGGCGTCTAAGATCCCATATGAAGATAAAAGCATTACCAGAAGGGCAAAGGCCTAAAGCAGTCAGATATCAAGCCTGCTCTGTTGAAGAAAATGTATTTCTGCACCCCACATCTTCTGTTGCTAGATTGGCACCTGAGTTTGTTGTTTATAATGAACTTATTCAGACGTCGAGACCATACATGCGTGGTGTGACAAGTGTGAAGCCAACATGGCTCGTTTTACATGCAAGGGCTCTGTGCACATTTTCTAGGCCTCTTGCAGATCCGCTACCATACTATGACTCTTCATTGGATGAGATATTTTGCTGGGTAGCTCCTACATTTGGTCCGCATTTATGGGAACTTCCTCTTGATAGATCTCCTATGAAGAGTGGGAATCGCCGGATAGCAGTGTTTGCTTGTGCACTTATTCAAGGAAAAGTTCTACCTTGCCTGAAACAGGTGATGAATTTTCTTGCGGCTGATCCTTTAATGTTGCTGAAACCTGAGGCTGCAGCACAGAAACGTGTCAGTGACCTTCTTCACAGATTGAGTGCAGGCCCAATTGTCGTTGATAGCCGTATTAAACTTAAGTCTGTTTGGGATGCTGATCCAAAGTTCTTGTATTTTGAAATATTATCGTGGTTCCAAAGTAAATTTCATCGGAAGTTTGAAGTACTTTGGGAGCAGATGAAGCACGAAGCCCAGTTGGATTGTAAACAACTATTTCCAAAGAAAATTAAGAAATACAGCAGTGTAAAGCATAGGCTGAAGAAATGACCTATGAAAATGGGTTAGCTTCAAGCCTCAGAATTGTTCAGCATTTATTTATCTGAGTGTAAGACCAATCTCATTTAGCTTAATCTATTTGATGACCTATTTAGAAATGTTGTTTGAAGGAAATAATGTGTAGTAGCTATGTCTGCAATGTGTTTTCAACAAAACTGAGACACATTCTTTGGCCTCAAGATTGCACTGAACAGGTTCAAGGAACTATCAAAACTGAGTTGCATTGTTTAGCCTCAAGTTTACACCGAACATCTTGACGGAACTATTTTGTACAAATTATTGCACCGAGAGATGCTTTCCAGCCCACTATGGAAGAGATGTTGTAATGTCATG

Ace file of the UniGene sp_v3.0_unigene3054

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	PREDICTED: similar to helicase domain-containing protein n=1 Tax=Vitis vinifera RepID=UPI0001983869	-	-	0.0	49%
FL-Next	tr=Putative uncharacterized protein; Picea sitchensis (Sitka spruce) (Pinus sitchensis).	-	-	0.0	25%
Sma3	ATP-dependent RNA helicase, putative	-	-	2.178e-06	-

Source	Gene names
Sma3	At1g33390; CHLREDRAFT_120088; CHLREDRAFT_132956; F10C21.6; GSVIVT00028045001; LOC_Os03g19960; MUT6; Os02g0736600; Os03g0314100; OsI_08853; OsJ_06372; OsJ_08305; Ot05g03840; P0487D09.24; PHATRDRAFT_708; PHYPADRAFT_150197; POPTRDRAFT_552479; RCOM_0158690; R

Source	GOs	Term	Type	Identity
Sma3	nucleic acid binding	GO:0003676	Molecular Function	-
Sma3	RNA binding	GO:0003723	Molecular Function	-
Sma3	helicase activity	GO:0004386	Molecular Function	-
Sma3	ATP binding	GO:0005524	Molecular Function	-
Sma3	ATP-dependent helicase activity	GO:0008026	Molecular Function	-
Sma3	oxidoreductase activity	GO:0016491	Molecular Function	-

Source	InterPros	Term	Type	Identity
Sma3	Fumarate lyase	IPR000362	-	-
Sma3	Helicase, C-terminal	IPR001650	-	-
Sma3	DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site	IPR002464	-	-
Sma3	Ribosomal protein S1, RNA-binding domain	IPR003029	-	-
Sma3	AAA+ ATPase domain	IPR003593	-	-
Sma3	Helicase-associated domain	IPR007502	-	-
Sma3	Domain of unknown function DUF1605	IPR011709	-	-
Sma3	Nucleic acid-binding, OB-fold	IPR012340	-	-
Sma3	Helicase, superfamily 1/2, ATP-binding domain	IPR014001	-	-
Sma3		IPR014021	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT1G33390.1	ATFAS4, FAS4 RNA helicase family protein chr1:12099738-12104108 REVERSE LENGTH=1237	46%
RefSeq	Arabidopsis thaliana	NP_174605.1	putative RNA helicase [Arabidopsis thaliana]	46%
RefSeq	Populus trichocarpa	XP_002302733.1	predicted protein [Populus trichocarpa]	48%

Full-Lengther Next Prediction

Fln status: Putative Complete

Fln database: coniferopsida.fasta

Fln subject: D5ADJ5

Fln msg: No stop codon before M and low homology subject, your sequence is longer than subject: 657 - 348

Fln protein: MDANIDKEKKTDKNSDTRLREPGSLYCLPLYAMLPAVAQLRVFAGVPEGQRLVVVATNVAETSLTIPGIKYVVDCGRAKVKDYNCSSGIAKYEIQWISKASAAQRAGRAGRTGPGHCYRLYSSAVFNNTFPDFSVPEICKVPIEGIVLLLKYMGINKVVNFPFPTPPDMTSLEEAERCLKALSALDQATGMLMPVGEAMALYPISPRHSRMLLTVFETVSKLEEWAGANLVLAFAIAVAAALSMDNPFLTQFSSNAVQDSQEKEMGVNALNGKDTEEQEYLQIKKQREMANAAHKMFENMSSDALTVANALRSYELAGNPGEFCRTNSLHLKTMDEMSKLRKQLLQLIFNQKMEKKLKQDFTWDFGNLADVELAWMESMDKPLTPTQEDILGQAICAGWADRIARRLRSHMKIKALPEGQRPKAVRYQACSVEENVFLHPTSSVARLAPEFVVYNELIQTSRPYMRGVTSVKPTWLVLHARALCTFSRPLADPLPYYDSSLDEIFCWVAPTFGPHLWELPLDRSPMKSGNRRIAVFACALIQGKVLPCLKQVMNFLAADPLMLLKPEAAAQKRVSDLLHRLSAGPIVVDSRIKLKSVWDADPKFLYFEILSWFQSKFHRKFEVLWEQMKHEAQLDCKQLFPKKIKKYSSVKHRLKK*

Protein Length: 658

Fln nts: ACAGGAAGTTATTTCCTACAAGTCCACCTGTAGTAGAAGTGGCTACAAGGCAGTTTCCTGTAACCATTCATTTCTCTGCAAAGACAGAGCTGGTAGATTACTTGGGGAAGGCTTACCAAAAGGTTGTAGCTATTCACAAGAAGTTGCCACCTGGTGGTATACTGGTATTTGTCACAGGACAAAGGGAAGTGGAATTGCTATGCAGGCAGCTGAGGAAAGCCTTTGTGAAAAGAAGCAAAAGCAATGTTAAAATACAAGATATCTCTCAAAAATCAAAGCCCACTGTAGACATAAATGATGTTGCAAGTGAAACCAATCTTGAGGGCATTGCTCAAGCTGTGGATGGCACAGACAGTGGGCAACACAAAGATGGAACTGACAGGTTTAACTCATTTGACGATGAGGGGTTTGAAGTTCAATCAGAGGCAAACTCATCTTCCTCTGATGCTGAATTTGATTCAGATTCAGATAGTGAAGAAGAAGAGTGTCTTGACAGTGTTGCTGATAATACTTTGCAACAGAATAACTTACTTAAAGAACCAGGGTGCCTGGAATCGCTTAAGGCTACTTTTGAAGTTCTGACTAGTGGTAACGACAGTGGAAAACTTAACATAAATTCAAGCAAACAA_-_ATGGATGCAAACATTGATAAAGAAAAGAAGACGGATAAAAACAGTGATACAAGATTGAGAGAGCCAGGTTCTCTGTATTGTTTGCCTCTGTATGCAATGTTGCCTGCAGTAGCACAATTACGGGTATTTGCTGGGGTACCAGAAGGACAAAGGCTTGTTGTTGTGGCTACAAATGTTGCAGAAACTTCCTTAACAATCCCTGGTATTAAATATGTCGTTGACTGTGGTCGAGCAAAGGTTAAAGACTACAACTGTTCAAGTGGGATAGCAAAATATGAGATCCAATGGATTAGCAAGGCATCGGCTGCTCAGCGTGCTGGCAGAGCAGGAAGAACTGGACCAGGACATTGTTATCGTCTTTATTCTTCTGCAGTTTTCAACAATACATTTCCTGATTTTTCTGTACCTGAAATATGCAAGGTTCCTATCGAGGGTATTGTACTTCTTCTGAAATACATGGGTATCAATAAGGTAGTCAACTTCCCTTTCCCTACCCCTCCCGATATGACATCCTTAGAGGAAGCTGAACGATGCTTGAAGGCCCTTTCAGCACTGGATCAAGCTACAGGAATGCTTATGCCAGTTGGAGAAGCGATGGCATTATATCCTATCAGTCCTCGTCATTCGCGTATGCTTTTAACTGTCTTTGAAACAGTAAGTAAGTTGGAGGAATGGGCTGGAGCAAACTTGGTTTTAGCTTTTGCCATAGCTGTTGCAGCAGCATTGAGTATGGATAATCCATTCCTTACACAATTTAGCTCAAATGCAGTGCAAGACAGCCAGGAAAAAGAAATGGGAGTCAATGCTTTGAATGGAAAGGACACTGAAGAGCAAGAATATCTGCAAATAAAGAAGCAGCGTGAAATGGCTAATGCTGCACATAAGATGTTTGAAAATATGAGCAGTGATGCGTTAACAGTGGCAAATGCACTCCGTTCTTATGAGCTTGCAGGTAATCCAGGGGAGTTTTGTAGGACTAATTCCTTACATCTTAAAACAATGGATGAAATGTCAAAGCTTCGAAAGCAGCTGCTTCAACTTATTTTTAACCAGAAAATGGAGAAAAAACTAAAACAGGACTTCACTTGGGACTTTGGAAATTTAGCAGATGTAGAGCTTGCTTGGATGGAGTCTATGGACAAGCCTCTTACGCCAACTCAAGAAGACATACTGGGACAGGCAATCTGTGCAGGTTGGGCTGACAGAATTGCACGGCGTCTAAGATCCCATATGAAGATAAAAGCATTACCAGAAGGGCAAAGGCCTAAAGCAGTCAGATATCAAGCCTGCTCTGTTGAAGAAAATGTATTTCTGCACCCCACATCTTCTGTTGCTAGATTGGCACCTGAGTTTGTTGTTTATAATGAACTTATTCAGACGTCGAGACCATACATGCGTGGTGTGACAAGTGTGAAGCCAACATGGCTCGTTTTACATGCAAGGGCTCTGTGCACATTTTCTAGGCCTCTTGCAGATCCGCTACCATACTATGACTCTTCATTGGATGAGATATTTTGCTGGGTAGCTCCTACATTTGGTCCGCATTTATGGGAACTTCCTCTTGATAGATCTCCTATGAAGAGTGGGAATCGCCGGATAGCAGTGTTTGCTTGTGCACTTATTCAAGGAAAAGTTCTACCTTGCCTGAAACAGGTGATGAATTTTCTTGCGGCTGATCCTTTAATGTTGCTGAAACCTGAGGCTGCAGCACAGAAACGTGTCAGTGACCTTCTTCACAGATTGAGTGCAGGCCCAATTGTCGTTGATAGCCGTATTAAACTTAAGTCTGTTTGGGATGCTGATCCAAAGTTCTTGTATTTTGAAATATTATCGTGGTTCCAAAGTAAATTTCATCGGAAGTTTGAAGTACTTTGGGAGCAGATGAAGCACGAAGCCCAGTTGGATTGTAAACAACTATTTCCAAAGAAAATTAAGAAATACAGCAGTGTAAAGCATAGGCTGAAGAAATGACCTATGAAAATGGGTTAGCTTCAAGCCTCAGAATTGTTCAGCATTTATTTATCTGAGTGTAAGACCAATCTCATTTAGCTTAATCTATTTGATGACCTATTTAGAAATGTTGTTTGAAGGAAATAATGTGTAGTAGCTATGTCTGCAATGTGTTTTCAACAAAACTGAGACACATTCTTTGGCCTCAAGATTGCACTGAACAGGTTCAAGGAACTATCAAAACTGAGTTGCATTGTTTAGCCTCAAGTTTACACCGAACATCTTGACGGAACTATTTTGTACAAATTATTGCACCGAGAGATGCTTTCCAGCCCACTATGGAAGAGATGTTGTAATGTCATG

Fln Alignment:

Contig3054___VPEICKVPIEGIVLLLKYMGINKVVNFPFPTPPDMTSLEEAERCLKALSALDQATGMLMPVGEAMALYPISPRHSRMLLTVFETVSKLEEWAGXXXXXXXXXXXXXXXSMDNPFLTQFSSNAVQDSQEKEMGVNALNGKDTEEQEYLQIKKQREMANAAHKMFENMSSDALTVANALRSYELAGNPGEFCRTNSLHLKTMDEMSKLRKQLLQLIFNQKMEKKLKQDFTWDFGNLADVELAWMESMDKPLTPTQEDILGQAICAGWADRIARRLRSHMKIKALPEGQRPKAVRYQACSVEENVFLHPTSSVARLA--PEFVVYNELIQTSRPYMRGVTSVKPTWL
D5ADJ5______________VPEIQRTNLGNVVLLLKSLNIENLLDFDFMDPPPQDNILNSMYQLWVLGALDNV-GRLTALGRKMVEFPLDPPLAKMLL--------IGEQLGCV----------------NEVLTIVSMLSVPSV-------------------FFRPKDRAEESDAAREKFFVPESDHLTLLNVYQQWKSNQYRGDWCNDHFLQVKGLRKAREVRSQLLDILKMQKI-------------TLTTCGHDW-------------DVIRKAICSAYFHNAAR-------LKGIGE--------YANSRTGMPCHLHPSSALYGLGYTPDYVVYHELVLTTKEYMQCVTAVEPQWL

SNPs (tot: 4)

Position	A %	C %	G %	Probability
2612	20		80	0.995493
2613		20	80	0.995493
2614	20		80	0.995493
2640	75		25	0.996473

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain