SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3043

Length: 2687 nt

UniGene Fasta

>sp_v3.0_unigene3043
TCATTCTTCTCTATGTTCTTCTACAAGTATCTCGGGTTATAGTTGTAGCTGTACTATATCCAGGACTACGATATTTTGGCTATGGTTTGGACTTGAAAGAAGCAACAATTCTAATATGGTCAGGATTGCGTGGAGCTGTCGCATTGTCTTTATCCTTAATACTAAATCGTTCTAGTGACATTCCTCCACTCACAAAGGAAATTGGTGCTTTGTTTGTTTTCTTCACTGGCGGAGTAGTTTTCCTTACTCTCATTGTGAATGGATCAACAACACAATTTTTGTTACACTTACTAGGCATGGATAAAACGAGTGATATCAAGATGCGGATTGTAGACTACACAAGGTATGAGATGAACAATAAAGCCTTAGAGGCATTTCGAGAACTGGGGGAAGATGAAGAATTAGGGCAAGCTGATTGGACATCGGTGGTCAAGTATATAACATGTTTGACAACAGAGGAAGGGAATCGTATGCATCCTCATGCCATATCCATAAATGAAAATGACCAACAAAGGATGCATATGCAGGATACTCGATTGCGGCTTCTGAATGGTGTTCAAGCTGCTTATTGGGGAATGCTTGACGAAGGACGGATAACACAAACTGCTGCCATTCTTCTTATGCAATCAGTTGACGAAGCCATTGACATGGTAGCCTCCCATGAGACTTTACTTGACTGGAAAGGATTAGAAACTCATGTCCAATTTCCAAGCTATTTTAAATACCTTCAAATGAGGTTTCTACCTCAGAAGTTGGTGACAATTTTCACTGTTGAGAGATTGGAGCTTGCTTGCTACATTTGTGCAGCATTTCTTCGTGCCCATAGAATTGCTAGAAGACAATTACGTGAATTTATTGGTGAGAGTGAGGTTTCTGAGGCTATTATTGAAGAAAGTGAGAGAGAAGGGGAGCCAGCAAAGCAGTTTCTAGAAGATGTTCAGCTTACATTCCCTCAGGTTTTGCGTGTGGTCAAAACCAAGCAAGTAACATACTCCATTTTATTACAACTTAGTGAGTATGTTCAAAATCTTGAGAAGTCTGGCTTACTGGAGACAAAAGAAATGAATGAACTTCATGATGCCGTACAGATTGATCTGAAGAAGCTTCTGAGGAATCCTCCTTTGGTGAAGATGCTTTCTATAACTGAGATCTTAAGCAGTCACCCTTTCTTGGGAGCTTTACCTTCAAATATTCGTCAGTCTCTTGGAAACAGTGTGGAAGAGACAATGATAAAACGTAGAGTCCCACTGTATACAGAAGGCTCTAAACCTGATGGGATATGGCTTATTGCCAATGGAGTCGTCCAATGGAAAAGTAAGCATATTGCAAAAAGACATCCTCTGCACCCGACCTTTTCCCATGGAAGTACATTGGGACTTTATGAAGCCCTGACTGGAAGGTCTCGTCTTTGTGACTTGATTTCAGACTCCGTGGTTTGTTGCTTCTTTATTGAAACAGAAAAAGTTCTTTCAGCGCTTCGATCAACACCAGCTATAGAGGATTTCTTTTGGCAGGAAAGTGCAATGGTTGTTGCTAAACTTCTTCTGCCTCAGCAATTCGAGGAGATGACAATGCAAGAGATGCGAGCACTAATTTTGGAGAGGTCAATGATGCGTACTTACTTACGAGGCGAAATGATAGAAATTCTACCATATAATGTTGGAATTTTATTGGAGGGTTTTGTCAAACAAGAAAGCAGAGATGAGAGTATTGCATCTCCTTCTGCGCTAGTACCTTCATGTACAGAGCATCATCTCATTAGTGCAGGTAGCAGGCAAGGAAGTGCAGCCAACCAAGGGACATTCTTTGAAGCAGATACACGGTCCAGGATTATTATTTTTGAGCTTAGTTCAATTCATAGTGAGAGACATCTGCGCAGAGCTTCAGCTTCACTTTTATCTCATGGTTTACTAATTCCAGGCCGTCATAGTTATGAGCATGAAGGGCTTGTCTCTTGGCCTGATAAACAATATACAGTAGGAGAACCTGCAGATAATGAATTTATGAATCGTAAACAGGGACTCTCAAAAAGATTGTCTGCAAGAGCAATCCAGCTGAGCGTGTTTGGTAGTATGGTAAATGAGGTAACGTACAACCCGAGAAGAAGCTTTTGGAGAGAACCATGGGGAACACGATATCGAATTAGGTCATACCCATCAGCTCGATCACATATTAGGAAGTATCTTTCCCTGAGCGCACTTCCCTCTACTCAGTCAGAAAAGGGAGCGACAGTGAGAATGAAGTTGAAAAGCCAAGGTAGTATTGCTAGTGGTCGCTTTGGCACACGCCCTCGACCTCCCATAGCAAGAGTGAGGAGGCCAACAACAGCTGATGATTCAAGTGAAGGGTCCGATGCAGAAGATGAACACATTGTAAGAATAGACTCAGCAAGTAATCTCTTCCGTCATTAGTTCATCCATTCATTAAATTTATTATCATGTCCTCGCACTGTATCATTTCTTGTTTGTTTAGTCAAATCCTAACATCATTCAGAAATTCCAAGAGTACACTGTTTGAGAATTACAGAATAAATGGGAATGCTCTTGGACTATTACGTTGAGGCAATGTAGTGTATTTGGTAGATATGTATCTCTTTAAAGAAACCGAGAGAGATTCTTATAACTTGAATATCAATGTATAAATAAAATATCTTTTCTATTTAGTTGTTTTTTTGTCAAAAAAAAAAG

Ace file of the UniGene sp_v3.0_unigene3043

Annotations

Source	Descriptions	Term	Type	e value	Identity
AutoFact	Salt overly sensitive 1 n=2 Tax=Vitis vinifera RepID=D0V1M4_VITVI	-	-	0.0	54%
FL-Next	sp=Sodium/hydrogen exchanger 7; Arabidopsis thaliana (Mouse-ear cress).	-	-	0.0	55%
Sma3	Putative Na/H antiporter	-	-	3.062e-11	-

Source	Gene names
Sma3	At1g14660; At2g01980; F10B6.1; F14H20.5; GSVIVT00030673001; LOC_Os12g44360; NHA1; NHX7; NHX8; Os12g0641100; OsI_39290; OsJ_37032; PHYPADRAFT_175277; POPTRDRAFT_231570; PhaNHA1-e; PhaNHA1-n; PhaNHA1-u; RCOM_0776830; SOS1; SOS1B; SjSos1; T5E21.14; sos1; sos

Source	GOs	Term	Type	Identity
Sma3	plasma membrane	GO:0005886	Cellular Component	-
Sma3	chloroplast envelope	GO:0009941	Cellular Component	-
Sma3	integral to membrane	GO:0016021	Cellular Component	-
Sma3	catalytic activity	GO:0003824	Molecular Function	-
Sma3	lithium:hydrogen antiporter activity	GO:0010348	Molecular Function	-
Sma3	solute:hydrogen antiporter activity	GO:0015299	Molecular Function	-
Sma3	sodium ion binding	GO:0031402	Molecular Function	-
Sma3	cation transport	GO:0006812	Biological Process	-
Sma3	sodium ion transport	GO:0006814	Biological Process	-
Sma3	response to salt stress	GO:0009651	Biological Process	-
Sma3	lithium ion export	GO:0010352	Biological Process	-
Sma3	response to hydrogen peroxide	GO:0042542	Biological Process	-

Source	InterPros	Term	Type	Identity
Sma3	ATPase, F0 complex, subunit A	IPR000568	-	-
Sma3	Cyclic nucleotide-binding domain	IPR000595	-	-
Sma3	Metal-dependent phosphohydrolase, HD domain	IPR003607	-	-
Sma3	Cation/H+ exchanger	IPR006153	-	-
Sma3	RmlC-like jelly roll fold	IPR014710	-	-
Sma3	Na+/H+ exchanger, isoforms 7/8	IPR018418	-	-
Sma3	Cation/H+ exchanger, CPA1 family	IPR018422	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G01980.1	SOS1, ATSOS1, ATNHX7 sodium proton exchanger, putative (NHX7) (SOS1) chr2:457070-463145 FORWARD LENGTH=1146	55%
RefSeq	Arabidopsis thaliana	NP_178307.2	sodium/hydrogen exchanger 7 [Arabidopsis thaliana]	55%
RefSeq	Populus trichocarpa	XP_002315837.1	sodium proton exchanger, partial [Populus trichocarpa]	57%

Full-Lengther Next Prediction

Fln status: C-terminus

Fln database: sp_plants

Fln subject: Q9LKW9

Fln msg: your sequence is shorter than subject: 803 - 1146

Fln protein: ILLYVLLQVSRVIVVAVLYPGLRYFGYGLDLKEATILIWSGLRGAVALSLSLILNRSSDIPPLTKEIGALFVFFTGGVVFLTLIVNGSTTQFLLHLLGMDKTSDIKMRIVDYTRYEMNNKALEAFRELGEDEELGQADWTSVVKYITCLTTEEGNRMHPHAISINENDQQRMHMQDTRLRLLNGVQAAYWGMLDEGRITQTAAILLMQSVDEAIDMVASHETLLDWKGLETHVQFPSYFKYLQMRFLPQKLVTIFTVERLELACYICAAFLRAHRIARRQLREFIGESEVSEAIIEESEREGEPAKQFLEDVQLTFPQVLRVVKTKQVTYSILLQLSEYVQNLEKSGLLETKEMNELHDAVQIDLKKLLRNPPLVKMLSITEILSSHPFLGALPSNIRQSLGNSVEETMIKRRVPLYTEGSKPDGIWLIANGVVQWKSKHIAKRHPLHPTFSHGSTLGLYEALTGRSRLCDLISDSVVCCFFIETEKVLSALRSTPAIEDFFWQESAMVVAKLLLPQQFEEMTMQEMRALILERSMMRTYLRGEMIEILPYNVGILLEGFVKQESRDESIASPSALVPSCTEHHLISAGSRQGSAANQGTFFEADTRSRIIIFELSSIHSERHLRRASASLLSHGLLIPGRHSYEHEGLVSWPDKQYTVGEPADNEFMNRKQGLSKRLSARAIQLSVFGSMVNEVTYNPRRSFWREPWGTRYRIRSYPSARSHIRKYLSLSALPSTQSEKGATVRMKLKSQGSIASGRFGTRPRPPIARVRRPTTADDSSEGSDAEDEHIVRIDSASNLFRH*

Protein Length: 804

Fln nts: TCATTCTTCTCTATGTTCTTCTACAAGTATCTCGGGTTATAGTTGTAGCTGTACTATATCCAGGACTACGATATTTTGGCTATGGTTTGGACTTGAAAGAAGCAACAATTCTAATATGGTCAGGATTGCGTGGAGCTGTCGCATTGTCTTTATCCTTAATACTAAATCGTTCTAGTGACATTCCTCCACTCACAAAGGAAATTGGTGCTTTGTTTGTTTTCTTCACTGGCGGAGTAGTTTTCCTTACTCTCATTGTGAATGGATCAACAACACAATTTTTGTTACACTTACTAGGCATGGATAAAACGAGTGATATCAAGATGCGGATTGTAGACTACACAAGGTATGAGATGAACAATAAAGCCTTAGAGGCATTTCGAGAACTGGGGGAAGATGAAGAATTAGGGCAAGCTGATTGGACATCGGTGGTCAAGTATATAACATGTTTGACAACAGAGGAAGGGAATCGTATGCATCCTCATGCCATATCCATAAATGAAAATGACCAACAAAGGATGCATATGCAGGATACTCGATTGCGGCTTCTGAATGGTGTTCAAGCTGCTTATTGGGGAATGCTTGACGAAGGACGGATAACACAAACTGCTGCCATTCTTCTTATGCAATCAGTTGACGAAGCCATTGACATGGTAGCCTCCCATGAGACTTTACTTGACTGGAAAGGATTAGAAACTCATGTCCAATTTCCAAGCTATTTTAAATACCTTCAAATGAGGTTTCTACCTCAGAAGTTGGTGACAATTTTCACTGTTGAGAGATTGGAGCTTGCTTGCTACATTTGTGCAGCATTTCTTCGTGCCCATAGAATTGCTAGAAGACAATTACGTGAATTTATTGGTGAGAGTGAGGTTTCTGAGGCTATTATTGAAGAAAGTGAGAGAGAAGGGGAGCCAGCAAAGCAGTTTCTAGAAGATGTTCAGCTTACATTCCCTCAGGTTTTGCGTGTGGTCAAAACCAAGCAAGTAACATACTCCATTTTATTACAACTTAGTGAGTATGTTCAAAATCTTGAGAAGTCTGGCTTACTGGAGACAAAAGAAATGAATGAACTTCATGATGCCGTACAGATTGATCTGAAGAAGCTTCTGAGGAATCCTCCTTTGGTGAAGATGCTTTCTATAACTGAGATCTTAAGCAGTCACCCTTTCTTGGGAGCTTTACCTTCAAATATTCGTCAGTCTCTTGGAAACAGTGTGGAAGAGACAATGATAAAACGTAGAGTCCCACTGTATACAGAAGGCTCTAAACCTGATGGGATATGGCTTATTGCCAATGGAGTCGTCCAATGGAAAAGTAAGCATATTGCAAAAAGACATCCTCTGCACCCGACCTTTTCCCATGGAAGTACATTGGGACTTTATGAAGCCCTGACTGGAAGGTCTCGTCTTTGTGACTTGATTTCAGACTCCGTGGTTTGTTGCTTCTTTATTGAAACAGAAAAAGTTCTTTCAGCGCTTCGATCAACACCAGCTATAGAGGATTTCTTTTGGCAGGAAAGTGCAATGGTTGTTGCTAAACTTCTTCTGCCTCAGCAATTCGAGGAGATGACAATGCAAGAGATGCGAGCACTAATTTTGGAGAGGTCAATGATGCGTACTTACTTACGAGGCGAAATGATAGAAATTCTACCATATAATGTTGGAATTTTATTGGAGGGTTTTGTCAAACAAGAAAGCAGAGATGAGAGTATTGCATCTCCTTCTGCGCTAGTACCTTCATGTACAGAGCATCATCTCATTAGTGCAGGTAGCAGGCAAGGAAGTGCAGCCAACCAAGGGACATTCTTTGAAGCAGATACACGGTCCAGGATTATTATTTTTGAGCTTAGTTCAATTCATAGTGAGAGACATCTGCGCAGAGCTTCAGCTTCACTTTTATCTCATGGTTTACTAATTCCAGGCCGTCATAGTTATGAGCATGAAGGGCTTGTCTCTTGGCCTGATAAACAATATACAGTAGGAGAACCTGCAGATAATGAATTTATGAATCGTAAACAGGGACTCTCAAAAAGATTGTCTGCAAGAGCAATCCAGCTGAGCGTGTTTGGTAGTATGGTAAATGAGGTAACGTACAACCCGAGAAGAAGCTTTTGGAGAGAACCATGGGGAACACGATATCGAATTAGGTCATACCCATCAGCTCGATCACATATTAGGAAGTATCTTTCCCTGAGCGCACTTCCCTCTACTCAGTCAGAAAAGGGAGCGACAGTGAGAATGAAGTTGAAAAGCCAAGGTAGTATTGCTAGTGGTCGCTTTGGCACACGCCCTCGACCTCCCATAGCAAGAGTGAGGAGGCCAACAACAGCTGATGATTCAAGTGAAGGGTCCGATGCAGAAGATGAACACATTGTAAGAATAGACTCAGCAAGTAATCTCTTCCGTCATTAG___TTCATCCATTCATTAAATTTATTATCATGTCCTCGCACTGTATCATTTCTTGTTTGTTTAGTCAAATCCTAACATCATTCAGAAATTCCAAGAGTACACTGTTTGAGAATTACAGAATAAATGGGAATGCTCTTGGACTATTACGTTGAGGCAATGTAGTGTATTTGGTAGATATGTATCTCTTTAAAGAAACCGAGAGAGATTCTTATAACTTGAATATCAATGTATAAATAAAATATCTTTTCTATTTAGTTGTTTTTTTGTCAAAAAAAAAAG

Fln Alignment:

Contig3043___LLYVLLQVSRVIVVAVLYPGLRYFGYGLDLKEATILIWSGLRGAVALSLSLILNRSSDIPPLTKEIGAXXXXXXXXXXXXXXIVNGSTTQFLLHLLGMDKTSDIKMRIVDYTRYEMNNKALEAFRELGEDEELGQADWTSVVKYITCLTTEEGNRMH-PHAIS-INENDQQRMHMQDTRLRLLNGVQAAYWGMLDEGRITQTAAILLMQSVDEAIDMVASHETLLDWKGLETHVQFPSYFKYLQMRFLPQKLVTIFTVERLELACYICAAFLRAHRIARRQLREFXXXXXXXXXXXXXXXXXXXPAKQFLEDVQLTFPQVLRVVKTKQVTYSILLQLSEYVQNLEKSGLLETKEMNELHDAVQIDLKKLLRNPPLVKMLSITEILSSHPFLGALPSNIRQSLGNSVEETMIKRRVPLYTEGSKPDGIWLIANGVVQWKSKHIAKRHPLHPTFSHGSTLGLYEALTGRSRLCDLISDSVVCCFFIETEKVLSALRSTPAIEDFFWQESAMVVAKLLLPQQFEEMTMQEMRALI-LERSMMRTYLRGEMIEILPYNVGILLEGFVKQES-RDESIASPSALVPSCTEHHLISAGSRQG----SAANQGTFFEADTRSRIIIFELSSIHSERHLRRASASLL----SHGLLIPGRHSYEHEGLVSWPDKQYTVGEPADNEFMNRKQGLSKRLSARAIQLSVFGSMVN
Q9LKW9______________LLYVYIQLSRVVVVGVLYPLLCRFGYGLDWKESIILVWSGLRGAVALALSLSVKQSSGNSHISKETGTLFLFFTGGIVFLTLIVNGSTTQFVLRLLRMDILPAPKKRILEYTKYEMLNKALRAFQDLGDDEELGPADWPTVESYISSLKGSEGELVHHPHNGSKIGSLDPKSL--KDIRMRFLNGVQATYWEMLDEGRISEVTANILMQSVDEALDQVST--TLCDWRGLKPHVNFPNYYNFLHSKVVPRKLVTYFAVERLESACYISAAFLRAHTIARQQLYDFLGESNIGSIVINESEKEGEEAKKFLEKVRSSFPQVLRVVKTKQVTYSVLNHLLGYIENLEKVGLLEEKEIAHLHDAVQTGLKKLLRNPPIVKLPKLSDMITSHPLSVALPPAFCEPLKHSKKEPMKLRGVTLYKEGSKPTGVWLIFDGIVKWKSKILSNNHSLHPTFSHGSTLGLYEVLTGKPYLCDLITDSMVLCFFIDSEKILS-LQSDSTIDDFLWQESALVLLKLLRPQIFESVAMQELRALVSTESSKLTTYVTGESIEIDCNSIGLLLEGFVKPVGIKEELISSPAALSPSNGNQSFHNSSEASGIMRVSFSQQATQYIVETRARAIIFNIGAFGADRTLHRRPSSLTPPRSSSSDQLQRSFRKEHRGLMSWPENIYAKQQQEIN-----KTTLS--LSERAMQLSIFGSMVN

SNPs (tot: 28)

Position	A %	C %	G %	T %	Probability
1865	25		75		0.996473
1907			33	66	0.997452
2024		33	66		1.0
2123	66		33		0.997452
2151		11		88	0.923564
2156	90		10		0.90298
2159	90		10		0.90298
2160			90	10	0.90298
2161		90	10		0.90298
2162	10			90	0.90298
2164		10	90		0.90298
2165	90			10	0.90298
2167		90	10		0.90298
2168	90		10		0.90298
2172	90		10		0.90298
2174		10		90	0.90298
2176		8	75	16	0.99999
2177		16	83		0.999991
2182	84		15		0.999986
2199		78		14	0.999974
2200			14	85	0.999981
2208	71		7	21	1.0
2260	16		83		0.999991
2284		83		16	0.999991
2449		77	22		0.999999
2514	16			83	0.994512
2587	40		60		1.0
2651	50	50			1.0

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain