SustainPineDB

Assembly Name: SustainPine v3.0

UniGene Name: sp_v3.0_unigene3016

Length: 2970 nt

UniGene Fasta

>sp_v3.0_unigene3016
ATATATGCAAGCATATATATTACCTTCCTATACAGCCTGTTTCCCAGGCTTAAGGACCATACCCATATAGGTGTAGACCAATTGATTTAGTTGTAGACCAATTGATTTAGTTATAGCACCAGTAGCAGGAGAGAGCATCTCGCCCAGCATCTTTTCTAGTTTGATAGCCTGCAGCGTCCCCTTCGGTCGGTTCCTTATCCATGACCCATTGATCCATAAATAGAATTCCATTGTTACCCTTTTTATTGAATATGCATCCAATCGCATAAATAGAATTCCATTGTTACCCTTTTTATTGAATATGCATCCATTGTTACCCTTTTTATTGAATATGCATCCAATCGCATAGCTTTCGATAACATCCGTCCCTATGTCATACATGGTAATTCCTGTGGTTGTCAACTAAAATTCTTTCATATTGCAATCCTATAATTGATTTACTCCCAATTTTAGTTACTGCCTTTTAACCAACGAACCCGTGAGCTGCGTTTCCAGAAACAGAGACCGACTGACGAAATACAAAAGGATAGGGCCATCCATTTGATTTGAATGAACAGTGGCCATTAGCATTTGCATTCAACTTGGTTAAGATGGAATGCTTAATGCGGATTCCCTTTGGGCAAACATGTCATGGCAGAGCAAGGAGCAGCGATATCAAATCTCTTCTTCCCTTCGCTTCTTCTTCTTCCACCCTCAGGAGTAGGCAATTGAAGGTCGTTCAGAGTCAACAGGGCTCATGTTTTCCCAAGGGCCATGTGACCGCCCGGTCTGCGACCGAAGCCACCGATACCCTCACAACAACGGCGGCTGATCCTCTTCCTTCTCTTCCTTCTTCATCATCAGATTATGTGAAATTTGTGGAGATGTCCAAGAATGGTAACTTGATACCACTCTACCGCTGTATATTTTCGGATCACCTAACACCAGTGCTTGCTTATCGGTGCTTGGTAAGCCAAGATGATAGAGACGCCCCGAGTTTCTTATTCGAATCTGTGGAGCAAGGCCAGATGGGCACCAATGTGGGCCGTTTTAGTATTGTTGGAGCACAGCCTGCAATGGAAATTGTTGCTAAGGAAAATTCAGTTACGATAATGGACCATGAACGGGGAACTAGGGAGGAGGAATTCACTGAGGATCCAATGACTGTGCCTCCACGCATAATGTCAAATTGGAAACCAGTGCTGACTGATGAGCTTCCCATTGCTTTCTGTGGTGGATGGATTGGATATTTTTCATATGATACTGTGAGGTATGTAGAGAAGAGAAAGTTGCCTTTTTCAAAAGCTCCTGAAGATGATAGAGGTCTGCCTGATATGCACTTGGGGCTTTACAATGATGTTGTGGTGTTTGACAACGTTGAAAAGAAAGCATATGTCATTCATTGGGTGCGAGTAGACGATTATTCTTCTGCTGATGAGGCATTCAAAGATGGACAACGACGACTTGATATCCTAGTTTCCCGAGTGCAGGATATTGATCCTCCAAGACTTTCTTCAGGTTCTATTAAACTGCAAACTGGACTATTTGGGGCTGCCCTGAAAGAGTCTAGTATGACAAGTGAGCAATACAAGAAAGCTGTTTTGAAGGCACAGGAGCACATTCTAGCTGGGGACATCTTCCAAATTGTTCTTAGCCAGCGTTTTGAGCGTCGCACATTTGCAGATCCATTTGAAGTATACAGGGCATTACGAGTTGTGAATCCAAGCCCTTATATGATATATTTGCAGGCTCGGGGCTGTATACTGGTTGCTTCTAGTCCAGAAATTCTCACACGTGTAAAACAGGGTAAAGTAACCAATCGTCCCCTTGCTGGCACAAGGAAGAGGGGTAAGACACAAGCGGAGGATGAGATATTGGAAAAGGAACTGTTAAATGATGAAAAGGAATGTGCTGAGCACATCATGCTTGTTGATCTTGGTCGGAATGATGTTGGAAAGGTTTCAAAGCCTGGATCTGTGAAGGTGGAGAAATATATGAATGTCGAGCGTTATTCACATGTTATGCACATTAGTTCAACGGTAACAGGACAATTACAAGAGAACTTGACTTCTTGGGATGCCCTTCGTGCTGCTTTGCCAGTTGGAACAGTTAGTGGAGCCCCAAAGGTCAAAGCTATGGAGTTGATCGATGAAATTGAACCAACTCGTAGAGGGCCATATAGTGGTGGAATTGGAGGTATCTCCTATAATGGAGACATGGATATTGCACTAGCCCTACGCACAATGGTATTTTCTACTGCACCACGATATGATACGATGTATTCCTACAAGGATGTTGGAAAACGCAGGGATTGGGTCGTACATCTTCAAGCAGGTGCAGGAATTGTTGCAGATAGTAATCCTGATGATGAACATAGGGAATGCATCAACAAGGCCGCTGGGCTTGGGAGAGCAATTGATCTTGCAGAAGCCACATTTGTTGATACATGACTTTATTAGTGGTTCTAATTTAGATATGCCCTAAAGTAGTACCAGTCATTTCACCATTTTGGGAAGCAAGAGATTGTAAAATGGAAATTATATCTACCTGATAATTAGTAACAGTGGATGGAAATTATATCTACTCGATAATTAGCAATAGTGGATCCAGAGGCCATTTGAATTTCAACAAACCATATGATCAACAATGACCATATTGCAATCATTGGTCTCATGGAAAGTAGCTATTTTCATTTGGAGTATATAACGGCTATAACTTTTCTTAGTTAGCATATTCATGACATAACTAGATTCTATACCATGTTGGCAGAGGGTGGTTTGATTGAGGAGTTGTATGGTCTTGGCATCAACCTCAATTTTTTTTAAATGGAATGCAAGTCAAGGCAGTTCAATGAGCTGTCATTCTTACTTCTTTGAGTTGGTGGTTGTTATGCCTCCTACGTGAGAAAATTTTATGCCAAGAATATGAGATAATATGTATAAGATGTGTATAATAAGTTTCCACTTTTTATTCCCATTTTTTGAATGCTAA

Ace file of the UniGene sp_v3.0_unigene3016

Annotations

Source	Descriptions	Term	Type	Identity
AutoFact	Anthranilate synthase alpha subunit n=1 Tax=Ruta graveolens RepID=Q41155_RUTGR	-	-	73%
FL-Next	sp=Anthranilate synthase component I-1, chloroplastic; Arabidopsis thaliana (Mouse-ear cress).	-	-	73%
Sma3	Anthranilate synthase alpha subunit	-	-	-

Source	GOs	Term	Type	e value	Identity
Sma3	anthranilate synthase activity	GO:0004049	Molecular Function	0.0	-
Sma3	tryptophan biosynthetic process	GO:0000162	Biological Process	0.0	-

Source	InterPros	Term	Type	Identity
Sma3	Anthranilate synthase component I, N-terminal	IPR006805	-	-
Sma3	Anthranilate synthase component I, PabB-like	IPR005256	-	-
Sma3	Chorismate binding, C-terminal	IPR015890	-	-
Sma3	ADC synthase	IPR005801	-	-

Source	Species	ID	Description	Identity
ATG	Arabidoptis thaliana	AT2G29690.1	ASA2, ATHANSYNAB anthranilate synthase 2 chr2:12693899-12696791 FORWARD LENGTH=621	73%
RefSeq	Arabidopsis thaliana	NP_196192.1	anthranilate synthase component I-1 [Arabidopsis thaliana]	73%
RefSeq	Populus trichocarpa	XP_002314114.1	anthranilate synthase, alpha subunit 2, partial [Populus trichocarpa]	78%

Full-Lengther Next Prediction

Fln status: Complete

Fln database: sp_plants

Fln subject: P32068

Fln msg:

Fln protein: MECLMRIPFGQTCHGRARSSDIKSLLPFASSSSTLRSRQLKVVQSQQGSCFPKGHVTARSATEATDTLTTTAADPLPSLPSSSSDYVKFVEMSKNGNLIPLYRCIFSDHLTPVLAYRCLVSQDDRDAPSFLFESVEQGQMGTNVGRFSIVGAQPAMEIVAKENSVTIMDHERGTREEEFTEDPMTVPPRIMSNWKPVLTDELPIAFCGGWIGYFSYDTVRYVEKRKLPFSKAPEDDRGLPDMHLGLYNDVVVFDNVEKKAYVIHWVRVDDYSSADEAFKDGQRRLDILVSRVQDIDPPRLSSGSIKLQTGLFGAALKESSMTSEQYKKAVLKAQEHILAGDIFQIVLSQRFERRTFADPFEVYRALRVVNPSPYMIYLQARGCILVASSPEILTRVKQGKVTNRPLAGTRKRGKTQAEDEILEKELLNDEKECAEHIMLVDLGRNDVGKVSKPGSVKVEKYMNVERYSHVMHISSTVTGQLQENLTSWDALRAALPVGTVSGAPKVKAMELIDEIEPTRRGPYSGGIGGISYNGDMDIALALRTMVFSTAPRYDTMYSYKDVGKRRDWVVHLQAGAGIVADSNPDDEHRECINKAAGLGRAIDLAEATFVDT*

Protein Length: 614

Fln nts: ATATATGCAAGCATATATATTACCTTCCTATACAGCCTGTTTCCCAGGCTTAAGGACCATACCCATATAGGTGTAGACCAATTGATTTAGTTGTAGACCAATTGATTTAGTTATAGCACCAGTAGCAGGAGAGAGCATCTCGCCCAGCATCTTTTCTAGTTTGATAGCCTGCAGCGTCCCCTTCGGTCGGTTCCTTATCCATGACCCATTGATCCATAAATAGAATTCCATTGTTACCCTTTTTATTGAATATGCATCCAATCGCATAAATAGAATTCCATTGTTACCCTTTTTATTGAATATGCATCCATTGTTACCCTTTTTATTGAATATGCATCCAATCGCATAGCTTTCGATAACATCCGTCCCTATGTCATACATGGTAATTCCTGTGGTTGTCAACTAAAATTCTTTCATATTGCAATCCTATAATTGATTTACTCCCAATTTTAGTTACTGCCTTTTAACCAACGAACCCGTGAGCTGCGTTTCCAGAAACAGAGACCGACTGACGAAATACAAAAGGATAGGGCCATCCATTTGATTTGAATGAACAGTGGCCATTAGCATTTGCATTCAACTTGGTTAAG_-_ATGGAATGCTTAATGCGGATTCCCTTTGGGCAAACATGTCATGGCAGAGCAAGGAGCAGCGATATCAAATCTCTTCTTCCCTTCGCTTCTTCTTCTTCCACCCTCAGGAGTAGGCAATTGAAGGTCGTTCAGAGTCAACAGGGCTCATGTTTTCCCAAGGGCCATGTGACCGCCCGGTCTGCGACCGAAGCCACCGATACCCTCACAACAACGGCGGCTGATCCTCTTCCTTCTCTTCCTTCTTCATCATCAGATTATGTGAAATTTGTGGAGATGTCCAAGAATGGTAACTTGATACCACTCTACCGCTGTATATTTTCGGATCACCTAACACCAGTGCTTGCTTATCGGTGCTTGGTAAGCCAAGATGATAGAGACGCCCCGAGTTTCTTATTCGAATCTGTGGAGCAAGGCCAGATGGGCACCAATGTGGGCCGTTTTAGTATTGTTGGAGCACAGCCTGCAATGGAAATTGTTGCTAAGGAAAATTCAGTTACGATAATGGACCATGAACGGGGAACTAGGGAGGAGGAATTCACTGAGGATCCAATGACTGTGCCTCCACGCATAATGTCAAATTGGAAACCAGTGCTGACTGATGAGCTTCCCATTGCTTTCTGTGGTGGATGGATTGGATATTTTTCATATGATACTGTGAGGTATGTAGAGAAGAGAAAGTTGCCTTTTTCAAAAGCTCCTGAAGATGATAGAGGTCTGCCTGATATGCACTTGGGGCTTTACAATGATGTTGTGGTGTTTGACAACGTTGAAAAGAAAGCATATGTCATTCATTGGGTGCGAGTAGACGATTATTCTTCTGCTGATGAGGCATTCAAAGATGGACAACGACGACTTGATATCCTAGTTTCCCGAGTGCAGGATATTGATCCTCCAAGACTTTCTTCAGGTTCTATTAAACTGCAAACTGGACTATTTGGGGCTGCCCTGAAAGAGTCTAGTATGACAAGTGAGCAATACAAGAAAGCTGTTTTGAAGGCACAGGAGCACATTCTAGCTGGGGACATCTTCCAAATTGTTCTTAGCCAGCGTTTTGAGCGTCGCACATTTGCAGATCCATTTGAAGTATACAGGGCATTACGAGTTGTGAATCCAAGCCCTTATATGATATATTTGCAGGCTCGGGGCTGTATACTGGTTGCTTCTAGTCCAGAAATTCTCACACGTGTAAAACAGGGTAAAGTAACCAATCGTCCCCTTGCTGGCACAAGGAAGAGGGGTAAGACACAAGCGGAGGATGAGATATTGGAAAAGGAACTGTTAAATGATGAAAAGGAATGTGCTGAGCACATCATGCTTGTTGATCTTGGTCGGAATGATGTTGGAAAGGTTTCAAAGCCTGGATCTGTGAAGGTGGAGAAATATATGAATGTCGAGCGTTATTCACATGTTATGCACATTAGTTCAACGGTAACAGGACAATTACAAGAGAACTTGACTTCTTGGGATGCCCTTCGTGCTGCTTTGCCAGTTGGAACAGTTAGTGGAGCCCCAAAGGTCAAAGCTATGGAGTTGATCGATGAAATTGAACCAACTCGTAGAGGGCCATATAGTGGTGGAATTGGAGGTATCTCCTATAATGGAGACATGGATATTGCACTAGCCCTACGCACAATGGTATTTTCTACTGCACCACGATATGATACGATGTATTCCTACAAGGATGTTGGAAAACGCAGGGATTGGGTCGTACATCTTCAAGCAGGTGCAGGAATTGTTGCAGATAGTAATCCTGATGATGAACATAGGGAATGCATCAACAAGGCCGCTGGGCTTGGGAGAGCAATTGATCTTGCAGAAGCCACATTTGTTGATACATGA___CTTTATTAGTGGTTCTAATTTAGATATGCCCTAAAGTAGTACCAGTCATTTCACCATTTTGGGAAGCAAGAGATTGTAAAATGGAAATTATATCTACCTGATAATTAGTAACAGTGGATGGAAATTATATCTACTCGATAATTAGCAATAGTGGATCCAGAGGCCATTTGAATTTCAACAAACCATATGATCAACAATGACCATATTGCAATCATTGGTCTCATGGAAAGTAGCTATTTTCATTTGGAGTATATAACGGCTATAACTTTTCTTAGTTAGCATATTCATGACATAACTAGATTCTATACCATGTTGGCAGAGGGTGGTTTGATTGAGGAGTTGTATGGTCTTGGCATCAACCTCAATTTTTTTTAAATGGAATGCAAGTCAAGGCAGTTCAATGAGCTGTCATTCTTACTTCTTTGAGTTGGTGGTTGTTATGCCTCCTACGTGAGAAAATTTTATGCCAAGAATATGAGATAATATGTATAAGATGTGTATAATAAGTTTCCACTTTTTATTCCCATTTTTTGAATGCTAA

Fln Alignment:

Contig3016___DYVKFVEMSKNGNLIPLYRCIFSDHLTPVLAYRCLVSQDDRDAPSFLFESVEQGQMGTNVGRFSIVGAQPAMEIVAKENSVTIMDHERGTREEEFTEDPMTVPPRIMSNWKP--VLTDELPIAFCGGWIGYFSYDTVRYVEKRKLPFSKAPEDDRGLPDMHLGLYNDVVVFDNVEKKAYVIHWVRVDDYSSADEAFKDGQRRLDILVSRVQDIDPPRLSSGSIKLQTGLFGAALKESSMTSEQYKKAVLKAQEHILAGDIFQIVLSQRFERRTFADPFEVYRALRVVNPSPYMIYLQARGCILVASSPEILTRVKQGKVTNRPLAGTRKRGKTQAEDEILEKELLNDEKECAEHIMLVDLGRNDXXXXXXXXXXXXXXYMNVERYSHVMHISSTVTGQLQENLTSWDALRAALPVGTVSGAPKVKAMELIDEIEPTRRXXXXXXXXXXXXXXDMDIALALRTMVFSTAPRYDTMYSYKDVGKRRDWVVHLQAGAGIVADSNPDDEHRECINKAAGLGRAIDLAEATFV
P32068______________DTKKLADASKSTNLIPIYRCIFSDQLTPVLAYRCLVKEDDREAPSFLFESVEPGSQMSSVGRYSVVGAQPAMEIVAKENKVIVMDHNNETMTEEFVEDPMEIPRKISEKWNPDPQLVQDLPDAFCGGWVGFFSYDTVRYVEKRKLPFSKAPEDDRNLPDMHLGLYDDVVVFDHVEKKAYVIHWIRLDGSLPYEKAYSNGMQHLENLVAKLHDIEPPKLAAGNVNLQTRQFGPSLDNSNVTCEEYKEAVVKAKEHILAGDIFQIVLSQRFERRTFADPFEVYRALRVVNPSPYMGYLQARGCILVASSPEILTKVKQNKIVNRPLAGTSKRGKNEVEDKRLEKELLENEKQCAEHIMLVDLGRNDVGKVTKYGSVKVEKLMNIERYSHVMHISSTVTGELQDGLTCWDVLRAALPVGTVSGAPKVKAMELIDELEPTRRGPYSGGFGGVSFTGDMDIALSLRTIVFPTACQYNTMYSYKDANKRREWVAYLQAGAGVVADSDPQDEHCECQNKAAGLARAIDLAESAFV

SNPs (tot: 22)

Position	A %	C %	G %	T %	Probability
2530	21		78		1.0
2697	11			88	0.923564
2698	11			88	0.923564
2699			11	88	0.923564
2701	11	88			0.923564
2705		11	88		0.923564
2762		11		88	0.923564
2763		11		88	0.923564
2764	11		88		0.923564
2772		11	88		0.923564
2800			16	83	0.994512
2803	16			83	0.994512
2817			83	16	0.994512
2829		20		80	0.995493
2832	20		80		0.995493
2833		20		80	0.995493
2837		33		66	0.997452
2844	33			66	0.997452
2846	33	66			0.997452
2847	33			66	0.997452
2848	33			66	0.997452
2850		66	33		0.997452

SSRs (tot: 1)

Start position	End position	Sequence	Length
676	688	CTT CTT CTT CTT C	13

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Biología Molecular y Biotecnología de Plantas, Facultad de Ciencias y Plataforma Andaluza de Bioinformática, Universidad de Málaga, E-29071 Málaga, Spain